TB-Profiler result

Run: SRR1181091

Summary

Run ID: SRR1181091

Sample name:

Date: 03-04-2023 04:26:56

Number of reads: 2728711

Percentage reads mapped: 61.86

Strain: lineage2.2.1.1

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.98
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.99
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.97
lineage2.2.1.1 East-Asian (Beijing) Beijing-RD150 RD105;RD207;RD181;RD150 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247448 p.His312Arg missense_variant 0.17 ethambutol
embB 4247580 p.Ala356Val missense_variant 0.21 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5284 c.45G>A synonymous_variant 0.22
gyrB 5287 c.48T>C synonymous_variant 0.22
gyrB 5293 c.54C>G synonymous_variant 0.18
gyrB 5305 c.66G>A synonymous_variant 0.15
gyrB 5308 c.69G>A synonymous_variant 0.16
gyrB 6127 c.888G>C synonymous_variant 0.18
gyrB 6145 c.906C>T synonymous_variant 0.22
gyrB 6250 c.1011A>G synonymous_variant 0.15
gyrB 6259 p.Asp340Glu missense_variant 0.16
gyrB 6286 c.1047T>C synonymous_variant 0.19
gyrA 6307 c.-995T>G upstream_gene_variant 0.22
gyrA 6331 c.-971A>G upstream_gene_variant 0.18
gyrA 6673 c.-629A>C upstream_gene_variant 0.15
gyrA 6700 c.-602T>C upstream_gene_variant 0.23
gyrA 6703 c.-599G>C upstream_gene_variant 0.23
gyrA 6706 c.-596G>A upstream_gene_variant 0.2
gyrA 6709 c.-593A>G upstream_gene_variant 0.24
gyrA 6721 c.-581C>T upstream_gene_variant 0.24
gyrA 6730 c.-572A>G upstream_gene_variant 0.25
gyrA 6745 c.-557T>C upstream_gene_variant 0.24
gyrA 6781 c.-521C>T upstream_gene_variant 0.16
gyrA 6841 c.-461T>C upstream_gene_variant 0.15
gyrA 6856 c.-446T>C upstream_gene_variant 0.2
gyrA 6862 c.-440C>G upstream_gene_variant 0.24
gyrA 6866 c.-436C>T upstream_gene_variant 0.23
gyrA 6872 c.-430T>C upstream_gene_variant 0.26
gyrA 6878 c.-424T>C upstream_gene_variant 0.2
gyrA 6904 c.-398C>G upstream_gene_variant 0.16
gyrA 6931 c.-371A>G upstream_gene_variant 0.16
gyrA 6934 c.-368A>G upstream_gene_variant 0.18
gyrA 6949 c.-353A>G upstream_gene_variant 0.15
gyrA 6952 c.-350C>G upstream_gene_variant 0.16
gyrA 7108 c.-194G>A upstream_gene_variant 0.16
gyrA 7165 c.-137C>A upstream_gene_variant 0.17
gyrA 7178 c.-124T>C upstream_gene_variant 0.23
gyrA 7213 c.-89G>A upstream_gene_variant 0.17
gyrA 7216 c.-86G>C upstream_gene_variant 0.18
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7595 c.294C>G synonymous_variant 0.17
gyrA 7601 c.300C>G synonymous_variant 0.19
gyrA 7625 c.324G>C synonymous_variant 0.16
gyrA 7784 c.483A>G synonymous_variant 0.23
gyrA 7793 c.492G>T synonymous_variant 0.19
gyrA 7799 c.498A>G synonymous_variant 0.28
gyrA 7832 c.531G>C synonymous_variant 0.2
gyrA 7835 c.534A>C synonymous_variant 0.26
gyrA 7838 c.537C>T synonymous_variant 0.25
gyrA 7841 c.540C>T synonymous_variant 0.16
gyrA 7859 c.558A>G synonymous_variant 0.15
gyrA 8090 c.789C>G synonymous_variant 0.16
gyrA 8121 c.820T>C synonymous_variant 0.22
gyrA 8156 c.855T>C synonymous_variant 0.22
gyrA 8168 c.867A>G synonymous_variant 0.16
gyrA 8283 p.Ile328Leu missense_variant 0.16
gyrA 8288 c.987T>C synonymous_variant 0.18
gyrA 8294 c.993T>C synonymous_variant 0.19
gyrA 8321 c.1020C>T synonymous_variant 0.18
gyrA 8324 c.1023T>C synonymous_variant 0.26
gyrA 8330 c.1029C>G synonymous_variant 0.18
gyrA 8337 c.1036_1038delCTAinsTTG synonymous_variant 0.17
gyrA 8340 p.Ala347Ser missense_variant 0.27
gyrA 8375 c.1074G>C synonymous_variant 0.19
gyrA 8382 p.Leu361Met missense_variant 0.16
gyrA 8546 c.1245T>C synonymous_variant 0.21
gyrA 8552 c.1251C>G synonymous_variant 0.18
gyrA 8561 c.1260A>C synonymous_variant 0.2
gyrA 8576 c.1275C>G synonymous_variant 0.21
gyrA 8603 c.1302A>G synonymous_variant 0.27
gyrA 8609 c.1308G>C synonymous_variant 0.28
gyrA 8619 c.1318T>C synonymous_variant 0.28
gyrA 8636 c.1335A>C synonymous_variant 0.18
gyrA 8642 c.1341A>G synonymous_variant 0.17
gyrA 8645 c.1344C>T synonymous_variant 0.24
gyrA 8655 p.Ile452Val missense_variant 0.26
gyrA 8664 c.1363C>T synonymous_variant 0.22
gyrA 8672 c.1371A>G synonymous_variant 0.23
gyrA 8693 c.1392T>C synonymous_variant 0.27
gyrA 8699 c.1398A>G synonymous_variant 0.2
gyrA 8711 c.1410A>C synonymous_variant 0.23
gyrA 8714 c.1413A>G synonymous_variant 0.16
gyrA 8717 c.1416C>G synonymous_variant 0.16
gyrA 8723 c.1422G>C synonymous_variant 0.15
gyrA 8729 c.1428T>C synonymous_variant 0.19
gyrA 8756 c.1455A>G synonymous_variant 0.16
gyrA 8786 c.1485T>C synonymous_variant 0.16
gyrA 8796 p.Ile499Val missense_variant 0.16
gyrA 8810 c.1509A>C synonymous_variant 0.21
gyrA 8818 p.Ser506Asn missense_variant 0.21
gyrA 8828 c.1527T>C synonymous_variant 0.26
gyrA 8829 c.1528T>C synonymous_variant 0.26
gyrA 8852 c.1551T>C synonymous_variant 0.25
gyrA 8855 c.1554C>G synonymous_variant 0.24
gyrA 8858 c.1557T>C synonymous_variant 0.29
gyrA 8867 c.1566A>G synonymous_variant 0.21
gyrA 8870 c.1569G>C synonymous_variant 0.24
gyrA 8873 c.1572A>C synonymous_variant 0.24
gyrA 8876 c.1575C>T synonymous_variant 0.26
gyrA 8897 c.1596T>C synonymous_variant 0.25
gyrA 8903 c.1602T>C synonymous_variant 0.23
gyrA 8915 c.1614A>G synonymous_variant 0.19
gyrA 8933 c.1632G>A synonymous_variant 0.16
gyrA 8957 c.1656C>T synonymous_variant 0.15
gyrA 8987 c.1686C>G synonymous_variant 0.17
gyrA 8998 p.Leu566Trp missense_variant 0.18
gyrA 9017 c.1716C>A synonymous_variant 0.16
gyrA 9029 c.1728T>G synonymous_variant 0.16
gyrA 9230 c.1929T>C synonymous_variant 0.17
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 490803 c.21T>A synonymous_variant 0.15
fgd1 490818 c.36C>T synonymous_variant 0.18
fgd1 490830 c.48A>C synonymous_variant 0.22
fgd1 490896 c.114C>T synonymous_variant 0.18
fgd1 491064 c.282A>C synonymous_variant 0.23
fgd1 491091 c.309T>C synonymous_variant 0.18
fgd1 491097 c.315G>C synonymous_variant 0.17
fgd1 491106 c.324T>C synonymous_variant 0.23
fgd1 491121 c.339A>G synonymous_variant 0.2
fgd1 491601 c.819T>C synonymous_variant 0.17
fgd1 491610 c.828A>G synonymous_variant 0.17
fgd1 491616 c.834A>G synonymous_variant 0.16
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575512 c.165A>G synonymous_variant 0.18
mshA 575515 c.168G>C synonymous_variant 0.18
mshA 575521 c.174A>T synonymous_variant 0.18
mshA 575524 c.177G>A synonymous_variant 0.21
mshA 575530 c.183C>T synonymous_variant 0.24
mshA 575539 c.192C>T synonymous_variant 0.28
mshA 575548 c.201C>G synonymous_variant 0.3
mshA 575557 c.210C>G synonymous_variant 0.28
mshA 575561 p.Met72Val missense_variant 0.33
mshA 575576 c.229C>T synonymous_variant 0.29
mshA 575581 c.234C>T synonymous_variant 0.28
mshA 575590 c.243T>G synonymous_variant 0.35
mshA 575635 c.288A>G synonymous_variant 0.2
mshA 575652 p.Arg102Gln missense_variant 0.21
mshA 575659 c.312A>G synonymous_variant 0.19
mshA 575665 c.318G>C synonymous_variant 0.19
mshA 575713 c.366G>A synonymous_variant 0.16
mshA 575734 c.387T>G synonymous_variant 0.2
mshA 575746 c.399C>G synonymous_variant 0.23
mshA 575772 p.Val142Ala missense_variant 0.21
mshA 575785 c.438T>C synonymous_variant 0.24
mshA 575821 c.474G>C synonymous_variant 0.28
mshA 575824 c.477T>A synonymous_variant 0.24
mshA 575851 c.504C>T synonymous_variant 0.2
mshA 575860 c.513G>A synonymous_variant 0.2
mshA 575864 c.517T>C synonymous_variant 0.2
mshA 575878 c.531A>G synonymous_variant 0.22
mshA 575884 c.537G>C synonymous_variant 0.24
mshA 575893 c.546C>G synonymous_variant 0.18
mshA 575907 p.Ala187Val missense_variant 0.84
ccsA 619956 c.66G>A synonymous_variant 0.15
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 760101 c.295T>C synonymous_variant 0.26
rpoB 760112 c.306T>C synonymous_variant 0.28
rpoB 760115 c.309C>T synonymous_variant 0.17
rpoB 760118 c.312T>G synonymous_variant 0.19
rpoB 760121 c.315T>C synonymous_variant 0.32
rpoB 760130 p.Asp108Glu missense_variant 0.27
