Run ID: ERR7737918
Sample name:
Date: 02-04-2023 05:35:10
Number of reads: 2263929
Percentage reads mapped: 75.29
Strain: lineage4.2.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 1.0 |
lineage4.2.2.1 | Euro-American | LAM7-TUR | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288961 | p.Phe94Ser | missense_variant | 1.0 | pyrazinamide |
embB | 4247429 | p.Met306Val | missense_variant | 1.0 | ethambutol |
gid | 4408100 | c.102delG | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576077 | c.730C>T | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.31 |
rpoC | 764844 | p.Ala492Val | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472129 | n.284G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472253 | n.408G>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472271 | n.426T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472518 | n.673G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472544 | n.699C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472579 | n.734G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472599 | n.754G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472606 | n.761C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472645 | n.800G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472672 | n.828_838delTTTCCTTCCTT | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472733 | n.888G>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472742 | n.897C>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472779 | n.934G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473054 | n.1209C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473083 | n.1238G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475144 | n.1487G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475154 | n.1497C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475155 | n.1498A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475163 | n.1506T>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.51 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.61 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1475877 | n.2220C>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1475880 | n.2223C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475881 | n.2224T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475882 | n.2225C>G | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475895 | n.2238C>A | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475902 | n.2245T>C | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475914 | n.2257C>T | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475916 | n.2259C>A | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475920 | n.2263G>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1475924 | n.2267A>G | non_coding_transcript_exon_variant | 0.7 |
rrl | 1475933 | n.2276C>G | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475939 | n.2282G>C | non_coding_transcript_exon_variant | 0.66 |
rrl | 1475944 | n.2287G>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.53 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476135 | n.2478T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476197 | n.2540T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476209 | n.2552A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476242 | n.2585C>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476251 | n.2594T>A | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476265 | n.2608G>A | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476427 | n.2770G>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476596 | n.2939C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476601 | n.2944G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476607 | n.2950C>T | non_coding_transcript_exon_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3066280 | c.-89C>T | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.22 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |