EBG00000313339 - n.2209T>A


Drug resistance types
114 Sensitive 14 RR-TB 28 HR-TB 39 MDR-TB 18 Pre-XDR-TB 0 XDR-TB 187 Other
lineage Counts
lineage Count
lineage4.6.1.1 7
lineage4.3.2.1 9
lineage4.5 3
lineage4.9 76
lineage3 19
lineage4.3.3 17
lineage2.2.1.1 8
lineage2.2.1 48
lineage5.1.1 1
lineage3.1.2.1 1
lineage1.2.2.1 3
lineage4.4 2
lineage4 11
lineage6.1.3 1
La1.2 6
lineage3.1.1 6
lineage4.8 23
lineage4.1.1.3 6
lineage3.1 1
lineage4.2.2.2 5
lineage4.3.1.1 3
lineage4.1.1.3.1 3
lineage4.2 1
lineage4;lineage3 1
lineage4.1.1 8
lineage4.4.1.1 9
lineage3.1.2.2 2
lineage4.1.1.2 1
lineage4.1.2.1 14
15
lineage3.1.2 2
lineage4.7 4
lineage4.1.2 2
lineage1.1.2 4
lineage4.2.1.1 1
lineage4.3.2 2
lineage4.6.2.2 1
lineage4.8.1 2
lineage4;lineage2.2.1 1
lineage2.2 3
lineage4.3.4.2.1 9
lineage4.2.1 2
lineage4.3.4.2 6
lineage4.4.2 1
lineage4.3 1
lineage4;lineage2 1
La1.8.1 8
lineage6.3.1 1
lineage4.8;lineage4.2.1 1
lineage4.6.1.2 3
lineage4.3.4.1 4
lineage4.9;lineage4.3.4 1
lineage4.1.4 1
La1 1
lineage4.2.2.2;lineage3 1
La1.7.1 2
La1.3 1
La1.8.2 4
lineage5.1.3 1
lineage4.2.2.1 1
lineage4;lineage1.2.2.1 1
lineage1.2.2.2 3
lineage4.9;lineage2.2 2
lineage4.6.1.2;lineage4.4.1.1 2
lineage4.4.1.1.1 3
lineage4.3.4 1
lineage4.9;lineage1.1 1
lineage1.1.3.2 1
lineage4.9;lineage4.3.4.1 1
lineage4.9.1 1
La2 1
lineage4.6.1 1
spoligotype Counts
spoligotype Count
None 400
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR1199009 Sensitive lineage4.6.1.1 None
SRR4037619 Sensitive lineage4.3.2.1 None
ERR2179695 Sensitive lineage4.5 None
ERR1199087 Sensitive lineage4.6.1.1 None
SRR5341375 Other lineage4.9 None
SRR5007165 MDR-TB lineage3 None
SRR5074711 Sensitive lineage4.3.3 None
ERR1199001 Sensitive lineage4.6.1.1 None
SAMN02350447 Sensitive lineage2.2.1.1 None
SRR5152936 MDR-TB lineage2.2.1 None
ERR1082126 Sensitive lineage5.1.1 None
ERR4820266 RR-TB lineage3 None
SRR5341417 Pre-XDR-TB lineage3 None
SRR5341429 HR-TB lineage3.1.2.1 None
SAMN02350450 Sensitive lineage1.2.2.1 None
ERR4820187 Other lineage4.3.3 None
SRR5341306 Pre-XDR-TB lineage4.4 None
SAMN02584601 Other lineage2.2.1 None
SRR5341317 Pre-XDR-TB lineage3 None
SRR5341467 Other lineage4 None
SRR6045496 Other lineage6.1.3 None
SAMN02350456 Sensitive lineage4.3.2.1 None
SRR5486086 Other La1.2 None
ERR2693238 HR-TB lineage4.9 None
SRR5526841 MDR-TB lineage2.2.1.1 None
SRR6045516 Other lineage3.1.1 None
SRR6045614 Other lineage4.8 None
SRR6045553 RR-TB lineage4.9 None
SRR6045599 Other lineage4.8 None
SRR6045537 Pre-XDR-TB lineage2.2.1 None
SRR6045621 Other lineage4.1.1.3 None
SRR6045763 Pre-XDR-TB lineage2.2.1 None
SRR6045705 Other lineage4.9 None
SRR6045778 Other lineage3.1 None
SRR6044774 Other lineage3 None
SRR6045843 Other lineage4.2.2.2 None
SRR6045805 Other lineage4.3.1.1 None
SRR6044787 Other lineage4.4 None
SRR6044817 Other lineage3 None
SRR6044873 Other lineage4.1.1.3.1 None
SRR6044838 Other lineage4.9 None
SRR6045909 Other lineage4.8 None
SRR6045925 Other lineage4.2 None
SRR6045036 Other lineage4;lineage3 None
SRR6044904 Other lineage3 None
SRR6044916 Other lineage4.1.1 None
SRR6044958 Other lineage4.4.1.1 None
SRR6045017 Other lineage3.1.2.2 None
SRR6044993 Other lineage3 None
SRR6045045 Other lineage2.2.1 None
SRR6045024 Other lineage4.1.1.2 None
SRR6045986 Other lineage3 None
SRR6045064 Other lineage4.3.1.1 None
SRR6045071 Other lineage4.3.1.1 None
SRR6045158 Other lineage4.9 None
SRR6045124 Other lineage4.9 None
SRR6045110 Other lineage3 None
SRR6045164 Other lineage4.1.2.1 None
SRR6046208 Other lineage4 None
SRR6045178 Other lineage3 None
SRR6045205 Sensitive lineage4.9 None
SRR6046541 Other lineage4.9 None
SRR6045267 RR-TB lineage4 None
SRR6045379 Other None
SRR6046246 Other lineage3 None
SRR6046273 Other lineage3.1.2 None
SRR6046359 Other lineage4.7 None
SRR6046456 Other lineage4.1.1.3.1 None
SRR6046497 Other lineage4.9 None
SRR6046517 Other lineage4.8 None
SRR6046521 Other lineage4.4.1.1 None
SRR6045248 Other lineage3.1.1 None
SRR6045289 Other None
SRR6045384 Other lineage4.1.2 None
SRR6045399 Other None
SRR6046275 Other lineage3.1.1 None
SRR6046343 Other lineage2.2.1 None
ERR2851371 Other lineage4.9 None
SRR6046655 Other lineage4.1.2.1 None
SRR6046607 Other lineage3 None
SRR6046874 Other lineage4.5 None
SRR6046752 Sensitive lineage4.2.2.2 None
SRR6046766 Other lineage3.1.1 None
SRR6046729 Other None
SRR6046739 Other lineage1.1.2 None
SRR6046815 Other lineage3 None
SRR6982078 Sensitive None
SRR6153036 Other None
SRR6397727 Other lineage4.2.1.1 None
SRR6152979 Other lineage4.7 None
SRR6397770 Other lineage4.7 None
SRR6480593 Sensitive lineage4.1.2.1 None
ERR3148546 Other lineage4.3.2 None
ERR502483 Sensitive lineage4.9 None
ERR502472 Other lineage4.6.2.2 None
ERR502482 Sensitive lineage4.9 None
ERR502484 Sensitive lineage4.9 None
ERR502498 Sensitive lineage4.9 None
ERR502485 Sensitive lineage4.9 None
ERR502489 Sensitive lineage4.9 None
ERR502493 Sensitive lineage4.9 None
ERR502486 Sensitive lineage4.9 None
ERR502490 Sensitive lineage4.9 None
ERR502492 Sensitive lineage4.9 None
SRR6982414 Sensitive lineage4.9 None
SRR6856087 Sensitive lineage4 None
SRR6982410 Other lineage4.8.1 None
SRR6982115 Sensitive lineage4 None
ERR502497 Sensitive lineage4.9 None
SRR6856119 Sensitive lineage2.2.1 None
