Rv0668 - c.1284G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
44 Sensitive
16 RR-TB
3 HR-TB
19 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3.1 | 3 |
| lineage4.9 | 48 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage2.2.1 | 8 |
| lineage4 | 4 |
| lineage4.1.2.1 | 6 |
| lineage4.4.1.1.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage3.1.2.1 | 2 |
| lineage3 | 2 |
| lineage2.2.1;lineage4 | 1 |
| La1.8.1 | 4 |
| lineage4.1.3 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.6.2.2 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage2.2.2 | 3 |
| La2 | 1 |
| lineage4.1.1.1 | 3 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage4.4.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.8.1 | 1 |
| lineage2.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage2.2.1;lineage4.9 | 3 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage3;lineage4 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage1 | 1 |
| lineage4.4.1.1 | 2 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.3 | 1 |
| lineage4.3.4.2 | 2 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage3.1.1 | 3 |
| lineage4.3.4.2.1 | 1 |
| lineage3;lineage4.9 | 1 |
| 1 | |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.2 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 2 |
| La1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 142 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7070157 | Other | lineage4.1.1.3.1 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR323035 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR6045832 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR4820324 | Other | lineage4 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR6045957 | Other | lineage4.9 | None | ERR4820266 | Sensitive | lineage3 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR3675446 | RR-TB | lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR5087846 | Other | La1.8.1 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR4821981 | Other | lineage4.1.2.1 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR4188213 | Other | La1.8.1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | ERR4815301 | Other | lineage4.4.2 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR2509886 | Other | lineage3 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | ERR4814312 | Other | lineage4 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4818126 | Other | lineage1 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4829333 | Other | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR7236330 | Other | La1.8.1 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4817069 | RR-TB | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR3675552 | Other | lineage4.9 | None | ERR4821408 | Sensitive | lineage4.1.2 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR4815502 | Other | lineage4.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4821245 | Other | lineage4.1.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR21279370 | HR-TB | lineage2.2.2 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR16278274 | Other | La1.4 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR4188222 | Other | La1.8.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR4814748 | Other | lineage4.8 | None | SRR1175512 | Sensitive | lineage4.9 | None |
|---|
