Rv1173 - c.-113G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
184 Sensitive
21 RR-TB
4 HR-TB
40 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
6 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1;lineage4.3.3 | 1 |
| lineage2.2.1.1 | 248 |
| lineage2.2.1.1;lineage2.2.2 | 2 |
| lineage2.2.1.1;lineage4.3.2.1 | 3 |
| lineage2.2.1.1;lineage4.1.2.1 | 3 |
| lineage2.2.1.1;lineage4 | 3 |
| lineage2.2.1.1;lineage4.1.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 261 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR108127 | Sensitive | lineage2.2.1.1;lineage4.3.3 | za | SRR10869220 | MDR-TB | lineage2.2.1.1 | None | ERR5758457 | Sensitive | lineage2.2.1.1 | None | ERR985424 | RR-TB | lineage2.2.1.1 | None | ERR108128 | Sensitive | lineage2.2.1.1 | za | ERR13286058 | Sensitive | lineage2.2.1.1 | None | SRR10869102 | Sensitive | lineage2.2.1.1 | None | ERR495199 | Sensitive | lineage2.2.1.1 | None | ERR5987241 | MDR-TB | lineage2.2.1.1 | None | ERR13288741 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13289319 | RR-TB | lineage2.2.1.1 | None | ERR13286148 | RR-TB | lineage2.2.1.1 | None | ERR9119914 | MDR-TB | lineage2.2.1.1 | None | ERR495051 | Sensitive | lineage2.2.1.1 | None | SRR29055516 | Sensitive | lineage2.2.1.1 | None | SRR16156272 | MDR-TB | lineage2.2.1.1 | None | SRR16156856 | MDR-TB | lineage2.2.1.1 | None | SRR29056272 | Sensitive | lineage2.2.1.1 | None | SRR29093220 | Sensitive | lineage2.2.1.1 | None | SRR29055521 | Sensitive | lineage2.2.1.1 | None | SRR29093397 | Sensitive | lineage2.2.1.1 | None | SRR10869128 | Sensitive | lineage2.2.1.1 | None | SRR29093989 | Sensitive | lineage2.2.1.1 | None | SRR29093190 | Sensitive | lineage2.2.1.1 | None | SRR29056048 | Sensitive | lineage2.2.1.1 | None | SRR10869127 | Sensitive | lineage2.2.1.1 | None | SRR10869169 | Sensitive | lineage2.2.1.1 | None | ERR970443 | RR-TB | lineage2.2.1.1 | None | SRR29093143 | Sensitive | lineage2.2.1.1 | None | SRR29096842 | Sensitive | lineage2.2.1.1 | None | ERR11044059 | Sensitive | lineage2.2.1.1 | None | SRR10869090 | Sensitive | lineage2.2.1.1 | None | SRR29093148 | Sensitive | lineage2.2.1.1 | None | SRR29055570 | Sensitive | lineage2.2.1.1 | None | SRR29093292 | Sensitive | lineage2.2.1.1 | None | SRR29056302 | Sensitive | lineage2.2.1.1 | None | SRR29093799 | Sensitive | lineage2.2.1.1 | None | ERR4011095 | Sensitive | lineage2.2.1.1 | None | ERR9029409 | Sensitive | lineage2.2.1.1 | None | SRR29056065 | Sensitive | lineage2.2.1.1 | None | ERR4011097 | Sensitive | lineage2.2.1.1 | None | ERR970444 | RR-TB | lineage2.2.1.1 | None | SRR29056106 | Sensitive | lineage2.2.1.1 | None | ERR972804 | RR-TB | lineage2.2.1.1 | None | SRR29093237 | Sensitive | lineage2.2.1.1 | None | SRR29093399 | Sensitive | lineage2.2.1.1 | None | ERR10112878 | MDR-TB | lineage2.2.1.1 | None | SRR10869179 | Sensitive | lineage2.2.1.1 | None | SRR10869216 | HR-TB | lineage2.2.1.1 | None | SRR29055876 | Sensitive | lineage2.2.1.1 | None | SRR10869074 | Sensitive | lineage2.2.1.1 | None | ERR5987400 | MDR-TB | lineage2.2.1.1 | None | SRR29055584 | Sensitive | lineage2.2.1.1 | None | SRR29093291 | Sensitive | lineage2.2.1.1 | None | ERR10610372 | MDR-TB | lineage2.2.1.1 | None | SRR29055558 | Sensitive | lineage2.2.1.1 | None | SRR16156863 | RR-TB | lineage2.2.1.1 | None | ERR9119892 | MDR-TB | lineage2.2.1.1 | None | ERR279520 | Sensitive | lineage2.2.1.1 | None | SRR29056037 | Sensitive | lineage2.2.1.1 | None | ERR5987370 | MDR-TB | lineage2.2.1.1 | None | ERR9119700 | MDR-TB | lineage2.2.1.1 | None | ERR13260450 | Sensitive | lineage2.2.1.1 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR5758458 | Sensitive | lineage2.2.1.1 | None | SRR29093876 | Sensitive | lineage2.2.1.1 | None | SRR29055523 | Sensitive | lineage2.2.1.1 | None | ERR9119995 | MDR-TB | lineage2.2.1.1 | None | ERR985425 | RR-TB | lineage2.2.1.1 | None | SRR29093770 | Sensitive | lineage2.2.1.1 | None | SRR29093101 | Sensitive | lineage2.2.1.1 | None | SRR29093173 | Sensitive | lineage2.2.1.1 | None | SRR29055853 | Sensitive | lineage2.2.1.1 | None | ERR4809165 | Sensitive | lineage2.2.1.1 | za | ERR9119788 | MDR-TB | lineage2.2.1.1 | None | ERR983256 | RR-TB | lineage2.2.1.1 | None | ERR11775663 | Sensitive | lineage2.2.1.1 | None | ERR4809257 | MDR-TB | lineage2.2.1.1;lineage2.2.2 | za | ERR8686168 | Sensitive | lineage2.2.1.1 | None | ERR8686221 | Sensitive | lineage2.2.1.1 | None | ERR8699162 | Sensitive | lineage2.2.1.1 | None | ERR8699790 | RR-TB | lineage2.2.1.1 | None | ERR1023447 | Sensitive | lineage2.2.1.1;lineage4.3.2.1 | None | ERR5987214 | MDR-TB | lineage2.2.1.1 | None | ERR11043479 | Sensitive | lineage2.2.1.1 | None | SRR2101439 | Sensitive | lineage2.2.1.1 | None | ERR1873522 | MDR-TB | lineage2.2.1.1 | za | ERR4821175 | Sensitive | lineage2.2.1.1 | gb | ERR2515644 | Sensitive | lineage2.2.1.1 | za | ERR2515812 | RR-TB | lineage2.2.1.1 | za | ERR2516018 | MDR-TB | lineage2.2.1.1 | za | ERR4011098 | Sensitive | lineage2.2.1.1 | None | SRR29093419 | Sensitive | lineage2.2.1.1 | None | ERR5758456 | Sensitive | lineage2.2.1.1 | None | SRR3725657 | Sensitive | lineage2.2.1.1 | None | ERR6052047 | MDR-TB | lineage2.2.1.1 | None | ERR9119929 | MDR-TB | lineage2.2.1.1 | None | SRR29056304 | Sensitive | lineage2.2.1.1 | None | ERR11082878 | Sensitive | lineage2.2.1.1 | None | ERR13286176 | MDR-TB | lineage2.2.1.1 | None | ERR10748481 | MDR-TB | lineage2.2.1.1 | None | ERR10748518 | MDR-TB | lineage2.2.1.1 | None | SRR16156805 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR11043937 | Sensitive | lineage2.2.1.1 | None | SRR29093447 | Sensitive | lineage2.2.1.1 | None | SRR29056060 | Sensitive | lineage2.2.1.1 | None | SRR16156676 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29096849 | Sensitive | lineage2.2.1.1 | None | SRR29056052 | Sensitive | lineage2.2.1.1 | None | SRR6896592 | Sensitive | lineage2.2.1.1 | None | SRR29093716 | Sensitive | lineage2.2.1.1 | None | ERR970442 | RR-TB | lineage2.2.1.1 | None | SRR29055812 | Sensitive | lineage2.2.1.1 | None | SRR10869040 | Sensitive | lineage2.2.1.1 | None | SRR29056113 | Sensitive | lineage2.2.1.1 | None | SRR29094017 | RR-TB | lineage2.2.1.1 | None | SRR29093472 | Other | lineage2.2.1.1 | None | SRR29096380 | Sensitive | lineage2.2.1.1 | None | SRR29093267 | Sensitive | lineage2.2.1.1 | None | SRR29093437 | Sensitive | lineage2.2.1.1 | None | ERR4011100 | Sensitive | lineage2.2.1.1 | None | SRR29093401 | Sensitive | lineage2.2.1.1 | None | SRR29056295 | Sensitive | lineage2.2.1.1 | None | ERR11049210 | Sensitive | lineage2.2.1.1 | None | SRR29093615 | Sensitive | lineage2.2.1.1 | None | ERR279600 | Sensitive | lineage2.2.1.1 | None | SRR29093348 | Sensitive | lineage2.2.1.1 | None | ERR7821140 | Sensitive | lineage2.2.1.1 | None | SRR29093997 | Sensitive | lineage2.2.1.1 | None | SRR29093694 | Sensitive | lineage2.2.1.1 | None | SRR29093742 | Sensitive | lineage2.2.1.1 | None | SRR29094034 | Sensitive | lineage2.2.1.1 | None | SRR29056104 | Sensitive | lineage2.2.1.1 | None | SRR29056032 | Sensitive | lineage2.2.1.1 | None | ERR4010966 | Sensitive | lineage2.2.1.1 | None | ERR4011106 | Sensitive | lineage2.2.1.1 | None | ERR983255 | RR-TB | lineage2.2.1.1 | None | SRR29093611 | MDR-TB | lineage2.2.1.1 | None | ERR4011111 | Sensitive | lineage2.2.1.1 | None | SRR29056273 | Sensitive | lineage2.2.1.1 | None | SRR10869057 | Sensitive | lineage2.2.1.1 | None | SRR29093402 | Sensitive | lineage2.2.1.1 | None | SRR29093356 | Sensitive | lineage2.2.1.1 | None | SRR29056091 | Sensitive | lineage2.2.1.1 | None | ERR279516 | MDR-TB | lineage2.2.1.1 | None | ERR6362376 | MDR-TB | lineage2.2.1.1 | None | SRR29093135 | Sensitive | lineage2.2.1.1 | None | SRR10869092 | Sensitive | lineage2.2.1.1 | None | ERR029203 | Sensitive | lineage2.2.1.1 | za | SRR29093565 | Other | lineage2.2.1.1 | None | SRR29093706 | Sensitive | lineage2.2.1.1 | None | ERR279643 | Sensitive | lineage2.2.1.1 | None | SRR6855726 | Sensitive | lineage2.2.1.1 | None | SRR29093741 | Sensitive | lineage2.2.1.1 | None | ERR495047 | MDR-TB | lineage2.2.1.1 | None | SRR10869309 | Sensitive | lineage2.2.1.1 | None | SRR10868988 | Sensitive | lineage2.2.1.1;lineage4.1.2.1 | None | ERR4808920 | MDR-TB | lineage2.2.1.1 | None | ERR495174 | Sensitive | lineage2.2.1.1 | None | ERR11049053 | Sensitive | lineage2.2.1.1 | None | SRR29093212 | Sensitive | lineage2.2.1.1 | None | ERR5987254 | MDR-TB | lineage2.2.1.1 | None | ERR019573 | Sensitive | lineage2.2.1.1 | None | ERR8686570 | Sensitive | lineage2.2.1.1 | None | SRR6981932 | Sensitive | lineage2.2.1.1 | None | ERR8699763 | Other | lineage2.2.1.1;lineage4 | None | ERR8699211 | Sensitive | lineage2.2.1.1 | None | ERR8699226 | Sensitive | lineage2.2.1.1 | None | ERR8699191 | Sensitive | lineage2.2.1.1;lineage4 | None | SRR10869295 | Sensitive | lineage2.2.1.1 | None | ERR4011053 | Sensitive | lineage2.2.1.1 | None | ERR8699785 | Sensitive | lineage2.2.1.1 | None | ERR8699834 | Sensitive | lineage2.2.1.1 | None | ERR8975951 | Sensitive | lineage2.2.1.1 | None | ERR8975035 | Sensitive | lineage2.2.1.1 | None | ERR8975673 | Pre-XDR-TB | lineage2.2.1.1;lineage2.2.2 | None | SRR10869073 | Sensitive | lineage2.2.1.1 | None | ERR8976109 | MDR-TB | lineage2.2.1.1 | None | ERR8975690 | MDR-TB | lineage2.2.1.1 | None | ERR8976065 | MDR-TB | lineage2.2.1.1 | None | ERR3340703 | Sensitive | lineage2.2.1.1 | za | ERR3340727 | Sensitive | lineage2.2.1.1 | za | SRR29055801 | Sensitive | lineage2.2.1.1 | None | SRR29094042 | Sensitive | lineage2.2.1.1 | None | SRR10869125 | Sensitive | lineage2.2.1.1 | None | ERR10748404 | MDR-TB | lineage2.2.1.1 | None | ERR11775650 | Sensitive | lineage2.2.1.1 | None | ERR11067258 | Sensitive | lineage2.2.1.1 | None | ERR11044439 | Sensitive | lineage2.2.1.1 | None | SRR10869145 | Sensitive | lineage2.2.1.1 | None | ERR4809068 | Sensitive | lineage2.2.1.1 | za | ERR8976093 | RR-TB | lineage2.2.1.1 | None | ERR10465949 | Sensitive | lineage2.2.1.1 | None | ERR1633823 | Sensitive | lineage2.2.1.1 | za | ERR1452617 | Sensitive | lineage2.2.1.1 | None | SRR29096392 | Sensitive | lineage2.2.1.1 | None | SRR29093586 | Sensitive | lineage2.2.1.1;lineage4.3.2.1 | None | SRR29096356 | MDR-TB | lineage2.2.1.1 | None | SRR6896443 | Sensitive | lineage2.2.1.1 | None | SRR29055820 | Sensitive | lineage2.2.1.1 | None | SRR10869115 | Sensitive | lineage2.2.1.1 | None | SRR29055572 | Sensitive | lineage2.2.1.1 | None | ERR9806630 | MDR-TB | lineage2.2.1.1 | None | SRR28351176 | RR-TB | lineage2.2.1.1 | None | SRR29055561 | Sensitive | lineage2.2.1.1 | None | ERR11081808 | Sensitive | lineage2.2.1.1 | None | ERR10748484 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR10869168 | Sensitive | lineage2.2.1.1 | None | SRR29055805 | Sensitive | lineage2.2.1.1 | None | SRR29055804 | Sensitive | lineage2.2.1.1 | None | SRR29056283 | Sensitive | lineage2.2.1.1 | None | SRR22251199 | Sensitive | lineage2.2.1.1 | None | SRR10869160 | Sensitive | lineage2.2.1.1 | None | SRR29055834 | Sensitive | lineage2.2.1.1 | None | SRR29055575 | Sensitive | lineage2.2.1.1 | None | SRR29056298 | Sensitive | lineage2.2.1.1 | None | SRR29094022 | Sensitive | lineage2.2.1.1;lineage4.1.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR29093432 | Sensitive | lineage2.2.1.1 | None | SRR29055576 | Sensitive | lineage2.2.1.1 | None | SRR10869228 | Sensitive | lineage2.2.1.1 | None | SRR28868709 | Sensitive | lineage2.2.1.1 | None | SRR29093405 | Sensitive | lineage2.2.1.1 | None | ERR1035035 | HR-TB | lineage2.2.1.1 | za | SRR29093525 | HR-TB | lineage2.2.1.1 | None | ERR108143 | Sensitive | lineage2.2.1.1 | za | ERR1750940 | Sensitive | lineage2.2.1.1 | za | ERR1750939 | Sensitive | lineage2.2.1.1 | za | SRR1180147 | Other | lineage2.2.1.1 | None | SRR29093177 | Sensitive | lineage2.2.1.1 | None | ERR7821127 | Sensitive | lineage2.2.1.1 | None | ERR10112900 | MDR-TB | lineage2.2.1.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR9119994 | MDR-TB | lineage2.2.1.1 | None | ERR1633948 | Sensitive | lineage2.2.1.1 | za | ERR1034955 | Sensitive | lineage2.2.1.1 | za | ERR1035055 | RR-TB | lineage2.2.1.1 | za | ERR4809297 | RR-TB | lineage2.2.1.1 | za | ERR4808879 | Sensitive | lineage2.2.1.1 | za | ERR4809014 | MDR-TB | lineage2.2.1.1 | za | ERR7911571 | MDR-TB | lineage2.2.1.1 | za | ERR8686179 | Sensitive | lineage2.2.1.1 | None | ERR8699751 | Sensitive | lineage2.2.1.1 | None | ERR10748289 | MDR-TB | lineage2.2.1.1 | None | ERR1633819 | MDR-TB | lineage2.2.1.1 | za | ERR8699198 | Sensitive | lineage2.2.1.1 | None | ERR8699215 | Sensitive | lineage2.2.1.1;lineage4 | None | ERR8699745 | Sensitive | lineage2.2.1.1 | None | ERR4896322 | Sensitive | lineage2.2.1.1;lineage4.1.2.1 | None | ERR8975766 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR8975822 | Sensitive | lineage2.2.1.1 | None | ERR8975851 | RR-TB | lineage2.2.1.1 | None | ERR8975985 | Sensitive | lineage2.2.1.1 | None | ERR8975964 | Sensitive | lineage2.2.1.1 | None | ERR5758405 | HR-TB | lineage2.2.1.1 | None | ERR7821206 | Sensitive | lineage2.2.1.1 | None | ERR551266 | Other | lineage2.2.1.1 | de | ERR2515201 | Sensitive | lineage2.2.1.1 | za | SRR29097002 | Sensitive | lineage2.2.1.1;lineage4.3.2.1 | None | ERR11466293 | Sensitive | lineage2.2.1.1;lineage4.1.1.3 | None | SRR29093823 | Sensitive | lineage2.2.1.1 | None |
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