SRR6982102 Other lineage2.2.1 None
SRR6896162 Sensitive lineage4.9 None
SRR6982104 Sensitive lineage2.2.1 None
SRR6982418 Sensitive lineage4.1.1.3 None
SRR6982138 Sensitive lineage4 None
SRR6982139 Sensitive lineage4.9 None
SRR6896340 HR-TB lineage4.4.1.1 None
SRR6785301 Sensitive lineage2.2.1 None
SRR6785282 Other lineage4.3.3 None
SRR6982275 Other lineage2.2.1 None
SRR6982196 Sensitive None
SRR6982229 Sensitive lineage2.2.1 None
SRR6982448 Sensitive lineage4;lineage2.2.1 None
SRR6896348 Sensitive lineage4.1.2.1 None
SRR6982178 Sensitive lineage2.2 None
SRR6982313 Sensitive lineage4.3.4.2.1 None
SRR6982297 Sensitive lineage4.1.1 None
SRR6807688 Pre-XDR-TB lineage4.2.1 None
SRR6982465 Sensitive lineage4.3.4.2 None
SRR6797751 MDR-TB lineage2.2.1 None
SRR6982337 Sensitive lineage4.7 None
SRR6981912 Sensitive None
SRR6982472 Sensitive lineage4.4.1.1 None
SRR6981922 Sensitive lineage4.3.2.1 None
SRR6824357 Pre-XDR-TB lineage4.4.2 None
SRR6855718 Sensitive lineage4.8 None
SRR6982371 Sensitive lineage4.1.1 None
SRR6982362 Other lineage4.3.2.1 None
SRR6982383 Other lineage4.3.2.1 None
SRR6982471 Sensitive lineage2.2.1 None
SRR6824572 MDR-TB lineage2.2.1 None
SRR6855917 Other lineage4.8 None
SRR6982014 Other lineage4.1.1 None
SRR6982026 Sensitive lineage4.3.3 None
SRR6982035 Sensitive lineage4.9 None
SRR6982398 MDR-TB lineage2.2 None
SRR6855963 RR-TB lineage2.2.1 None
SRR6982057 Pre-XDR-TB lineage4.3 None
SRR6982058 HR-TB lineage2.2.1 None
SRR6982405 Sensitive None
SRR6982076 Sensitive lineage4.9 None
SRR6982077 MDR-TB lineage4.3.2.1 None
SRR6856032 Sensitive lineage2.2.1 None
SRR847801 Pre-XDR-TB lineage4.3.3 None
SRR6982510 Sensitive lineage4;lineage2 None
SRR7131096 Other lineage4.8 None
SRR7131122 Other lineage2.2.1 None
ERR5311080 Other La1.8.1 None
SRR7131030 Other lineage4.1.2.1 None
SRR7131047 MDR-TB lineage4.3.3 None
SRR7131053 Other lineage2.2.1 None
SRR8073606 Other La1.8.1 None
SRR7131123 Other lineage4.8 None
SRR7131169 Other lineage4.1.2.1 None
SRR7131185 Other lineage4.1.2.1 None
SRR7131195 Other lineage2.2.1 None
SRR7131220 Other lineage4.1.2.1 None
SRR7131251 Other lineage2.2.1 None
SRR7131287 Other lineage2.2.1.1 None
SRR7131294 Other lineage6.3.1 None
SRR7645834 Other lineage2.2.1 None
SRR7645808 HR-TB lineage4.8;lineage4.2.1 None
SRR9971195 MDR-TB lineage4.3.3 None
SRR7645900 Sensitive lineage4.8 None
SRR7755767 Sensitive lineage4.3.3 None
ERR036215 Other lineage4.8 None
ERR323061 Sensitive lineage4.9 None
ERR036194 Other lineage4.6.1.2 None
ERR10796618 Other lineage4.3.4.1 None
ERR037234 Sensitive lineage4.9 None
ERR037235 Sensitive lineage4.9 None
