Run ID: SRR10869160
Sample name:
Date: 02-04-2023 19:41:30
Number of reads: 601687
Percentage reads mapped: 60.88
Strain: lineage2.2.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9286 | p.Ala662Val | missense_variant | 0.14 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.38 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
ccsA | 620718 | c.828G>A | synonymous_variant | 0.14 |
rpoB | 760868 | c.1062C>T | synonymous_variant | 0.12 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302818 | c.-113G>C | upstream_gene_variant | 1.0 |
fbiC | 1303241 | p.Tyr104Cys | missense_variant | 0.13 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472544 | n.699C>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472584 | n.739A>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474824 | n.1167A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474830 | n.1173A>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474869 | n.1212G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475722 | n.2065G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475751 | n.2094C>G | non_coding_transcript_exon_variant | 0.39 |
rrl | 1475752 | n.2095C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475758 | n.2101A>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475763 | n.2106C>A | non_coding_transcript_exon_variant | 0.39 |
rrl | 1475769 | n.2112T>A | non_coding_transcript_exon_variant | 0.39 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475776 | n.2119G>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475869 | n.2212C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476229 | n.2572C>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476251 | n.2594T>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476428 | n.2771C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.11 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154152 | p.Thr654Ala | missense_variant | 0.1 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223014 | p.Tyr51Asn | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714846 | p.Val163Ile | missense_variant | 1.0 |
pepQ | 2859756 | c.663C>T | synonymous_variant | 0.13 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.27 |
Rv2752c | 3064834 | p.Ile453Ser | missense_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.29 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.25 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.4 |
embB | 4248115 | c.1602C>T | synonymous_variant | 1.0 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.2 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |