EBG00000313339 - n.2950C>T
Drug resistance types
138 Sensitive
26 RR-TB
13 HR-TB
29 MDR-TB
14 Pre-XDR-TB
0 XDR-TB
111 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 60 |
| lineage3 | 12 |
| lineage4.3.4.2.1 | 18 |
| lineage4.1.2.1 | 6 |
| lineage4.1.2 | 10 |
| lineage4.9;lineage5.1.1 | 1 |
| La1.8.1 | 16 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1 | 71 |
| lineage4 | 2 |
| lineage4.6.5 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.3.4.1 | 6 |
| lineage4.2.1 | 3 |
| lineage4.4.1.1 | 14 |
| lineage4.1.1.1 | 6 |
| lineage4.8 | 11 |
| lineage4.5 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.3 | 13 |
| lineage4.1.1.3 | 5 |
| lineage3.1.1 | 3 |
| lineage4.6.2.2 | 2 |
| lineage1.1.1.1 | 2 |
| La1.6 | 3 |
| lineage4.4.1.2 | 2 |
| lineage1.2.2.1;lineage4 | 1 |
| lineage4.1.3 | 1 |
| lineage4.2.2.1 | 1 |
| lineage3.1;lineage4.1.2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.2.2 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage6.1.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.1.1 | 1 |
| La1.8.X-unk6 | 1 |
| lineage4.2.2.2 | 2 |
| lineage2.2.1;lineage4.9 | 2 |
| La1.7.1 | 1 |
| lineage4.3.2.1 | 8 |
| La1.2 | 2 |
| lineage4.1.2.1.1 | 1 |
| La1.4 | 1 |
| lineage1.1.3.2 | 2 |
| lineage4.7 | 2 |
| La1.2.BCG | 2 |
| lineage1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage5.1.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.8.1 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| 1 | |
| La2 | 1 |
| lineage4.3.2.1;lineage4.9 | 1 |
| lineage1.2.1.2 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.2.2 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 331 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR190388 | Sensitive | lineage4.9 | None | SRR1140716 | Other | lineage3 | None | SRR6982099 | Sensitive | lineage4.3.4.2.1 | None | ERR2653138 | MDR-TB | lineage4.1.2.1 | None | SRR6855967 | Sensitive | lineage4.1.2 | None | ERR1082121 | Sensitive | lineage4.9;lineage5.1.1 | None | ERR5162133 | Sensitive | La1.8.1 | None | SRR6982105 | Sensitive | lineage2.2.1.1 | None | SRR11871419 | Pre-XDR-TB | lineage2.2.1 | None | SRR16295775 | Other | lineage2.2.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SAMN02585942 | Sensitive | lineage4.1.2 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR2179857 | Sensitive | lineage4 | None | ERR161014 | Sensitive | lineage4.3.4.2.1 | None | ERR4814745 | Other | lineage4.6.5 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR2101689 | Sensitive | lineage4.3.4.1 | None | SRR3675552 | Other | lineage4.9 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR6045205 | Sensitive | lineage4.9 | None | SRR7240324 | Other | La1.8.1 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR7645856 | Sensitive | lineage4.4.1.1 | None | ERR4769506 | Sensitive | lineage4.9 | None | SRR16295744 | Other | lineage2.2.1 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR6855718 | Sensitive | lineage4.8 | None | SRR1173515 | Sensitive | lineage4.9 | None | SRR6982076 | Sensitive | lineage4.9 | None | SRR2101681 | Sensitive | lineage4.8 | None | SRR6982022 | Sensitive | lineage4.4.1.1 | None | ERR4769507 | Sensitive | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR21714045 | Other | lineage2.2.1 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR323068 | Sensitive | lineage4.9 | None | SRR6982195 | Sensitive | lineage4.4.1.1 | None | SRR6982227 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR5007155 | Sensitive | lineage4.1.2.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR2101803 | Sensitive | lineage4.3.3 | None | SRR6896255 | Sensitive | lineage4.3.3 | None | SRR6982313 | Sensitive | lineage4.3.4.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR6982229 | Sensitive | lineage2.2.1 | None | SRR7444102 | Sensitive | lineage4.9 | None | ERR4816417 | Other | lineage4.9 | None | ERR4769424 | Sensitive | lineage4.9 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR2660499 | Sensitive | lineage4.1.1.3 | None | SRR6982011 | Sensitive | lineage4.1.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820193 | Other | lineage3 | None | ERR978766 | RR-TB | lineage4.8 | None | DRR184913 | Sensitive | lineage2.2.1 | None | SRR6982484 | Other | lineage3.1.1 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818831 | Other | lineage3 | None | SRR7236330 | Other | La1.8.1 | None | SRR16295765 | Other | lineage2.2.1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR3324325 | MDR-TB | lineage4.6.2.2 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | DRR099689 | Sensitive | lineage1.1.1.1 | None | SRR10993953 | Other | La1.6 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR6855917 | Sensitive | lineage4.8 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR1792265 | Other | La1.8.1 | None | ERR473303 | Sensitive | lineage4.9 | None | SRR16295808 | Other | lineage2.2.1 | None | SRR6982106 | Sensitive | lineage4.8 | None | ERR736822 | Sensitive | lineage4.4.1.2 | None | SRR16295743 | Other | lineage2.2.1 | None | SRR16295751 | Other | lineage2.2.1 | None | ERR212100 | Sensitive | lineage1.2.2.1;lineage4 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR16295809 | Other | lineage2.2.1 | None | SRR16295810 | Other | lineage2.2.1 | None | SRR6044925 | Sensitive | lineage4.9 | None | SRR16295741 | Other | lineage2.2.1 | None | SRR16295816 | Other | lineage2.2.1 | None | ERR7737918 | MDR-TB | lineage4.2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR6856119 | Sensitive | lineage2.2.1 | None | SRR6896178 | Sensitive | lineage2.2.1 | None | SRR7504773 | Sensitive | lineage4.9 | None | SRR2101625 | Other | lineage3.1;lineage4.1.2 | None | SRR6982385 | Sensitive | lineage4.1.2 | None | ERR3283046 | Sensitive | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR6982037 | Sensitive | lineage4.1.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR7444074 | Sensitive | lineage4.9 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR1023250 | Sensitive | lineage6.1.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR8025347 | Sensitive | lineage4.9 | None | SRR5152926 | MDR-TB | lineage2.2.1 | None | SRR16295746 | Other | lineage2.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR2101786 | Sensitive | lineage4.4.1.1 | None | ERR323036 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6982014 | Sensitive | lineage4.1.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR6982558 | Sensitive | lineage4.3.4.2.1 | None | SRR7240420 | Other | La1.8.X-unk6 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR7240537 | Other | La1.8.1 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR6982398 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4188255 | Sensitive | lineage4.9 | None | ERR4627379 | Other | La1.8.1 | None | ERR867569 | Other | lineage4.9 | None | SRR16295830 | Other | lineage2.2.1 | None | ERR4769482 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR18391772 | Other | La1.7.1 | None | SRR6981981 | Sensitive | lineage4.3.3 | None | SRR2101637 | RR-TB | lineage4.4.1.1 | None | ERR987719 | HR-TB | lineage3 | None | ERR176475 | Sensitive | lineage4.3.4.2.1 | None | SRR6896339 | MDR-TB | lineage2.2.1 | None | SRR2101312 | MDR-TB | lineage2.2.1 | None | SRR16295813 | Other | lineage2.2.1 | None | SRR6982048 | Sensitive | lineage4.3.2.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR4769503 | Other | La1.2 | None | SRR16295801 | Other | lineage2.2.1 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6982514 | Sensitive | lineage4.3.3 | None | SRR21675637 | Sensitive | lineage4.3.3 | None | ERR9786258 | Sensitive | lineage4.3.4.1 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR16295777 | Other | lineage2.2.1 | None | ERR760877 | MDR-TB | lineage4.1.2.1.1 | None | SRR16295763 | Other | lineage2.2.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR18002945 | Other | lineage2.2.1 | None | SRR16295819 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR6855915 | Sensitive | lineage4.9 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR16278273 | Other | La1.4 | None | ERR3283044 | Other | lineage4 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR7240506 | Other | La1.8.1 | None | SRR6982175 | Sensitive | lineage1.1.3.2 | None | SRR16295812 | Other | lineage2.2.1 | None | SRR6982405 | Sensitive | lineage4.4.1.1 | None | SRR6982337 | Sensitive | lineage4.7 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | SRR2101663 | Sensitive | lineage1.1.3.2 | None | SRR1915484 | Other | La1.2.BCG | None | ERR4769493 | Other | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR7240350 | Other | La1.8.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR6981975 | Sensitive | lineage4.7 | None | SRR6982198 | HR-TB | lineage1 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR16295769 | Other | lineage2.2.1 | None | SRR16295773 | Other | lineage2.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR6153231 | Sensitive | lineage4.4.1.2 | None | SRR6855851 | Other | lineage4.3.4.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR2101595 | RR-TB | lineage4.3.4.2.1 | None | ERR245809 | Sensitive | lineage4.3.4.1 | None | SRR12199468 | Sensitive | lineage4.9 | None | SRR6896340 | Sensitive | lineage4.4.1.1 | None | SRR6982077 | Sensitive | lineage4.3.2.1 | None | SRR16295761 | Other | lineage2.2.1 | None | ERR502480 | Other | lineage5.1.1 | None | SRR7444098 | Sensitive | lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11972274 | RR-TB | lineage1.2.1.2.1 | None | SRR13199734 | Other | La1.2 | None | SRR21657198 | HR-TB | lineage4.3.3 | None | SRR1182994 | Sensitive | lineage4.1.2 | None | ERR212033 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | ERR4188187 | Sensitive | La1.8.1 | None | SAMN02350446 | Sensitive | lineage2.2.1 | None | SRR2101617 | Sensitive | lineage4.1.1.1 | None | SRR7443751 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR7069391 | Other | lineage4.9 | None | SRR7443747 | Sensitive | lineage4.9 | None | SRR2101802 | Sensitive | lineage4.4.1.1 | None | SRR6981968 | Sensitive | lineage4.1.2 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR15522850 | HR-TB | lineage1.1.2 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR6257046 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982213 | Sensitive | lineage4.3.2.1 | None | ERR4816322 | Other | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR16295742 | Other | lineage2.2.1 | None | SRR16295766 | Other | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR7645853 | MDR-TB | lineage2.2.1 | None | ERR4188253 | Other | La1.8.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR1082134 | Sensitive | lineage5.1.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR6981922 | Sensitive | lineage4.3.2.1 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR16295749 | Other | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR6982057 | HR-TB | lineage4.3.3 | None | ERR736805 | Sensitive | lineage2.2.1 | None | SRR1180237 | Sensitive | lineage4.1.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR16295752 | Other | lineage2.2.1 | None | SRR1181085 | Sensitive | lineage4.1.2 | None | SRR6982328 | Sensitive | lineage3.1.1 | None | SRR11342669 | Other | lineage4.8 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR7240398 | Other | La1.8.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR2101540 | Sensitive | lineage4.3.2.1 | None | SRR6046117 | Other | lineage4.9 | None | ERR867575 | Other | lineage4.9 | None | ERR4627392 | Other | La1.8.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3335798 | MDR-TB | lineage2.2.1 | None | ERR5311088 | Sensitive | La1.8.1 | None | SRR1049672 | Other | lineage3 | None | SRR2101693 | Sensitive | lineage4.1.2 | None | ERR2446509 | Other | lineage3 | nl | SRR6982196 | Sensitive | None | SRR7236233 | Other | La1.8.1 | None | SRR6982148 | Sensitive | lineage2.2.1 | None | SRR6982026 | Sensitive | lineage4.3.3 | None | SRR6982414 | Sensitive | lineage4.9 | None | ERR867554 | Other | lineage4.3.4.1 | None | ERR4816852 | Other | lineage4.9 | None | SRR13888750 | Other | La2 | None | ERR5311086 | Sensitive | lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR11342689 | Other | lineage4.1.2.1 | None | SRR10851629 | Sensitive | lineage4.3.3 | None | ERR4188213 | Other | La1.8.1 | None | ERR867572 | Other | lineage4.9 | None | SRR16295811 | Other | lineage2.2.1 | None | SRR6856032 | Sensitive | lineage2.2.1 | None | ERR161170 | Sensitive | lineage4.3.4.1 | None | SRR10993957 | Other | La1.6 | None | SRR6982427 | Sensitive | lineage4.1.1.1 | None | SRR6855721 | Sensitive | lineage4.3.2.1 | None | SRR6982035 | Sensitive | lineage4.3.2.1;lineage4.9 | None | SRR6982090 | RR-TB | lineage4.4.1.1 | None | SRR6982146 | Sensitive | lineage4.1.1.3 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR7443726 | Sensitive | lineage4.9 | None | SRR1196545 | Sensitive | lineage4.9 | None | ERR2307789 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR6982509 | Sensitive | lineage4.3.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR3797007 | Other | La1.8.1 | None | SRR17856664 | Sensitive | lineage3 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR6982056 | Other | lineage4.3.4.2.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR1181242 | Sensitive | lineage4.1.2 | None | SRR5152904 | Other | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR2101827 | Sensitive | lineage4.3.4.2.1 | None | SRR2101773 | Sensitive | lineage4.3.4.2.1 | None | ERR4769419 | Sensitive | lineage4.9 | None | DRR188816 | Sensitive | lineage4.2.2 | None | SRR16295804 | Other | lineage2.2.1 | None | SRR1915485 | Other | La1.2.BCG | None | SRR16295772 | Other | lineage2.2.1 | None | SRR1011488 | Sensitive | lineage2.2.1 | None | SRR16295760 | Other | lineage2.2.1 | None | SRR6982332 | Sensitive | lineage4.4.1.1 | None | SRR16295782 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR867573 | Other | lineage4.9 | None | SRR16295770 | Other | lineage2.2.1 | None | SRR9970983 | MDR-TB | lineage4.3.3 | None | SRR1062859 | Sensitive | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR6981939 | Sensitive | lineage4.3.4.2.1 | None | SRR6981978 | Sensitive | lineage4.3.4.2.1 | None | SRR6982058 | HR-TB | lineage2.2.1 | None | SRR6982102 | Sensitive | lineage2.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6855963 | Sensitive | lineage2.2.1 | None | SRR6856087 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6982043 | Sensitive | lineage4.4.1.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR6982050 | Sensitive | lineage4.3.4.1 | None | ERR2660498 | Sensitive | lineage4.3.4.2.1 | None | SRR6981993 | Sensitive | lineage4.3.2.1 | None | SRR16295817 | Other | lineage2.2.1 | None | ERR3275190 | Other | lineage3 | nl | SRR21240055 | Other | lineage4.1.2.1 | None |
|---|