ERR10796566 Other lineage4.9;lineage4.3.4 None
ERR037529 Other lineage4.3.4.2.1 None
ERR072033 Sensitive lineage3.1.2.2 None
ERR10796562 Other lineage4.3.4.1 None
ERR10796630 HR-TB None
ERR10796625 RR-TB lineage4.4.1.1 None
ERR1144989 Sensitive lineage4.8 None
ERR126603 Sensitive lineage4.3.3 None
ERR137226 MDR-TB lineage2.2.1 None
ERR144568 Pre-XDR-TB None
ERR3261389 Other lineage4.9 None
ERR3797043 HR-TB None
ERR3324328 MDR-TB lineage2.2.1 None
ERR3324329 HR-TB lineage4.1.1.3 None
ERR3324331 MDR-TB lineage4.3.4.1 None
ERR3324347 Sensitive lineage4.1.2.1 None
ERR3324351 MDR-TB lineage4.1.4 None
ERR3324362 HR-TB lineage4.1.2.1 None
ERR3324373 MDR-TB lineage2.2.1 None
ERR3439285 Sensitive lineage4.9 None
ERR3261359 Other lineage4.9 None
ERR4187995 Other La1.8.1 None
ERR4132447 HR-TB lineage4 None
ERR4188396 Sensitive La1 None
ERR4188010 Other La1.8.1 None
ERR4188035 Other La1.8.1 None
ERR4188158 Other lineage4.9 None
ERR4188330 Other La1.8.1 None
ERR4596929 MDR-TB lineage4.2.2.2;lineage3 None
ERR4450956 Other La1.7.1 None
ERR4769429 Other lineage4.9 None
ERR4769424 Sensitive lineage4.9 None
ERR4769472 Other lineage4.9 None
ERR4769507 Sensitive lineage4.9 None
ERR4769505 Other lineage4.9 None
ERR4769525 Sensitive lineage4.9 None
ERR4769546 Other La1.3 None
ERR4769527 Sensitive lineage4.9 None
ERR5865343 MDR-TB lineage2.2.1 None
ERR4772206 Other La1.2 None
ERR5865118 MDR-TB lineage2.2.1 None
ERR5987345 Pre-XDR-TB lineage2.2.1 None
ERR5987396 MDR-TB lineage4.3.2 None
ERR6197032 Other lineage4.9 None
ERR6140667 Other La1.8.2 None
ERR6149870 Other La1.8.2 None
ERR6149874 Other La1.8.2 None
ERR6149876 Other La1.8.2 None
ERR6197024 RR-TB lineage4.9 None
ERR6197040 Other lineage4.9 None
ERR6197044 RR-TB lineage4.9 None
ERR6197041 MDR-TB lineage4.3.4.2 None
ERR6201843 Other La1.2 None
ERR6198389 Other La1.2 None
ERR6201802 Other La1.2 None
ERR736816 Other lineage4.9 None
ERR5865119 MDR-TB lineage2.2.1 None
ERR751310 Sensitive lineage5.1.3 None
ERR736818 Sensitive lineage4.3.3 None
ERR736867 HR-TB None
ERR7737736 MDR-TB lineage2.2.1 None
ERR751317 Sensitive lineage4.9 None
ERR773795 Sensitive lineage4.3.4.2 None
ERR7737918 MDR-TB lineage4.2.2.1 None
ERR779680 Sensitive lineage4.3.4.2.1 None
ERR7801178 Other lineage4.3.4.2.1 None
ERR7801177 Other lineage4.3.4.2.1 None
ERR036225 Other lineage4.3.4.2.1 None
ERR176619 Sensitive lineage4.9 None
ERR212112 Sensitive lineage4;lineage1.2.2.1 None
ERR037535 Sensitive lineage4.3.4.2.1 None
ERR9117699 Other lineage4.1.2.1 None
ERR9117714 Other lineage3.1.2 None
ERR9117728 Other lineage3 None
ERR9117730 Other lineage1.1.2 None
ERR9117740 Other lineage3.1.1 None
ERR9117747 HR-TB lineage4.8 None
ERR9117750 HR-TB lineage4.5 None
ERR9117806 Other lineage4.8 None
ERR9117827 Other lineage1.2.2.2 None
ERR987695 HR-TB lineage4.3.4.2 None
ERR987704 HR-TB lineage4.6.1.2 None
ERR987733 RR-TB lineage4.6.1.1 None
ERR987734 HR-TB lineage4.3.4.2 None
ERR987757 MDR-TB lineage4.6.1.2 None
ERR987766 HR-TB lineage4.3.3 None
ERR9992658 HR-TB lineage2.2.1 None
SRR1011489 Sensitive lineage2.2.1.1 None
SRR1011492 Sensitive lineage1.2.2.1 None
SRR1049030 Pre-XDR-TB lineage4.9 None
SRR1019127 Other lineage4.9;lineage2.2 None
SRR1019130 Sensitive lineage4.3.2.1 None
SRR10315465 MDR-TB lineage4.4.1.1 None
SRR1049564 HR-TB lineage4.6.1.2;lineage4.4.1.1 None
SRR1049031 HR-TB lineage4.9 None
SRR1062863 Sensitive lineage1.2.2.1 None
SRR1049569 Sensitive lineage4.2.2.2 None
SRR1049568 Sensitive lineage4.2.2.2 None
SRR1062861 Sensitive lineage4.1.2 None
SRR10851730 Other lineage4.3.3 None
SRR10869160 Sensitive lineage2.2.1.1 None
SRR11349188 MDR-TB lineage4.1.2.1 None
SRR1140625 Pre-XDR-TB lineage3 None
SRR1140927 Sensitive lineage4.3.2.1 None
SRR1159158 Other lineage2.2.1 None
SRR1166110 Other lineage2.2.1 None
SRR1062860 Sensitive lineage2.2.1.1 None
SRR1062932 Pre-XDR-TB lineage3 None
SRR10869203 Pre-XDR-TB lineage4.1.1.3 None
SRR1140691 HR-TB lineage4.6.1.2;lineage4.4.1.1 None
SRR1140942 Other None
SRR1162501 Other lineage2.2.1 None
SRR1169145 MDR-TB lineage4.1.1 None
SRR1169017 Other lineage2.2.1 None
SRR1172753 MDR-TB lineage4.4.1.1.1 None
SRR1169301 Pre-XDR-TB lineage4.1.1.3 None
SRR1172177 MDR-TB lineage4.1.1 None
SRR1173040 MDR-TB lineage4.4.1.1.1 None
SRR1172808 Other lineage4.9 None
SRR1172816 MDR-TB lineage4.3.3 None
SRR1173025 Other lineage4.9 None
SRR1173113 RR-TB lineage4.3.4 None
SRR1173074 Other lineage4.9 None
SRR1173190 Sensitive lineage4.9 None
SRR1173139 Sensitive lineage4.9 None
SRR1173521 HR-TB lineage4.9 None
SRR1173384 Other lineage4 None
SRR1173416 Other lineage4.9 None
SRR1173705 Other lineage4.9 None
SRR1173766 Sensitive lineage4.9 None
SRR1175073 Other lineage4.9 None
SRR1180243 MDR-TB lineage4.2.1 None
SRR1175304 MDR-TB lineage4.3.3 None
SRR1180982 Other lineage2.2.1 None
SRR1180252 Other lineage4.9 None
SRR12882020 Other lineage3.1.1 None
SRR1196557 HR-TB lineage4.9;lineage2.2 None
SRR1196582 Other lineage4.9 None
SRR11972383 Sensitive lineage1.1.2 None
SRR12199428 Sensitive lineage4.9;lineage1.1 None
SRR12199465 Sensitive lineage2.2.1.1 None
SRR1181136 Sensitive lineage2.2 None
SRR1181161 Other lineage4.9 None
SRR1181250 Other lineage4.9 None
SRR1181319 Other lineage2.2.1 None
SRR1183080 RR-TB lineage4.9 None
