TB-Profiler result

Run: ERR4188213
Summary

Run ID: ERR4188213

Sample name:

Date: 01-04-2023 04:57:49

Number of reads: 880605

Percentage reads mapped: 21.57

Strain: La1.8.1

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 1.0
La1.8 M.bovis None None 1.0
La1.8.1 M.bovis None None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
katG 2154154 p.Leu653Pro missense_variant 0.14 isoniazid
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 0.95
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 8741 c.1440C>T synonymous_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9217 p.Asp639Ala missense_variant 0.96
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763477 c.108C>T synonymous_variant 0.27
rpoC 763478 c.109_111delCGCinsAGG synonymous_variant 0.26
rpoC 763484 c.115_117delCTTinsTTG synonymous_variant 0.28
rpoC 763498 c.129G>A synonymous_variant 0.3
rpoC 763501 p.Asp44Glu missense_variant 0.32
rpoC 763505 c.136C>T synonymous_variant 0.31
rpoC 763519 c.150G>A synonymous_variant 0.33
rpoC 763522 c.153C>A synonymous_variant 0.33
rpoC 763528 c.159G>T synonymous_variant 0.32
rpoC 763534 c.165T>C synonymous_variant 0.33
rpoC 763535 p.Arg56Lys missense_variant 0.31
rpoC 763550 p.Tyr61His missense_variant 0.39
rpoC 763570 c.201G>C synonymous_variant 0.44
rpoC 763573 c.204G>T synonymous_variant 0.44
rpoC 763578 p.Phe70Tyr missense_variant 0.44
rpoC 763582 c.213G>A synonymous_variant 0.47
rpoC 763586 p.Ile73Val missense_variant 0.47
rpoC 763589 p.Ile74Val missense_variant 0.47
rpoC 763597 p.Glu76Asp missense_variant 0.42
rpoC 763615 c.246G>T synonymous_variant 0.3
rpoC 763633 c.264T>C synonymous_variant 0.22
rpoC 763636 c.267T>C synonymous_variant 0.24
rpoC 763642 c.273G>C synonymous_variant 0.23
rpoC 763648 c.279C>G synonymous_variant 0.23
rpoC 763651 c.282C>T synonymous_variant 0.23
rpoC 763660 c.291T>G synonymous_variant 0.23
rpoC 763663 c.294C>T synonymous_variant 0.23
rpoC 763669 c.300C>G synonymous_variant 0.23
rpoC 763672 c.303C>A synonymous_variant 0.23
rpoC 763673 p.Thr102Ser missense_variant 0.23
rpoC 764353 c.984G>T synonymous_variant 0.16
rpoC 764359 c.990C>T synonymous_variant 0.42
rpoC 764371 c.1002G>C synonymous_variant 0.52
rpoC 764377 c.1008C>G synonymous_variant 0.54
rpoC 764380 c.1011G>C synonymous_variant 0.54
rpoC 764387 c.1018T>C synonymous_variant 0.65
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.61
rpoC 764410 c.1041G>C synonymous_variant 0.67
rpoC 764419 c.1050C>G synonymous_variant 0.71
rpoC 764428 c.1059G>C synonymous_variant 0.74
rpoC 764434 c.1065A>G synonymous_variant 0.74
rpoC 764435 c.1066A>C synonymous_variant 0.74
rpoC 764441 p.Ile358Leu missense_variant 0.73
rpoC 764449 c.1080G>C synonymous_variant 0.73
rpoC 764452 c.1083T>C synonymous_variant 0.74
rpoC 764461 p.Glu364Asp missense_variant 0.77
rpoC 764470 c.1101C>T synonymous_variant 0.77
rpoC 764471 p.Asn368Gln missense_variant 0.76
rpoC 764498 p.Ser377Ala missense_variant 0.82
rpoC 764503 c.1134G>C synonymous_variant 0.82
rpoC 764513 p.Phe382Ile missense_variant 0.8
rpoC 764521 c.1152T>C synonymous_variant 0.81
rpoC 764536 c.1167G>T synonymous_variant 0.81
rpoC 764539 c.1170C>G synonymous_variant 0.8
rpoC 764548 c.1179G>A synonymous_variant 0.83
rpoC 764560 c.1191T>C synonymous_variant 0.83
rpoC 764575 c.1206T>C synonymous_variant 0.84
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.84
rpoC 764579 p.Asp404His missense_variant 0.82
rpoC 764582 p.Leu405Met missense_variant 0.83
rpoC 764605 c.1236G>T synonymous_variant 0.77
rpoC 764614 c.1245G>A synonymous_variant 0.77
rpoC 764623 c.1254C>T synonymous_variant 0.75
rpoC 764632 c.1263T>C synonymous_variant 0.75
rpoC 764644 c.1275G>C synonymous_variant 0.67
rpoC 764650 c.1281G>T synonymous_variant 0.57
rpoC 764653 c.1284G>C synonymous_variant 0.56
rpoC 764656 c.1287C>T synonymous_variant 0.55
rpoC 764662 c.1293G>C synonymous_variant 0.51
rpoC 764672 p.Gln435Ser missense_variant 0.36
rpoC 764677 c.1308C>G synonymous_variant 0.36
rpoC 764681 p.Leu438Met missense_variant 0.34
rpoC 764684 p.His439Tyr missense_variant 0.33
rpoC 764695 c.1326T>C synonymous_variant 0.33
rpoC 764701 c.1332C>G synonymous_variant 0.3
rpoC 764705 p.Leu446Glu missense_variant 0.28
rpoC 764713 c.1344G>C synonymous_variant 0.28
rpoC 764731 c.1362G>T synonymous_variant 0.23
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472100 n.255T>C non_coding_transcript_exon_variant 0.38
rrs 1472101 n.256G>A non_coding_transcript_exon_variant 0.43
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.56
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.65
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.65
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.62
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.63
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.63
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.62
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.61
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.58
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.58
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.58
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.61
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.59
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.59
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.59
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.3
rrs 1472379 n.534T>G non_coding_transcript_exon_variant 0.29
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.25
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.42
rrs 1472518 n.673G>C non_coding_transcript_exon_variant 0.53
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.84
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.86
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.88
rrs 1472544 n.699C>G non_coding_transcript_exon_variant 0.88
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.88