rpoB 760139 c.333A>G synonymous_variant 0.22
rpoB 760145 c.339C>G synonymous_variant 0.19
rpoB 760184 c.378A>G synonymous_variant 0.37
rpoB 760196 c.390C>G synonymous_variant 0.32
rpoB 760223 c.417T>C synonymous_variant 0.16
rpoB 760235 c.429T>C synonymous_variant 0.34
rpoB 760244 c.438G>C synonymous_variant 0.18
rpoB 760256 c.450C>T synonymous_variant 0.19
rpoB 760274 c.468G>A synonymous_variant 0.17
rpoB 760307 c.501T>C synonymous_variant 0.28
rpoB 760310 c.504G>C synonymous_variant 0.19
rpoB 760328 c.522G>C synonymous_variant 0.27
rpoB 760340 c.534G>T synonymous_variant 0.24
rpoB 760356 p.Thr184Ser missense_variant 0.18
rpoB 760361 c.555T>C synonymous_variant 0.23
rpoB 760370 c.564C>G synonymous_variant 0.19
rpoB 760376 p.Asp190Glu missense_variant 0.19
rpoB 760380 p.Thr192Leu missense_variant 0.19
rpoB 760403 c.597C>T synonymous_variant 0.2
rpoB 760415 c.609C>T synonymous_variant 0.18
rpoB 760424 c.618C>G synonymous_variant 0.24
rpoB 760430 c.624T>C synonymous_variant 0.25
rpoB 760475 c.669A>G synonymous_variant 0.29
rpoB 760478 c.672C>T synonymous_variant 0.25
rpoB 760481 c.675G>T synonymous_variant 0.24
rpoB 760484 c.678A>G synonymous_variant 0.29
rpoB 760522 p.Ser239Asn missense_variant 0.27
rpoB 760533 p.Val243His missense_variant 0.21
rpoB 760547 c.741G>C synonymous_variant 0.23
rpoB 760556 c.750G>A synonymous_variant 0.22
rpoB 760563 p.Arg253Met missense_variant 0.25
rpoB 760591 p.Val262Ala missense_variant 0.28
rpoB 760598 c.792C>T synonymous_variant 0.22
rpoB 760611 c.805T>C synonymous_variant 0.28
rpoB 760646 c.840C>G synonymous_variant 0.26
rpoB 760655 c.849A>G synonymous_variant 0.25
rpoB 760661 c.855A>C synonymous_variant 0.24
rpoB 760670 c.864G>C synonymous_variant 0.23
rpoB 760674 c.868T>C synonymous_variant 0.21
rpoB 760679 c.873A>G synonymous_variant 0.2
rpoB 760683 c.877T>C synonymous_variant 0.19
rpoB 760817 c.1011A>G synonymous_variant 0.18
rpoB 760820 c.1014T>C synonymous_variant 0.19
rpoB 760826 c.1020C>G synonymous_variant 0.19
rpoB 760830 c.1024T>C synonymous_variant 0.22
rpoB 760841 c.1035T>C synonymous_variant 0.23
rpoB 760845 p.Thr347Ser missense_variant 0.21
rpoB 760850 c.1044G>C synonymous_variant 0.19
rpoB 760856 c.1050C>G synonymous_variant 0.18
rpoB 760862 c.1056G>C synonymous_variant 0.17
rpoB 760869 p.Val355Thr missense_variant 0.22
rpoB 760877 c.1071G>T synonymous_variant 0.3
rpoB 760886 c.1080A>G synonymous_variant 0.33
rpoB 760916 c.1110C>T synonymous_variant 0.22
rpoB 760919 c.1113C>T synonymous_variant 0.24
rpoB 760925 c.1119T>C synonymous_variant 0.2
rpoB 760928 c.1122G>C synonymous_variant 0.26
rpoB 760931 c.1125C>G synonymous_variant 0.17
rpoB 760946 c.1140A>G synonymous_variant 0.28
rpoB 760964 c.1158C>T synonymous_variant 0.23
rpoB 760970 c.1164G>C synonymous_variant 0.21
rpoB 760991 c.1185G>C synonymous_variant 0.15
rpoB 760994 c.1188G>A synonymous_variant 0.15
rpoB 761006 c.1200C>G synonymous_variant 0.19
rpoB 761015 c.1209G>C synonymous_variant 0.33
rpoB 761021 c.1215G>C synonymous_variant 0.2
rpoB 761027 c.1221A>G synonymous_variant 0.33
rpoB 761036 c.1230G>C synonymous_variant 0.22
rpoB 761037 c.1231T>C synonymous_variant 0.32
rpoB 761057 c.1251G>C synonymous_variant 0.2
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.18
rpoB 761102 c.1296A>G synonymous_variant 0.19
rpoB 761204 c.1398C>T synonymous_variant 0.19
rpoB 761207 c.1401C>T synonymous_variant 0.25
rpoB 761240 c.1434C>T synonymous_variant 0.24
rpoB 761249 c.1443A>G synonymous_variant 0.4
rpoB 761255 c.1449T>G synonymous_variant 0.43
rpoB 761264 c.1458C>G synonymous_variant 0.35
rpoB 761282 c.1476C>G synonymous_variant 0.34
rpoB 761327 c.1521A>G synonymous_variant 0.34
rpoB 761354 c.1548C>T synonymous_variant 0.26
rpoB 761360 c.1554T>C synonymous_variant 0.22
rpoB 761367 p.Glu521Gln missense_variant 0.21
rpoB 761374 p.Val523Asp missense_variant 0.21
rpoB 761408 c.1602G>C synonymous_variant 0.21
rpoB 761435 c.1629T>C synonymous_variant 0.19
rpoB 761444 c.1638T>C synonymous_variant 0.21
rpoB 761483 c.1677G>C synonymous_variant 0.19
rpoB 761492 c.1686G>C synonymous_variant 0.22
rpoB 761504 c.1698C>G synonymous_variant 0.15
rpoB 761510 c.1704T>C synonymous_variant 0.21
rpoB 761516 c.1710G>C synonymous_variant 0.2
rpoB 761531 c.1725C>G synonymous_variant 0.25
rpoB 761537 c.1731C>G synonymous_variant 0.31
rpoB 761540 c.1734C>T synonymous_variant 0.24
rpoB 761561 c.1755C>G synonymous_variant 0.39
rpoB 761564 c.1758G>C synonymous_variant 0.41
rpoB 761573 c.1767C>G synonymous_variant 0.42
rpoB 761579 c.1773G>C synonymous_variant 0.44
rpoB 761582 c.1776G>A synonymous_variant 0.35
rpoB 761606 c.1800C>G synonymous_variant 0.44
rpoB 761612 c.1806G>T synonymous_variant 0.45
rpoB 761615 c.1809A>C synonymous_variant 0.47
rpoB 761636 c.1830G>T synonymous_variant 0.45
rpoB 761645 c.1839C>G synonymous_variant 0.41
rpoB 761648 c.1842T>C synonymous_variant 0.41
rpoB 761657 c.1851C>G synonymous_variant 0.36
rpoB 761666 c.1860G>C synonymous_variant 0.25
rpoB 761669 c.1863C>T synonymous_variant 0.24
rpoB 761675 c.1869G>T synonymous_variant 0.25
rpoB 761690 c.1884G>C synonymous_variant 0.24
rpoB 761735 c.1929C>G synonymous_variant 0.15
rpoB 761750 c.1944G>C synonymous_variant 0.18
rpoB 761765 c.1959T>C synonymous_variant 0.18
rpoB 761772 p.His656Ala missense_variant 0.16
rpoB 761778 p.Asn658Asp missense_variant 0.16
rpoB 761813 c.2007T>C synonymous_variant 0.19
rpoB 761834 c.2028T>C synonymous_variant 0.21
rpoB 761848 p.Cys681Ser missense_variant 0.18
rpoB 761852 c.2046C>G synonymous_variant 0.17
rpoB 761858 c.2052G>C synonymous_variant 0.16
rpoB 761864 c.2058G>C synonymous_variant 0.19
rpoB 761867 c.2061C>A synonymous_variant 0.21
rpoB 761873 c.2067A>C synonymous_variant 0.22
rpoB 761885 c.2079T>C synonymous_variant 0.3
rpoB 761906 c.2100C>G synonymous_variant 0.27
rpoB 761909 c.2103T>C synonymous_variant 0.2
rpoB 761912 c.2106T>C synonymous_variant 0.25
rpoB 761915 p.Asp703Glu missense_variant 0.26
rpoB 761916 p.Asp704Asn missense_variant 0.25
rpoB 761921 c.2115C>T synonymous_variant 0.21
rpoB 761933 c.2127G>C synonymous_variant 0.21
rpoB 761954 c.2148C>G synonymous_variant 0.27
rpoB 761955 p.Ile717Val missense_variant 0.18
rpoB 761969 c.2163G>A synonymous_variant 0.18
rpoB 761999 c.2193G>C synonymous_variant 0.2
rpoB 762014 c.2208C>T synonymous_variant 0.22
rpoB 762017 c.2211A>G synonymous_variant 0.26
rpoB 762050 c.2244G>A synonymous_variant 0.24
rpoB 762053 c.2247T>C synonymous_variant 0.26
rpoB 762065 c.2259T>C synonymous_variant 0.28
rpoB 762083 c.2277T>C synonymous_variant 0.31
rpoB 762086 c.2280G>C synonymous_variant 0.34
rpoB 762101 c.2295C>G synonymous_variant 0.27
rpoB 762114 p.Ile770Val missense_variant 0.35
rpoB 762138 c.2332C>T synonymous_variant 0.21
rpoB 762143 c.2337T>C synonymous_variant 0.23
rpoB 762149 c.2343G>C synonymous_variant 0.2
rpoB 762167 c.2361T>C synonymous_variant 0.17
rpoB 762179 c.2373C>T synonymous_variant 0.18
rpoB 762185 c.2379G>C synonymous_variant 0.33
rpoB 762239 c.2433G>A synonymous_variant 0.26
rpoB 762254 c.2448T>G synonymous_variant 0.34
rpoB 762257 c.2451C>G synonymous_variant 0.34
rpoB 762284 c.2478G>C synonymous_variant 0.32
rpoB 762293 c.2487T>C synonymous_variant 0.31
rpoB 762314 c.2508C>T synonymous_variant 0.22
rpoB 762317 c.2511A>G synonymous_variant 0.27
rpoB 762347 c.2541T>C synonymous_variant 0.25
rpoB 762350 c.2544C>G synonymous_variant 0.2
rpoB 762362 p.Glu852Asp missense_variant 0.22
rpoB 762369 c.2563T>C synonymous_variant 0.22
rpoC 762374 c.-996G>C upstream_gene_variant 0.26
rpoC 762395 c.-975G>C upstream_gene_variant 0.22
rpoC 762398 c.-972T>C upstream_gene_variant 0.21
rpoC 762404 c.-966T>C upstream_gene_variant 0.21
rpoC 762410 c.-960T>C upstream_gene_variant 0.25
rpoC 762416 c.-954A>G upstream_gene_variant 0.27
rpoC 762443 c.-927G>C upstream_gene_variant 0.17
rpoC 762449 c.-921C>A upstream_gene_variant 0.18