SRR1183958 Other lineage2.2.1 None
SRR1184379 Other lineage4 None
SRR1184383 Other lineage4.9 None
SRR11972175 MDR-TB lineage2.2.1 None
SRR11972188 MDR-TB lineage2.2.1 None
SRR11972323 RR-TB lineage1.1.3.2 None
SRR13199734 Other La1.2 None
SRR15368914 MDR-TB lineage2.2.1 None
SRR13423629 MDR-TB lineage2.2.1 None
SRR13591410 Other lineage4.9;lineage4.3.4.1 None
SRR13628039 Sensitive lineage4.9 None
SRR13861597 Other lineage4.9 None
SRR14164718 HR-TB lineage4.4.1.1 None
SRR13986566 Other La1.7.1 None
SRR15522850 HR-TB lineage1.1.2 None
SRR18002954 Other lineage2.2.1 None
SRR1791940 Other La1.8.1 None
SRR18213684 Pre-XDR-TB lineage4.1.1.3.1 None
SRR2101505 MDR-TB lineage4.9.1 None
SRR18911000 Sensitive lineage2.2.1 None
SRR2101617 Other lineage4.1.1 None
SRR2101628 Other lineage4.3.2.1 None
SRR2101643 Other lineage2.2.1 None
SRR2101684 Other lineage2.2.1.1 None
SRR2101689 Other lineage4.3.4.1 None
SRR2101685 Sensitive lineage4.9 None
SRR21239825 Sensitive lineage4.3.4.2 None
SRR2101803 Sensitive lineage4.3.3 None
SRR21675637 Sensitive lineage4.3.3 None
SRR21728710 Other lineage4.1.1.3 None
SRR22424905 RR-TB lineage4.9 None
SRR21728339 Other lineage3 None
ERR1462610 Other La2 None
SAMN03246352 Pre-XDR-TB lineage2.2.1 cn
SRR5341295 Sensitive lineage1.2.2.2 in
ERR1465744 Sensitive lineage4.1.2.1 None
ERR176780 Sensitive lineage4.9 None
ERR1198988 Sensitive lineage4.6.1.1 None
SRR305201 Sensitive lineage4.9 None
SRR3105736 Other lineage1.2.2.2 None
ERR176482 Sensitive lineage4.3.4.2.1 None
ERR036247 Sensitive lineage4.3.4.2.1 mw
SAMN02419540 Other lineage2.2.1 None
ERR553231 Other lineage4.1.2.1 None
SRR3675288 Other lineage3 None
ERR176740 HR-TB None
ERR2228941 Other lineage4.8 None
ERR190388 Sensitive lineage4.9 None
ERR2229554 Other lineage4.8 None
ERR192071 Other La1.8.1 None
ERR2229033 Other lineage4.8 None
ERR2446456 HR-TB lineage4.4.1.1 None
ERR212015 Sensitive lineage4.8 None
SRR3675557 Other lineage4.9 None
ERR2027255 HR-TB lineage4.4.1.1 None
ERR2229337 Other lineage4.8 None
SAMN02585988 MDR-TB lineage4.4.1.1.1 None
ERR1199039 Sensitive lineage4.6.1 None
ERR1199021 Other lineage4.6.1.1 None
ERR2229780 Other lineage4.9 None
ERR2229332 RR-TB lineage4.8 None
ERR2229336 Other lineage4.8 None
ERR2229358 Other lineage4.8 None
SAMN02380985 Sensitive lineage4.2.2.2 None
ERR2228822 Other lineage4.9 None
ERR2228874 Other lineage4 None
ERR2228859 RR-TB lineage4 None
ERR4817853 Other lineage4.8.1 None
ERR2228873 Other lineage4.8 None
ERR2228888 Other lineage4.8 None
SRR4034769 Other lineage4.1.1 None
ERR1199007 Sensitive lineage4.6.1.1 None
SAMN02585982 MDR-TB lineage4.3.3 None