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.9
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.9
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.9
rrs 1472579 n.734G>A non_coding_transcript_exon_variant 0.93
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.93
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.93
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.94
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.95
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.95
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.95
rrs 1472669 n.824_825insCGG non_coding_transcript_exon_variant 0.93
rrs 1472676 n.832_840delCTTCCTTGG non_coding_transcript_exon_variant 0.94
rrs 1472697 n.852T>A non_coding_transcript_exon_variant 0.86
rrs 1472700 n.855C>T non_coding_transcript_exon_variant 0.86
rrs 1472708 n.863T>A non_coding_transcript_exon_variant 0.83
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.83
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.83
rrs 1472733 n.888G>C non_coding_transcript_exon_variant 0.82
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.82
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.82
rrs 1472742 n.897C>G non_coding_transcript_exon_variant 0.82
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.82
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.74
rrs 1472779 n.934G>A non_coding_transcript_exon_variant 0.29
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.23
rrs 1472786 n.941C>T non_coding_transcript_exon_variant 0.15
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.17
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.17
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.17
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.36
rrs 1472953 n.1107_1108insAG non_coding_transcript_exon_variant 0.64
rrs 1472970 n.1125C>T non_coding_transcript_exon_variant 0.85
rrs 1472971 n.1127delT non_coding_transcript_exon_variant 0.85
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.85
rrs 1472975 n.1130T>A non_coding_transcript_exon_variant 0.86
rrs 1472977 n.1132G>A non_coding_transcript_exon_variant 0.85
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.86
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.88
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.87
rrs 1472992 n.1147A>C non_coding_transcript_exon_variant 0.89
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.9
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.9
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.9
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.9
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.88
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.78
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.71
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.6
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.17
rrs 1473070 n.1225G>A non_coding_transcript_exon_variant 0.17
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.43
rrs 1473093 n.1248C>A non_coding_transcript_exon_variant 0.4
rrs 1473094 n.1249T>A non_coding_transcript_exon_variant 0.43
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.5
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.62
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.62
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.62
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.57
rrs 1473127 n.1282G>A non_coding_transcript_exon_variant 0.62
rrs 1473128 n.1283C>G non_coding_transcript_exon_variant 0.62
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.56
rrs 1473147 n.1302G>C non_coding_transcript_exon_variant 0.56
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.56
rrs 1473150 n.1305T>G non_coding_transcript_exon_variant 0.56
rrs 1473161 n.1316A>C non_coding_transcript_exon_variant 0.57
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.57
rrs 1473164 n.1319C>G non_coding_transcript_exon_variant 0.54
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.53
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.5
rrs 1473179 n.1334C>T non_coding_transcript_exon_variant 0.5
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.5
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.53
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.46
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.29
rrl 1474228 n.571T>A non_coding_transcript_exon_variant 0.38
rrl 1474232 n.575C>G non_coding_transcript_exon_variant 0.38
rrl 1474239 n.582G>C non_coding_transcript_exon_variant 0.29
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.29
rrl 1474467 n.810A>C non_coding_transcript_exon_variant 1.0
rrl 1474758 n.1101G>A non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 1.0
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 1.0
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 1.0
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 1.0
rrl 1474798 n.1141C>T non_coding_transcript_exon_variant 1.0
rrl 1474804 n.1147C>T non_coding_transcript_exon_variant 1.0
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 1.0
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 1.0
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.98
rrl 1474869 n.1212G>C non_coding_transcript_exon_variant 0.98
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.96
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.96
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.96
rrl 1474913 n.1256T>A non_coding_transcript_exon_variant 0.94
rrl 1474920 n.1263G>A non_coding_transcript_exon_variant 0.93
rrl 1474927 n.1271delC non_coding_transcript_exon_variant 0.82
rrl 1474931 n.1274G>A non_coding_transcript_exon_variant 0.82
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.71
rrl 1475154 n.1497C>A non_coding_transcript_exon_variant 0.22
rrl 1475167 n.1510T>A non_coding_transcript_exon_variant 0.22