rpoC 762452 c.-918G>C upstream_gene_variant 0.19
rpoC 762470 c.-900G>C upstream_gene_variant 0.27
rpoC 762491 c.-879T>C upstream_gene_variant 0.22
rpoB 762507 p.Leu901Met missense_variant 0.2
rpoB 762510 p.Ala902Pro missense_variant 0.21
rpoC 762524 c.-846G>C upstream_gene_variant 0.17
rpoC 762533 c.-837T>C upstream_gene_variant 0.2
rpoC 762536 c.-834T>C upstream_gene_variant 0.19
rpoC 762537 c.-833T>C upstream_gene_variant 0.19
rpoC 762551 c.-819C>T upstream_gene_variant 0.17
rpoC 762833 c.-537C>T upstream_gene_variant 0.2
rpoC 762857 c.-513C>G upstream_gene_variant 0.34
rpoC 762860 c.-510G>C upstream_gene_variant 0.23
rpoC 762863 c.-507T>C upstream_gene_variant 0.21
rpoC 762920 c.-450C>G upstream_gene_variant 0.27
rpoC 762929 c.-441G>T upstream_gene_variant 0.31
rpoC 762962 c.-408C>T upstream_gene_variant 0.24
rpoC 762983 c.-387C>A upstream_gene_variant 0.22
rpoC 762989 c.-381G>A upstream_gene_variant 0.17
rpoC 762995 c.-375G>T upstream_gene_variant 0.18
rpoC 763028 c.-342T>C upstream_gene_variant 0.23
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.24
rpoC 763040 c.-330C>G upstream_gene_variant 0.27
rpoC 763070 c.-300T>C upstream_gene_variant 0.28
rpoC 763082 c.-288C>G upstream_gene_variant 0.22
rpoC 763085 c.-285C>G upstream_gene_variant 0.32
rpoC 763103 c.-267G>A upstream_gene_variant 0.26
rpoC 763115 c.-255T>C upstream_gene_variant 0.29
rpoC 763127 c.-243G>C upstream_gene_variant 0.28
rpoC 763133 c.-237G>C upstream_gene_variant 0.18
rpoC 763136 c.-234C>T upstream_gene_variant 0.2
rpoC 763158 c.-212C>T upstream_gene_variant 0.21
rpoC 763166 c.-204A>G upstream_gene_variant 0.21
rpoC 763169 c.-201A>G upstream_gene_variant 0.27
rpoC 763202 c.-168A>G upstream_gene_variant 0.18
rpoC 763206 c.-164_-163delAGinsTC upstream_gene_variant 0.18
rpoC 763402 c.33C>T synonymous_variant 0.2
rpoC 763408 c.39T>C synonymous_variant 0.31
rpoC 763411 c.42T>G synonymous_variant 0.31
rpoC 763414 c.45T>C synonymous_variant 0.31
rpoC 763423 c.54G>A synonymous_variant 0.24
rpoC 763441 c.72C>T synonymous_variant 0.25
rpoC 763444 c.75T>C synonymous_variant 0.32
rpoC 763456 c.87A>G synonymous_variant 0.38
rpoC 763486 c.117T>C synonymous_variant 0.4
rpoC 763492 c.123G>C synonymous_variant 0.34
rpoC 763528 c.159G>A synonymous_variant 0.34
rpoC 763546 c.177A>G synonymous_variant 0.34
rpoC 763570 c.201G>A synonymous_variant 0.27
rpoC 763573 c.204G>T synonymous_variant 0.24
rpoC 763594 c.225C>T synonymous_variant 0.25
rpoC 763615 c.246G>A synonymous_variant 0.22
rpoC 763618 c.249C>T synonymous_variant 0.23
rpoC 763621 c.252C>G synonymous_variant 0.22
rpoC 763636 c.267T>G synonymous_variant 0.26
rpoC 763660 c.291T>G synonymous_variant 0.28
rpoC 763669 c.300C>G synonymous_variant 0.22
rpoC 763675 c.306C>G synonymous_variant 0.25
rpoC 763681 c.312C>A synonymous_variant 0.25
rpoC 763702 c.333C>G synonymous_variant 0.35
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.26
rpoC 763714 c.345G>C synonymous_variant 0.39
rpoC 763723 c.354G>C synonymous_variant 0.3
rpoC 763732 c.363C>G synonymous_variant 0.41
rpoC 763741 c.372C>T synonymous_variant 0.27
rpoC 763744 c.375G>C synonymous_variant 0.39
rpoC 763765 c.396T>C synonymous_variant 0.41
rpoC 763768 c.399C>T synonymous_variant 0.28
rpoC 763781 p.Ser138Ala missense_variant 0.35
rpoC 763792 p.Glu141Asp missense_variant 0.23
rpoC 763807 c.438T>C synonymous_variant 0.25
rpoC 763816 c.447C>G synonymous_variant 0.21
rpoC 763836 p.Ala156Val missense_variant 0.21
rpoC 763855 c.486C>T synonymous_variant 0.21
rpoC 763858 c.489A>G synonymous_variant 0.2
rpoC 763872 p.Gly168Ala missense_variant 0.2
rpoC 763876 p.Glu169Asp missense_variant 0.21
rpoC 763879 c.510A>G synonymous_variant 0.23
rpoC 763888 c.519G>T synonymous_variant 0.24
rpoC 763894 c.525A>G synonymous_variant 0.27
rpoC 763924 c.555G>A synonymous_variant 0.38
rpoC 763936 c.567C>G synonymous_variant 0.42
rpoC 763939 c.570G>A synonymous_variant 0.4
rpoC 763969 c.600C>T synonymous_variant 0.4
rpoC 763978 c.609C>T synonymous_variant 0.36
rpoC 763991 p.Ile208Leu missense_variant 0.51
rpoC 763996 c.627T>C synonymous_variant 0.47
rpoC 764002 c.633C>G synonymous_variant 0.37
rpoC 764005 c.636G>C synonymous_variant 0.46
rpoC 764024 c.655T>C synonymous_variant 0.4
rpoC 764040 p.Ser224Thr missense_variant 0.3
rpoC 764044 c.675T>G synonymous_variant 0.29
rpoC 764056 c.687G>T synonymous_variant 0.28
rpoC 764059 c.690G>T synonymous_variant 0.37
rpoC 764080 c.711C>T synonymous_variant 0.33
rpoC 764083 c.714A>G synonymous_variant 0.44
rpoC 764098 c.729A>G synonymous_variant 0.38
rpoC 764131 c.762T>G synonymous_variant 0.33
rpoC 764203 c.834G>C synonymous_variant 0.19
rpoC 764206 p.Asp279Glu missense_variant 0.22
rpoC 764217 p.Asn283Ser missense_variant 0.17
rpoC 764242 c.873C>T synonymous_variant 0.18
rpoC 764245 c.876C>G synonymous_variant 0.19
rpoC 764248 c.879C>G synonymous_variant 0.2
rpoC 764254 c.885G>A synonymous_variant 0.3
rpoC 764260 c.891G>A synonymous_variant 0.26
rpoC 764263 c.894G>C synonymous_variant 0.27
rpoC 764266 c.897T>C synonymous_variant 0.17
rpoC 764269 c.900G>C synonymous_variant 0.17
rpoC 764272 c.903G>T synonymous_variant 0.16
rpoC 764278 c.909A>G synonymous_variant 0.43
rpoC 764284 c.915G>C synonymous_variant 0.17
rpoC 764317 c.948C>G synonymous_variant 0.4
rpoC 764320 c.951C>T synonymous_variant 0.33
rpoC 764339 c.970C>T synonymous_variant 0.32
rpoC 764353 c.984G>T synonymous_variant 0.32
rpoC 764365 c.996C>T synonymous_variant 0.39
rpoC 764387 c.1018T>C synonymous_variant 0.39
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.38
rpoC 764428 c.1059G>T synonymous_variant 0.29
rpoC 764431 c.1062G>C synonymous_variant 0.34
rpoC 764434 c.1065A>G synonymous_variant 0.33
rpoC 764446 c.1077T>C synonymous_variant 0.27
rpoC 764449 c.1080G>C synonymous_variant 0.27
rpoC 764452 c.1083T>G synonymous_variant 0.24
rpoC 764455 c.1086G>T synonymous_variant 0.19
rpoC 764458 c.1089G>C synonymous_variant 0.32
rpoC 764461 c.1092A>G synonymous_variant 0.36
rpoC 764497 c.1128A>G synonymous_variant 0.39
rpoC 764500 c.1131C>G synonymous_variant 0.37
rpoC 764521 c.1152T>C synonymous_variant 0.34
rpoC 764536 c.1167G>C synonymous_variant 0.23
rpoC 764539 c.1170C>G synonymous_variant 0.35
rpoC 764548 c.1179G>A synonymous_variant 0.26
rpoC 764554 c.1185C>T synonymous_variant 0.25
rpoC 764575 c.1206T>G synonymous_variant 0.27
rpoC 764578 c.1209C>G synonymous_variant 0.23
rpoC 764611 c.1242G>T synonymous_variant 0.28
rpoC 764626 c.1257C>T synonymous_variant 0.29
rpoC 764650 c.1281G>T synonymous_variant 0.32
rpoC 764668 c.1299C>T synonymous_variant 0.39
rpoC 764752 c.1383G>C synonymous_variant 0.35
rpoC 764764 c.1395T>C synonymous_variant 0.37
rpoC 764782 c.1413C>T synonymous_variant 0.26
rpoC 764797 c.1428G>C synonymous_variant 0.24
rpoC 764809 c.1440C>T synonymous_variant 0.31
rpoC 764815 c.1446A>G synonymous_variant 0.24
rpoC 764833 c.1464A>G synonymous_variant 0.17
rpoC 764923 c.1554A>G synonymous_variant 0.16
rpoC 764948 c.1579T>C synonymous_variant 0.19
rpoC 764968 c.1599T>C synonymous_variant 0.16
rpoC 765404 c.2035C>T synonymous_variant 0.21
rpoC 765409 c.2040T>C synonymous_variant 0.23
rpoC 765412 c.2043T>C synonymous_variant 0.2
rpoC 765421 c.2052C>G synonymous_variant 0.23
rpoC 765451 c.2082C>T synonymous_variant 0.26
rpoC 765478 c.2109T>C synonymous_variant 0.36
rpoC 765499 c.2130C>A synonymous_variant 0.36
rpoC 765529 c.2160C>T synonymous_variant 0.28
rpoC 765541 c.2172C>G synonymous_variant 0.32
rpoC 765547 c.2178C>A synonymous_variant 0.33
rpoC 765556 c.2187G>C synonymous_variant 0.3
rpoC 765562 c.2193G>C synonymous_variant 0.31
rpoC 765578 c.2209C>T synonymous_variant 0.27
rpoC 765583 c.2214G>T synonymous_variant 0.3
rpoC 765592 c.2223C>T synonymous_variant 0.23
rpoC 765622 p.Glu751Asp missense_variant 0.21