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.3
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.27
rrl 1475707 n.2050T>A non_coding_transcript_exon_variant 0.25
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.31
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.33
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.4
rrl 1475751 n.2094C>G non_coding_transcript_exon_variant 0.3
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.3
rrl 1475756 n.2100_2101insGGGGAA non_coding_transcript_exon_variant 0.3
rrl 1475761 n.2106_2113delCAAGGGTG non_coding_transcript_exon_variant 0.3
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.3
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.3
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.3
rrl 1475782 n.2125T>C non_coding_transcript_exon_variant 0.3
rrl 1475783 n.2126T>G non_coding_transcript_exon_variant 0.3
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.45
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.45
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.43
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.43
rrl 1475843 n.2186G>A non_coding_transcript_exon_variant 0.27
rrl 1475849 n.2192G>A non_coding_transcript_exon_variant 0.22
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.4
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.42
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.46
rrl 1476165 n.2508T>C non_coding_transcript_exon_variant 0.46
rrl 1476181 n.2524A>C non_coding_transcript_exon_variant 0.5
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.45
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.45
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.45
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.45
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.5
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.5
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.5
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.5
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.5
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.5
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.5
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.53
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.71
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.76
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.92
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.92
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.94
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.94
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.93
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.93
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.92
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.93
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 0.93
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.94
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.94
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.95
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.94
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.94
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.94
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.96
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.96
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.97
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.97
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.97
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.95
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.95
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.96
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.96
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.97
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.95
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.94
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.94
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.93
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.94
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.94
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.93
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.92
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.92
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.91
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.92
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.93
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.92
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.91
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.9
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.88
rrl 1476595 n.2938C>T non_coding_transcript_exon_variant 0.87
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.81
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.81
rrl 1476621 n.2964C>A non_coding_transcript_exon_variant 0.68
rrl 1476624 n.2967T>A non_coding_transcript_exon_variant 0.47
rpsA 1834166 p.Gly209Arg missense_variant 1.0
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102193 p.Arg284Trp missense_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2153942 p.Phe724Ile missense_variant 0.17
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
katG 2156162 c.-51G>A upstream_gene_variant 0.14
katG 2156207 c.-96T>C upstream_gene_variant 0.13
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168319 p.Thr765Ile missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
eis 2715125 p.Thr70Ala missense_variant 1.0
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
ddn 3986916 p.Asn25Asp missense_variant 0.11
clpC1 4038403 c.2302T>C synonymous_variant 1.0
embC 4240671 p.Thr270Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246625 p.Phe38Leu missense_variant 0.11
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4408237 c.-35C>A upstream_gene_variant 1.0