rpoC 765625 c.2256C>G synonymous_variant 0.2
rpoC 765628 c.2259G>C synonymous_variant 0.26
rpoC 765658 c.2289C>T synonymous_variant 0.26
rpoC 765685 c.2316G>A synonymous_variant 0.28
rpoC 765700 c.2331T>C synonymous_variant 0.34
rpoC 765728 p.Gln787Lys missense_variant 0.27
rpoC 765734 c.2365T>C synonymous_variant 0.31
rpoC 765739 c.2370G>T synonymous_variant 0.24
rpoC 765751 c.2382C>G synonymous_variant 0.23
rpoC 765753 p.Asp795Ala missense_variant 0.23
rpoC 765772 c.2403C>G synonymous_variant 0.23
rpoC 765784 c.2415C>G synonymous_variant 0.27
rpoC 765787 c.2418C>T synonymous_variant 0.25
rpoC 765793 c.2424C>G synonymous_variant 0.25
rpoC 765796 c.2427C>T synonymous_variant 0.26
rpoC 765811 c.2442T>C synonymous_variant 0.26
rpoC 765826 c.2457T>C synonymous_variant 0.25
rpoC 765835 c.2466C>T synonymous_variant 0.26
rpoC 765883 c.2514C>G synonymous_variant 0.32
rpoC 765886 c.2517C>G synonymous_variant 0.32
rpoC 765892 c.2523T>C synonymous_variant 0.34
rpoC 765907 c.2538G>A synonymous_variant 0.29
rpoC 765928 c.2559C>G synonymous_variant 0.26
rpoC 765952 c.2583G>C synonymous_variant 0.33
rpoC 765967 c.2598C>T synonymous_variant 0.29
rpoC 765973 c.2604C>G synonymous_variant 0.17
rpoC 765979 c.2610C>G synonymous_variant 0.24
rpoC 765991 c.2622C>T synonymous_variant 0.16
rpoC 765994 c.2625A>T synonymous_variant 0.27
rpoC 766021 c.2652G>C synonymous_variant 0.23
rpoC 766027 c.2658G>C synonymous_variant 0.15
rpoC 766043 p.Gln892Glu missense_variant 0.28
rpoC 766061 p.Val898Ile missense_variant 0.24
rpoC 766082 p.Ala905Gln missense_variant 0.3
rpoC 766096 c.2727G>T synonymous_variant 0.3
rpoC 766105 c.2736C>T synonymous_variant 0.31
rpoC 766129 c.2760C>G synonymous_variant 0.26
rpoC 766135 c.2766G>A synonymous_variant 0.23
rpoC 766141 c.2772C>T synonymous_variant 0.19
rpoC 766142 c.2773C>T synonymous_variant 0.17
rpoC 766148 p.Thr927Ala missense_variant 0.17
rpoC 766369 c.3000C>G synonymous_variant 0.15
rpoC 766381 c.3012C>T synonymous_variant 0.27
rpoC 766384 c.3015A>G synonymous_variant 0.26
rpoC 766390 c.3021C>T synonymous_variant 0.18
rpoC 766402 c.3033C>G synonymous_variant 0.2
rpoC 766408 c.3039C>T synonymous_variant 0.29
rpoC 766426 c.3057C>T synonymous_variant 0.29
rpoC 766456 c.3087C>G synonymous_variant 0.24
rpoC 766486 c.3117A>G synonymous_variant 0.32
rpoC 766492 c.3123T>A synonymous_variant 0.28
rpoC 766522 c.3153C>G synonymous_variant 0.3
rpoC 766530 p.Arg1054Gln missense_variant 0.32
rpoC 766540 c.3171C>T synonymous_variant 0.32
rpoC 766543 c.3174C>T synonymous_variant 0.35
rpoC 766549 c.3180G>C synonymous_variant 0.33
rpoC 766570 c.3201T>C synonymous_variant 0.3
rpoC 766573 c.3204T>C synonymous_variant 0.36
rpoC 766579 c.3210C>T synonymous_variant 0.28
rpoC 766585 c.3216T>C synonymous_variant 0.35
rpoC 766594 c.3225G>C synonymous_variant 0.36
rpoC 766607 p.Ile1080Leu missense_variant 0.45
rpoC 766657 c.3288A>G synonymous_variant 0.35
rpoC 766660 c.3291G>A synonymous_variant 0.24
rpoC 766666 c.3297C>T synonymous_variant 0.25
rpoC 766672 c.3303T>C synonymous_variant 0.34
rpoC 766726 c.3357T>C synonymous_variant 0.34
rpoC 766738 c.3369G>C synonymous_variant 0.33
rpoC 766765 c.3396A>C synonymous_variant 0.36
rpoC 766769 c.3400C>T synonymous_variant 0.27
rpoC 766774 c.3405T>C synonymous_variant 0.35
rpoC 766801 c.3432C>A synonymous_variant 0.25
rpoC 766804 c.3435A>G synonymous_variant 0.29
rpoC 766864 c.3495G>C synonymous_variant 0.23
rpoC 766894 c.3525T>C synonymous_variant 0.21
rpoC 766895 c.3526T>C synonymous_variant 0.21
rpoC 766903 c.3534C>T synonymous_variant 0.21
rpoC 766918 c.3549C>T synonymous_variant 0.18
rpoC 766933 c.3564A>G synonymous_variant 0.18
rpoC 766963 c.3594T>C synonymous_variant 0.15
rpoC 766972 c.3603G>C synonymous_variant 0.19
rpoC 766978 c.3609C>T synonymous_variant 0.17
rpoC 766996 c.3627C>T synonymous_variant 0.23
rpoC 767002 c.3633G>C synonymous_variant 0.24
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.38
rpoC 767044 c.3675G>A synonymous_variant 0.33
rpoC 767059 c.3690T>G synonymous_variant 0.41
rpoC 767062 c.3693C>A synonymous_variant 0.42
rpoC 767098 c.3729T>C synonymous_variant 0.44
rpoC 767119 c.3750A>G synonymous_variant 0.39
rpoC 767134 c.3765C>A synonymous_variant 0.34
rpoC 767152 c.3783T>G synonymous_variant 0.31
rpoC 767158 c.3789T>A synonymous_variant 0.33
rpoC 767167 c.3798C>G synonymous_variant 0.32
rpoC 767180 p.Ala1271Gln missense_variant 0.33
rpoC 767185 c.3816G>T synonymous_variant 0.33
rpoC 767191 c.3822C>G synonymous_variant 0.37
rpoC 767200 c.3831G>A synonymous_variant 0.35
rpoC 767209 c.3840T>C synonymous_variant 0.33
rpoC 767221 c.3852C>G synonymous_variant 0.42
rpoC 767230 c.3861G>C synonymous_variant 0.29
rpoC 767233 c.3864T>C synonymous_variant 0.38
rpoC 767264 p.Ala1299Gln missense_variant 0.25
rpoC 767275 c.3906T>A synonymous_variant 0.23
rpoC 767278 c.3909T>C synonymous_variant 0.22
rpoC 767281 c.3912C>G synonymous_variant 0.22
rpoC 767284 c.3915C>T synonymous_variant 0.21
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781649 c.90T>C synonymous_variant 0.23
rpsL 781655 c.96T>C synonymous_variant 0.23
rpsL 781682 c.123T>C synonymous_variant 0.22
rpsL 781703 c.144G>A synonymous_variant 0.23
rpsL 781715 c.156T>C synonymous_variant 0.28
rpsL 781718 c.159C>G synonymous_variant 0.28
rpsL 781721 c.162C>T synonymous_variant 0.24
rpsL 781728 c.169T>C synonymous_variant 0.31
rpsL 781736 c.177T>C synonymous_variant 0.23
rpsL 781751 c.192G>C synonymous_variant 0.2
rpsL 781754 c.195G>C synonymous_variant 0.19
rpsL 781760 c.201T>C synonymous_variant 0.28
rpsL 781763 c.204C>G synonymous_variant 0.18
rpsL 781766 c.207C>T synonymous_variant 0.19
rpsL 781808 c.249C>T synonymous_variant 0.29
rpsL 781820 c.261G>T synonymous_variant 0.26
rpsL 781832 c.273T>C synonymous_variant 0.32
rpsL 781868 c.309T>C synonymous_variant 0.28
rpsL 781871 c.312G>C synonymous_variant 0.28
rpsL 781886 c.327C>T synonymous_variant 0.2
rpsL 781892 c.333A>G synonymous_variant 0.28
rpsL 781898 c.339A>T synonymous_variant 0.28
rpsL 781916 c.357T>C synonymous_variant 0.29
rpsL 781929 p.Gly124Ser missense_variant 0.26
rplC 800612 c.-197A>G upstream_gene_variant 0.29
rplC 800618 c.-191T>C upstream_gene_variant 0.29
rplC 800627 c.-182C>T upstream_gene_variant 0.19
rplC 800648 c.-161A>C upstream_gene_variant 0.29
rplC 800654 c.-155T>C upstream_gene_variant 0.23
rplC 800693 c.-116A>C upstream_gene_variant 0.3
rplC 800714 c.-95C>T upstream_gene_variant 0.24
rplC 800715 c.-94_-92delATCinsCTT upstream_gene_variant 0.24
rplC 800723 c.-86C>G upstream_gene_variant 0.24
rplC 800744 c.-65G>A upstream_gene_variant 0.16
rplC 800759 c.-50C>T upstream_gene_variant 0.17
rplC 800771 c.-38C>T upstream_gene_variant 0.17
rplC 801312 c.504G>C synonymous_variant 0.21
rplC 801339 c.531T>G synonymous_variant 0.21
rplC 801341 p.Leu178Gln missense_variant 0.21
rplC 801348 c.540T>G synonymous_variant 0.22
rplC 801357 c.549T>C synonymous_variant 0.21
fbiC 1302818 c.-113G>C upstream_gene_variant 1.0
fbiC 1303506 c.576C>T synonymous_variant 0.15
fbiC 1303512 c.582T>C synonymous_variant 0.2
fbiC 1303537 p.Arg203Leu missense_variant 0.21
fbiC 1303542 c.612C>G synonymous_variant 0.19
fbiC 1303545 c.615A>G synonymous_variant 0.21
fbiC 1303575 c.645G>C synonymous_variant 0.17
fbiC 1303590 c.660A>G synonymous_variant 0.15
fbiC 1303704 c.774T>C synonymous_variant 0.15
fbiC 1303752 c.822A>G synonymous_variant 0.18
fbiC 1304092 p.Met388Leu missense_variant 0.14
fbiC 1304625 c.1695C>T synonymous_variant 0.2
fbiC 1304658 c.1728C>G synonymous_variant 0.15
fbiC 1304757 c.1827A>G synonymous_variant 0.16
fbiC 1304784 c.1854T>G synonymous_variant 0.19
fbiC 1304787 c.1857T>C synonymous_variant 0.18
fbiC 1304799 c.1869G>C synonymous_variant 0.19
fbiC 1304832 c.1902C>T synonymous_variant 0.18
fbiC 1304856 c.1926C>G synonymous_variant 0.19
fbiC 1304877 p.Ile649Met missense_variant 0.16
fbiC 1304893 p.Gly655Ser missense_variant 0.2
fbiC 1304896 c.1966C>T synonymous_variant 0.17
fbiC 1304915 p.Asp662Gly missense_variant 0.21
fbiC 1304937 c.2007G>C synonymous_variant 0.21
fbiC 1304940 c.2010A>G synonymous_variant 0.2
fbiC 1304946 c.2016G>C synonymous_variant 0.21
fbiC 1304958 c.2028T>G synonymous_variant 0.18
fbiC 1304970 c.2040G>C synonymous_variant 0.15
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
atpE 1461185 c.141G>A synonymous_variant 0.17
atpE 1461197 c.153A>C synonymous_variant 0.19
atpE 1461219 c.175T>C synonymous_variant 0.19
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.22
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.22
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.21
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.21
rrs 1471935 n.90T>C non_coding_transcript_exon_variant 0.16
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.33
rrs 1472030 n.185_188delGGGA non_coding_transcript_exon_variant 0.17
rrs 1472040 n.195T>C non_coding_transcript_exon_variant 0.26
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.3
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.3
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.34
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.24
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.37
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.15
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.35
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.22
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.21
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 0.23
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.24
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.25
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.27
rrl 1473797 n.140G>T non_coding_transcript_exon_variant 0.24
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.4
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.23
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.22
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.31
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.32
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.32
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.27
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.26
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.17
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.27
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.3
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.19
rrl 1473987 n.330G>T non_coding_transcript_exon_variant 0.19
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.37
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.16
rrl 1474002 n.345G>A non_coding_transcript_exon_variant 0.16
rrl 1474007 n.350A>G non_coding_transcript_exon_variant 0.17
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.33
rrl 1474061 n.404T>C non_coding_transcript_exon_variant 0.23
rrl 1474083 n.426C>T non_coding_transcript_exon_variant 0.19
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.46
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.3
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.3
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.46
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.42
rrl 1474156 n.499G>A non_coding_transcript_exon_variant 0.25
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.29
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.33
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.27
rrl 1474285 n.629C>T non_coding_transcript_exon_variant 0.23
rrl 1474291 n.635_644delTTCCTCTCCG non_coding_transcript_exon_variant 0.18
rrl 1474303 n.646A>T non_coding_transcript_exon_variant 0.18
rrl 1474306 n.651_655delGGTGG non_coding_transcript_exon_variant 0.21
rrl 1474409 n.756_774delACCCACACGCGCATACGCG non_coding_transcript_exon_variant 0.2
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.3
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.41
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.42
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.48
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.35
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.36
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.22
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.42
rrl 1475005 n.1348C>T non_coding_transcript_exon_variant 0.25
rrl 1475006 n.1349A>G non_coding_transcript_exon_variant 0.25
rrl 1475028 n.1371G>A non_coding_transcript_exon_variant 0.23
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.4
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.21
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.2
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.16
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.2
rrl 1475369 n.1712G>A non_coding_transcript_exon_variant 0.15
rrl 1475379 n.1722G>A non_coding_transcript_exon_variant 0.2
rrl 1475398 n.1741C>T non_coding_transcript_exon_variant 0.21
rrl 1475402 n.1745delC non_coding_transcript_exon_variant 0.23
rrl 1475405 n.1748A>T non_coding_transcript_exon_variant 0.2
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.22
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.29
rrl 1475446 n.1789G>C non_coding_transcript_exon_variant 0.22
rrl 1475453 n.1796T>A non_coding_transcript_exon_variant 0.24
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 0.2
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.2
rrl 1475487 n.1830C>T non_coding_transcript_exon_variant 0.21
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.25
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.4
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.3
rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 0.29
rrl 1475605 n.1948A>T non_coding_transcript_exon_variant 0.28
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.47
rrl 1475617 n.1960C>G non_coding_transcript_exon_variant 0.29
rrl 1475625 n.1968G>C non_coding_transcript_exon_variant 0.3
rrl 1475637 n.1980T>A non_coding_transcript_exon_variant 0.28
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.16
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.28
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.23
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.37
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.18
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.26
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.37
rrl 1475999 n.2342G>T non_coding_transcript_exon_variant 0.17
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.3
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.17
rrl 1476047 n.2390G>A non_coding_transcript_exon_variant 0.17
rrl 1476077 n.2420T>C non_coding_transcript_exon_variant 0.21
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.27
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.27
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.21
rrl 1476104 n.2448delG non_coding_transcript_exon_variant 0.17
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.24
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.19
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.2
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.28
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.22
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.24
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.31
rrl 1476595 n.2938C>T non_coding_transcript_exon_variant 0.17
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.3
rrl 1476602 n.2945G>A non_coding_transcript_exon_variant 0.16
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.27
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.28
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.21
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.15
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.19
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.16
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.34
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.29
rrl 1476755 n.3098G>A non_coding_transcript_exon_variant 0.21
inhA 1673547 c.-655T>C upstream_gene_variant 0.2
inhA 1673712 c.-490A>C upstream_gene_variant 0.18
inhA 1673727 c.-475C>T upstream_gene_variant 0.16
fabG1 1673733 p.Met98Ile missense_variant 0.2
inhA 1673748 c.-454A>G upstream_gene_variant 0.25
fabG1 1673749 p.Lys104Arg missense_variant 0.25
fabG1 1673758 p.Lys107Glu missense_variant 0.22
inhA 1673982 c.-220G>C upstream_gene_variant 0.17
inhA 1673988 c.-214G>C upstream_gene_variant 0.19
inhA 1673991 c.-211C>G upstream_gene_variant 0.19
inhA 1674015 c.-187C>A upstream_gene_variant 0.17
inhA 1674018 c.-184G>C upstream_gene_variant 0.19
inhA 1674024 c.-178T>C upstream_gene_variant 0.23
inhA 1674033 c.-169T>C upstream_gene_variant 0.17
fabG1 1674037 p.Gln200Glu missense_variant 0.17
inhA 1674840 c.639C>T synonymous_variant 0.19
inhA 1674846 p.Ile215Met missense_variant 0.22
inhA 1674870 c.669T>C synonymous_variant 0.21
inhA 1674900 c.699G>A synonymous_variant 0.16
inhA 1674903 c.702T>C synonymous_variant 0.18
inhA 1674904 p.Ala235Pro missense_variant 0.17
inhA 1674927 c.726G>A synonymous_variant 0.16
rpsA 1833554 p.Thr5Ala missense_variant 0.24
rpsA 1833589 c.48A>T synonymous_variant 0.24
rpsA 1833595 c.54T>G synonymous_variant 0.22
rpsA 1833667 c.126C>G synonymous_variant 0.2
rpsA 1833703 c.162C>T synonymous_variant 0.21
rpsA 1833724 c.183C>G synonymous_variant 0.26
rpsA 1833727 c.186G>C synonymous_variant 0.26
rpsA 1833745 c.204G>C synonymous_variant 0.28
rpsA 1833760 c.219C>T synonymous_variant 0.19
rpsA 1833782 p.Ser81Thr missense_variant 0.18
rpsA 1833787 c.246C>G synonymous_variant 0.17
rpsA 1833802 c.261A>G synonymous_variant 0.2
rpsA 1833841 c.300C>G synonymous_variant 0.16
rpsA 1833847 c.306C>G synonymous_variant 0.19
rpsA 1833856 c.315A>G synonymous_variant 0.19
rpsA 1833874 c.333T>C synonymous_variant 0.21
rpsA 1833928 c.387G>C synonymous_variant 0.2
rpsA 1833949 c.408T>C synonymous_variant 0.28
rpsA 1833970 c.429G>C synonymous_variant 0.16
rpsA 1833979 c.438T>C synonymous_variant 0.33
rpsA 1834000 c.459G>C synonymous_variant 0.36
rpsA 1834021 c.480C>T synonymous_variant 0.19
rpsA 1834024 c.483G>A synonymous_variant 0.19
rpsA 1834030 c.489C>G synonymous_variant 0.37
rpsA 1834051 c.510G>A synonymous_variant 0.23
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834186 c.645C>G synonymous_variant 0.17
rpsA 1834189 c.648G>C synonymous_variant 0.17
rpsA 1834234 c.693G>C synonymous_variant 0.18
rpsA 1834249 c.708T>C synonymous_variant 0.22
rpsA 1834255 c.714C>G synonymous_variant 0.17
rpsA 1834258 c.717G>A synonymous_variant 0.16
rpsA 1834261 c.720A>G synonymous_variant 0.22
rpsA 1834294 c.753G>C synonymous_variant 0.15
rpsA 1834306 c.765T>C synonymous_variant 0.25
rpsA 1834348 c.807T>C synonymous_variant 0.3
rpsA 1834366 c.825A>G synonymous_variant 0.28
rpsA 1834396 c.855G>C synonymous_variant 0.2
rpsA 1834489 c.948T>C synonymous_variant 0.16
rpsA 1834495 c.954G>A synonymous_variant 0.19
rpsA 1834528 c.987T>C synonymous_variant 0.24
rpsA 1834546 c.1005T>C synonymous_variant 0.28
rpsA 1834555 c.1014T>C synonymous_variant 0.19
rpsA 1834556 p.Ala339Thr missense_variant 0.19
rpsA 1834609 c.1068T>C synonymous_variant 0.26
rpsA 1834612 c.1071G>A synonymous_variant 0.17
rpsA 1834615 c.1074C>T synonymous_variant 0.26
rpsA 1834624 c.1083G>A synonymous_variant 0.18
rpsA 1834633 c.1092A>G synonymous_variant 0.27
rpsA 1834639 c.1098T>C synonymous_variant 0.27
rpsA 1834654 p.Glu371Asp missense_variant 0.25
rpsA 1834666 c.1125G>C synonymous_variant 0.22
rpsA 1834669 c.1128G>C synonymous_variant 0.22
rpsA 1834690 c.1149T>C synonymous_variant 0.21
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101980 p.Asn355Asp missense_variant 0.2
ndh 2101987 c.1056C>G synonymous_variant 0.17
ndh 2101990 c.1053G>C synonymous_variant 0.23
ndh 2101999 c.1044G>A synonymous_variant 0.23
ndh 2102020 c.1023A>G synonymous_variant 0.17
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223014 p.Tyr51Asn missense_variant 0.98
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 0.29
kasA 2517989 c.-126T>C upstream_gene_variant 0.23
kasA 2518025 c.-90G>C upstream_gene_variant 0.17
kasA 2518519 c.405G>C synonymous_variant 0.17
kasA 2518534 c.420G>C synonymous_variant 0.21
kasA 2518561 c.447T>C synonymous_variant 0.24
kasA 2518567 c.453G>T synonymous_variant 0.22
kasA 2518574 p.Ile154Val missense_variant 0.18
kasA 2518588 c.474T>C synonymous_variant 0.18
kasA 2518642 c.528A>G synonymous_variant 0.19
kasA 2518672 c.558G>C synonymous_variant 0.21
kasA 2518711 c.597A>G synonymous_variant 0.22
kasA 2518735 c.621C>A synonymous_variant 0.18
kasA 2518747 c.633C>G synonymous_variant 0.21
kasA 2518756 c.642G>C synonymous_variant 0.16
kasA 2518783 c.669T>C synonymous_variant 0.17
kasA 2518864 c.750G>C synonymous_variant 0.19
kasA 2518885 c.771T>C synonymous_variant 0.22
kasA 2518906 c.792A>G synonymous_variant 0.19
kasA 2518910 c.796C>T synonymous_variant 0.17
kasA 2518939 c.825T>C synonymous_variant 0.21
kasA 2518942 c.828T>C synonymous_variant 0.21
kasA 2518951 c.837G>A synonymous_variant 0.2
kasA 2518960 c.846C>G synonymous_variant 0.22
kasA 2518963 c.849T>C synonymous_variant 0.22
kasA 2518969 c.855T>G synonymous_variant 0.2
kasA 2518978 c.864T>C synonymous_variant 0.16
kasA 2518979 c.865A>C synonymous_variant 0.16
kasA 2518993 c.879C>G synonymous_variant 0.14
kasA 2519152 c.1038G>T synonymous_variant 0.17
kasA 2519161 c.1047G>A synonymous_variant 0.21
kasA 2519167 c.1053T>G synonymous_variant 0.2
kasA 2519188 c.1074G>A synonymous_variant 0.19
kasA 2519197 c.1083G>C synonymous_variant 0.18
kasA 2519203 c.1089C>G synonymous_variant 0.19
kasA 2519206 c.1092C>T synonymous_variant 0.19
kasA 2519221 c.1107G>C synonymous_variant 0.18
kasA 2519227 c.1113G>C synonymous_variant 0.15
eis 2714846 p.Val163Ile missense_variant 0.98
folC 2746321 c.1278A>G synonymous_variant 0.17
folC 2746333 p.Gly422Gln missense_variant 0.16
folC 2746339 c.1260G>C synonymous_variant 0.18
folC 2746347 p.Ala418Ser missense_variant 0.18
folC 2746351 c.1248C>G synonymous_variant 0.21
folC 2746366 c.1233G>A synonymous_variant 0.24
folC 2746401 p.Ser400Ala missense_variant 0.19
folC 2746438 c.1161G>C synonymous_variant 0.16
folC 2747317 c.282C>G synonymous_variant 0.17
folC 2747338 c.261C>T synonymous_variant 0.16
folC 2747341 p.Val86Leu missense_variant 0.16
pepQ 2860475 c.-57C>T upstream_gene_variant 0.2
Rv2752c 3065595 p.Leu199Phe missense_variant 0.21
Rv2752c 3065612 p.Thr194Ala missense_variant 0.16
Rv2752c 3065916 c.276T>C synonymous_variant 0.15
Rv2752c 3065947 p.Gly82Ala missense_variant 0.23
Rv2752c 3065949 c.243C>T synonymous_variant 0.15
Rv2752c 3065958 c.234G>C synonymous_variant 0.15
Rv2752c 3065993 p.Val67Ile missense_variant 0.16
Rv2752c 3065994 c.198T>C synonymous_variant 0.16
Rv2752c 3066002 p.Met64Leu missense_variant 0.17
thyX 3067280 c.666G>C synonymous_variant 0.19
thyX 3067284 p.Ala221Asp missense_variant 0.19
thyX 3067316 c.630A>G synonymous_variant 0.36
thyX 3067325 c.621A>G synonymous_variant 0.41
thyX 3067331 c.615C>T synonymous_variant 0.16
thyX 3067349 c.597G>C synonymous_variant 0.16
thyX 3067355 c.591A>C synonymous_variant 0.23
thyX 3067360 p.Ile196Val missense_variant 0.19
thyX 3067367 c.579G>C synonymous_variant 0.2
thyX 3067373 c.573C>G synonymous_variant 0.36
thyX 3067382 c.564C>T synonymous_variant 0.2
thyX 3067385 c.561C>G synonymous_variant 0.21
thyX 3067394 c.552G>C synonymous_variant 0.29
thyX 3067406 c.540A>G synonymous_variant 0.18
thyX 3067418 c.528C>G synonymous_variant 0.19
thyX 3067427 c.519G>C synonymous_variant 0.15
thyX 3067430 c.516C>T synonymous_variant 0.15
thyX 3067436 c.510C>G synonymous_variant 0.16
thyX 3067439 c.507A>G synonymous_variant 0.29
thyX 3067442 c.504C>T synonymous_variant 0.14
thyX 3067445 c.501C>G synonymous_variant 0.15
thyA 3073925 c.547T>C synonymous_variant 0.16
thyA 3073932 c.540C>T synonymous_variant 0.17
thyA 3073959 c.513T>C synonymous_variant 0.16
thyA 3073977 c.495A>G synonymous_variant 0.18
thyA 3073983 c.489C>T synonymous_variant 0.15
thyA 3073989 c.483T>C synonymous_variant 0.21
thyA 3074001 c.471C>G synonymous_variant 0.16
thyA 3074031 c.441T>C synonymous_variant 0.2
thyA 3074037 c.435C>G synonymous_variant 0.22
thyA 3074053 p.Arg140Gln missense_variant 0.18
thyA 3074056 p.Glu139Pro missense_variant 0.16
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
rpoA 3877557 c.951C>G synonymous_variant 0.24
rpoA 3877587 c.921A>G synonymous_variant 0.26
rpoA 3877613 p.Ile299Val missense_variant 0.26
rpoA 3877617 c.891G>C synonymous_variant 0.22
rpoA 3877638 c.870T>C synonymous_variant 0.16
rpoA 3877668 c.840A>G synonymous_variant 0.16
rpoA 3877764 c.744C>G synonymous_variant 0.2
rpoA 3877770 c.738A>G synonymous_variant 0.2
rpoA 3877773 c.735G>C synonymous_variant 0.16
rpoA 3877776 c.732T>C synonymous_variant 0.2
rpoA 3877782 c.726T>C synonymous_variant 0.21
rpoA 3877818 c.690A>G synonymous_variant 0.19
rpoA 3877839 c.669G>C synonymous_variant 0.21
rpoA 3877857 c.651G>A synonymous_variant 0.18
rpoA 3877866 c.642G>C synonymous_variant 0.15
rpoA 3877875 c.633T>G synonymous_variant 0.23
rpoA 3877896 c.612G>C synonymous_variant 0.22
rpoA 3877900 p.Ser203Thr missense_variant 0.21
rpoA 3877905 c.603A>G synonymous_variant 0.24
rpoA 3877909 p.Asn200Ser missense_variant 0.25
rpoA 3877920 c.588G>C synonymous_variant 0.16
rpoA 3877986 c.522G>C synonymous_variant 0.21
rpoA 3877989 c.519A>G synonymous_variant 0.23
rpoA 3878001 c.507A>G synonymous_variant 0.25
rpoA 3878022 c.486T>C synonymous_variant 0.16
rpoA 3878028 c.480G>C synonymous_variant 0.15
rpoA 3878061 c.447G>C synonymous_variant 0.18
rpoA 3878106 c.402G>C synonymous_variant 0.3
rpoA 3878118 c.390T>C synonymous_variant 0.29
rpoA 3878130 c.378C>G synonymous_variant 0.17
rpoA 3878157 c.351C>G synonymous_variant 0.29
rpoA 3878163 c.345C>T synonymous_variant 0.26
rpoA 3878169 c.339G>C synonymous_variant 0.17
rpoA 3878193 c.315T>C synonymous_variant 0.28
rpoA 3878217 c.291A>G synonymous_variant 0.31
rpoA 3878247 c.261G>C synonymous_variant 0.28
rpoA 3878256 c.252G>C synonymous_variant 0.27
rpoA 3878262 p.Ser82Gly missense_variant 0.23
rpoA 3878271 c.237T>C synonymous_variant 0.27
rpoA 3878276 c.232C>T synonymous_variant 0.18
rpoA 3878283 p.Glu75Asp missense_variant 0.28
rpoA 3878295 c.213A>G synonymous_variant 0.29
rpoA 3878298 c.210A>G synonymous_variant 0.3
rpoA 3878304 c.204G>C synonymous_variant 0.16
rpoA 3878313 c.195G>C synonymous_variant 0.16
rpoA 3878331 c.177A>G synonymous_variant 0.18
rpoA 3878334 c.174T>C synonymous_variant 0.18
rpoA 3878337 c.171T>C synonymous_variant 0.22
rpoA 3878364 c.144A>C synonymous_variant 0.18
rpoA 3878391 c.117T>G synonymous_variant 0.18
rpoA 3878406 c.102G>T synonymous_variant 0.22
rpoA 3878415 c.93C>T synonymous_variant 0.17
rpoA 3878421 c.87A>T synonymous_variant 0.16
rpoA 3878442 c.66G>C synonymous_variant 0.17
rpoA 3878454 c.54A>G synonymous_variant 0.17
ddn 3986645 c.-199G>A upstream_gene_variant 0.18
ddn 3986648 c.-196C>G upstream_gene_variant 0.23
ddn 3986657 c.-187C>G upstream_gene_variant 0.16
clpC1 4038238 p.Thr823Ala missense_variant 0.22
clpC1 4038239 c.2466T>C synonymous_variant 0.24
clpC1 4038271 p.Pro812Thr missense_variant 0.27
clpC1 4038278 c.2427T>C synonymous_variant 0.34
clpC1 4038289 p.Asn806Asp missense_variant 0.27
clpC1 4038314 c.2391T>C synonymous_variant 0.28
clpC1 4038317 c.2388G>C synonymous_variant 0.24
clpC1 4038320 c.2385G>C synonymous_variant 0.23
clpC1 4038323 c.2382C>G synonymous_variant 0.25
clpC1 4038329 p.Glu792Asp missense_variant 0.28
clpC1 4038350 c.2355C>G synonymous_variant 0.3
clpC1 4038356 c.2349T>C synonymous_variant 0.33
clpC1 4038359 c.2346A>G synonymous_variant 0.32
clpC1 4038368 c.2337T>C synonymous_variant 0.27
clpC1 4038456 p.Val750Glu missense_variant 0.31
clpC1 4038461 c.2244G>T synonymous_variant 0.16
clpC1 4038474 p.Ser744Ala missense_variant 0.17
clpC1 4038486 p.Gly740Thr missense_variant 0.17
clpC1 4038499 p.Ser736Gly missense_variant 0.2
clpC1 4038519 p.Arg729Gln missense_variant 0.35
clpC1 4038530 p.Glu725Asp missense_variant 0.33
clpC1 4038536 c.2169C>T synonymous_variant 0.35
clpC1 4038596 c.2109A>G synonymous_variant 0.35
clpC1 4038623 c.2082A>G synonymous_variant 0.27
clpC1 4038647 c.2058T>C synonymous_variant 0.24
clpC1 4038658 p.Lys683Gln missense_variant 0.23
clpC1 4038661 p.Ser682Thr missense_variant 0.23
clpC1 4038662 c.2043T>C synonymous_variant 0.24
clpC1 4038671 c.2034T>C synonymous_variant 0.27
clpC1 4038674 c.2031C>G synonymous_variant 0.2
clpC1 4038683 c.2022T>C synonymous_variant 0.17
clpC1 4038692 c.2013C>G synonymous_variant 0.17
clpC1 4038704 c.2001T>C synonymous_variant 0.21
clpC1 4038713 c.1992T>C synonymous_variant 0.25
clpC1 4038790 c.1915C>T synonymous_variant 0.26
clpC1 4038812 c.1893T>C synonymous_variant 0.28
clpC1 4038815 c.1890G>A synonymous_variant 0.17
clpC1 4038845 c.1858_1860delTCGinsAGC synonymous_variant 0.2
clpC1 4038878 c.1827A>G synonymous_variant 0.36
clpC1 4038890 c.1815G>A synonymous_variant 0.3
clpC1 4038908 c.1797C>G synonymous_variant 0.37
clpC1 4038914 c.1791G>C synonymous_variant 0.37
clpC1 4038917 c.1788C>T synonymous_variant 0.26
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.34
clpC1 4038953 c.1752A>G synonymous_variant 0.35
clpC1 4038956 c.1749T>C synonymous_variant 0.34
clpC1 4038965 c.1740T>C synonymous_variant 0.36
clpC1 4038971 c.1734T>C synonymous_variant 0.35
clpC1 4038974 c.1731T>C synonymous_variant 0.34
clpC1 4038980 c.1725C>T synonymous_variant 0.35
clpC1 4038989 c.1716T>C synonymous_variant 0.36
clpC1 4038997 c.1708T>C synonymous_variant 0.29
clpC1 4039021 c.1684C>T synonymous_variant 0.23
clpC1 4039022 c.1683A>G synonymous_variant 0.28
clpC1 4039073 c.1632C>T synonymous_variant 0.21
clpC1 4039085 c.1620A>G synonymous_variant 0.3
clpC1 4039097 c.1608G>C synonymous_variant 0.27
clpC1 4039103 c.1602T>C synonymous_variant 0.27
clpC1 4039106 c.1599G>C synonymous_variant 0.27
clpC1 4039112 c.1593C>G synonymous_variant 0.27
clpC1 4039121 c.1584T>C synonymous_variant 0.3
clpC1 4039133 c.1572C>G synonymous_variant 0.31
clpC1 4039136 c.1569C>T synonymous_variant 0.2
clpC1 4039140 p.Glu522Val missense_variant 0.19
clpC1 4039142 c.1563A>G synonymous_variant 0.32
clpC1 4039145 c.1560G>C synonymous_variant 0.32
clpC1 4039169 p.Glu512Asp missense_variant 0.21
clpC1 4039172 c.1533A>G synonymous_variant 0.32
clpC1 4039178 c.1527G>C synonymous_variant 0.19
clpC1 4039183 c.1522T>C synonymous_variant 0.32
clpC1 4039190 c.1515C>G synonymous_variant 0.2
clpC1 4039223 c.1482C>T synonymous_variant 0.21
clpC1 4039226 c.1479T>C synonymous_variant 0.3
clpC1 4039238 c.1467C>T synonymous_variant 0.22
clpC1 4039268 c.1437C>T synonymous_variant 0.22
clpC1 4039274 c.1431G>T synonymous_variant 0.22
clpC1 4039277 c.1428C>T synonymous_variant 0.19
clpC1 4039283 c.1422C>T synonymous_variant 0.16
clpC1 4039286 c.1419T>C synonymous_variant 0.2
clpC1 4039292 c.1413C>T synonymous_variant 0.21
clpC1 4039319 p.Ala462Thr missense_variant 0.23
clpC1 4039322 c.1383T>G synonymous_variant 0.19
clpC1 4039328 c.1377A>T synonymous_variant 0.19
clpC1 4039338 p.Thr456Gln missense_variant 0.21
clpC1 4039355 c.1350G>T synonymous_variant 0.21
clpC1 4039391 c.1314T>G synonymous_variant 0.23
clpC1 4039409 c.1296T>C synonymous_variant 0.25
clpC1 4039412 c.1293T>G synonymous_variant 0.23
clpC1 4039430 c.1275T>C synonymous_variant 0.23
clpC1 4039442 c.1263A>G synonymous_variant 0.25
clpC1 4039454 c.1251A>T synonymous_variant 0.2
clpC1 4039463 c.1242C>G synonymous_variant 0.27
clpC1 4039466 c.1239T>C synonymous_variant 0.23
clpC1 4039469 c.1236T>C synonymous_variant 0.23
clpC1 4039472 c.1233G>T synonymous_variant 0.18
clpC1 4039481 c.1224T>C synonymous_variant 0.25
clpC1 4039484 c.1221T>C synonymous_variant 0.23
clpC1 4039517 c.1188C>G synonymous_variant 0.24
clpC1 4039610 c.1095G>C synonymous_variant 0.17
clpC1 4039661 c.1044T>C synonymous_variant 0.24
clpC1 4039673 c.1032G>C synonymous_variant 0.23
clpC1 4039694 c.1011G>C synonymous_variant 0.37
clpC1 4039715 c.990G>A synonymous_variant 0.3
clpC1 4039724 c.981A>G synonymous_variant 0.31
clpC1 4039727 c.978C>T synonymous_variant 0.29
clpC1 4039748 c.957G>C synonymous_variant 0.29
clpC1 4039751 c.954A>G synonymous_variant 0.29
clpC1 4039760 c.945T>C synonymous_variant 0.25
clpC1 4039766 c.939T>C synonymous_variant 0.24
clpC1 4039769 c.936C>G synonymous_variant 0.23
clpC1 4039778 c.927A>G synonymous_variant 0.25
clpC1 4039781 c.924G>C synonymous_variant 0.25
clpC1 4039790 c.915C>G synonymous_variant 0.26
clpC1 4039796 c.909C>T synonymous_variant 0.27
clpC1 4039817 c.888A>T synonymous_variant 0.27
clpC1 4039820 c.885T>C synonymous_variant 0.32
clpC1 4039826 c.879C>G synonymous_variant 0.29
clpC1 4039831 c.874T>C synonymous_variant 0.29
clpC1 4039850 c.855T>C synonymous_variant 0.26
clpC1 4039865 c.840T>C synonymous_variant 0.25
clpC1 4039898 c.807C>G synonymous_variant 0.22
clpC1 4039931 c.774T>C synonymous_variant 0.31
clpC1 4039934 c.771G>C synonymous_variant 0.23
clpC1 4039946 c.759A>T synonymous_variant 0.25
clpC1 4039952 c.753T>C synonymous_variant 0.31
clpC1 4039955 c.750G>C synonymous_variant 0.21
clpC1 4039958 c.747G>C synonymous_variant 0.31
clpC1 4039979 c.726C>G synonymous_variant 0.18
clpC1 4040021 c.684A>C synonymous_variant 0.22
clpC1 4040030 c.675C>G synonymous_variant 0.16
clpC1 4040033 c.672G>C synonymous_variant 0.22
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.17
clpC1 4040093 c.612C>G synonymous_variant 0.27
clpC1 4040105 c.600C>G synonymous_variant 0.32
clpC1 4040147 c.558A>G synonymous_variant 0.17
clpC1 4040171 c.534C>G synonymous_variant 0.15
clpC1 4040243 c.462C>G synonymous_variant 0.16
clpC1 4040249 c.456A>G synonymous_variant 0.23
clpC1 4040267 c.438A>G synonymous_variant 0.18
clpC1 4040288 c.417C>T synonymous_variant 0.19
clpC1 4040321 c.384C>T synonymous_variant 0.19
clpC1 4040342 c.363C>G synonymous_variant 0.16
clpC1 4040480 c.225T>C synonymous_variant 0.17
clpC1 4040486 c.219G>C synonymous_variant 0.16
clpC1 4040522 c.183T>C synonymous_variant 0.2
clpC1 4040528 c.177G>C synonymous_variant 0.19
clpC1 4040531 c.174T>C synonymous_variant 0.16
clpC1 4040537 c.168G>C synonymous_variant 0.16
clpC1 4040549 c.154_156delTTGinsCTT synonymous_variant 0.18
clpC1 4040561 c.144A>G synonymous_variant 0.2
clpC1 4040567 c.138C>G synonymous_variant 0.15
clpC1 4040573 c.132T>C synonymous_variant 0.16
clpC1 4040597 c.108C>T synonymous_variant 0.18
clpC1 4040600 c.105A>G synonymous_variant 0.17
clpC1 4040603 c.102T>G synonymous_variant 0.16
clpC1 4040644 c.61A>C synonymous_variant 0.17
clpC1 4040654 c.51G>A synonymous_variant 0.17
panD 4044195 c.87T>C synonymous_variant 0.17
embC 4240486 c.624G>A synonymous_variant 0.19
embC 4240489 c.627A>G synonymous_variant 0.17
embC 4240495 c.633T>C synonymous_variant 0.18
embC 4240516 c.654G>C synonymous_variant 0.15
embC 4240519 c.657T>C synonymous_variant 0.15
embC 4240717 c.855T>C synonymous_variant 0.2
embC 4240726 c.864G>C synonymous_variant 0.2
embC 4240741 c.879C>T synonymous_variant 0.23
embC 4240783 c.921G>C synonymous_variant 0.29
embC 4240789 c.927T>C synonymous_variant 0.22
embC 4240811 p.Phe317Leu missense_variant 0.19
embC 4240819 c.957A>G synonymous_variant 0.19
embC 4240831 c.969T>G synonymous_variant 0.19
embC 4240837 c.975C>G synonymous_variant 0.17
embC 4241617 c.1755G>A synonymous_variant 0.16
embC 4241626 c.1764T>C synonymous_variant 0.18
embA 4242391 c.-842G>T upstream_gene_variant 0.15
embA 4242400 c.-833C>G upstream_gene_variant 0.17
embC 4242402 p.Arg847His missense_variant 0.17
embA 4242406 c.-827A>T upstream_gene_variant 0.2
embA 4242427 c.-806A>G upstream_gene_variant 0.18
embC 4242428 p.Ala856Pro missense_variant 0.17
embC 4242434 p.Val858Ile missense_variant 0.18
embA 4242448 c.-785C>G upstream_gene_variant 0.18
embA 4242460 c.-773G>C upstream_gene_variant 0.18
embA 4242463 c.-770C>G upstream_gene_variant 0.18
embA 4242473 c.-760C>T upstream_gene_variant 0.18
embA 4242535 c.-698C>T upstream_gene_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4244132 c.900G>C synonymous_variant 0.16
embA 4244165 c.933T>G synonymous_variant 0.23
embA 4244170 p.Gln313Arg missense_variant 0.23
embA 4244178 p.Ala316Ser missense_variant 0.19
embA 4244831 p.Phe533Leu missense_variant 0.22
embA 4244843 c.1611G>C synonymous_variant 0.22
embA 4244846 c.1614C>T synonymous_variant 0.21
embA 4244856 p.Ala542Gln missense_variant 0.2
embA 4244885 c.1653A>G synonymous_variant 0.23
embA 4244886 c.1654C>T synonymous_variant 0.23
embA 4244897 c.1665T>C synonymous_variant 0.23
embA 4244900 c.1668G>C synonymous_variant 0.2
embA 4244904 p.Val558Leu missense_variant 0.21
embA 4244909 c.1677C>G synonymous_variant 0.21
embA 4244916 c.1684C>T synonymous_variant 0.18
embA 4244921 c.1689C>G synonymous_variant 0.18
embB 4246346 c.-168C>G upstream_gene_variant 0.18
embA 4246359 p.Ala1043Ser missense_variant 0.19
embB 4246373 c.-141T>C upstream_gene_variant 0.15
embB 4247062 c.549G>C synonymous_variant 0.19
embB 4247089 c.576G>C synonymous_variant 0.21
embB 4247095 c.582G>A synonymous_variant 0.22
embB 4247104 c.591G>A synonymous_variant 0.19
embB 4247113 c.600G>A synonymous_variant 0.19
embB 4247114 p.Ala201Lys missense_variant 0.17
embB 4247117 p.Val202Leu missense_variant 0.19
embB 4247365 c.852A>C synonymous_variant 0.19
embB 4247371 c.858C>G synonymous_variant 0.21
embB 4247375 p.Leu288Val missense_variant 0.18
embB 4247380 c.867C>G synonymous_variant 0.16
embB 4247386 c.873T>C synonymous_variant 0.21
embB 4247389 c.876C>G synonymous_variant 0.15
embB 4247395 c.882C>A synonymous_variant 0.15
embB 4247401 c.888T>C synonymous_variant 0.2
embB 4247470 c.957T>C synonymous_variant 0.22
embB 4247497 c.984T>C synonymous_variant 0.27
embB 4247500 c.987C>G synonymous_variant 0.27
embB 4247512 c.999T>C synonymous_variant 0.29
embB 4247554 c.1041T>C synonymous_variant 0.25
embB 4247555 p.Leu348Met missense_variant 0.15
embB 4247590 c.1077A>G synonymous_variant 0.18
embB 4247761 c.1248T>C synonymous_variant 0.16
embB 4248007 c.1494C>G synonymous_variant 0.27
embB 4248035 p.Val508Ile missense_variant 0.16
embB 4248041 p.Ala510Thr missense_variant 0.16
embB 4248044 p.Lys511Asp missense_variant 0.16
embB 4248055 c.1542G>C synonymous_variant 0.32
embB 4248064 c.1551G>C synonymous_variant 0.31
embB 4248070 c.1557T>C synonymous_variant 0.32
embB 4248085 c.1572T>C synonymous_variant 0.21
embB 4248097 c.1584C>G synonymous_variant 0.23
embB 4248115 c.1602C>T synonymous_variant 0.82
embB 4248142 c.1629T>C synonymous_variant 0.17
embB 4248206 p.Ser565Gly missense_variant 0.2
embB 4248217 c.1704C>G synonymous_variant 0.23
embB 4248220 c.1707A>G synonymous_variant 0.22
embB 4248233 c.1720C>T synonymous_variant 0.25
embB 4248252 p.Gly580Ala missense_variant 0.14
embB 4248277 c.1764G>C synonymous_variant 0.33
embB 4248280 c.1767C>G synonymous_variant 0.33
embB 4248316 c.1803C>G synonymous_variant 0.39
embB 4248319 c.1806A>G synonymous_variant 0.39
embB 4248322 c.1809G>C synonymous_variant 0.19
embB 4248328 c.1815G>A synonymous_variant 0.2
embB 4248334 c.1821C>G synonymous_variant 0.18
embB 4248337 c.1824G>C synonymous_variant 0.19
embB 4248349 c.1836G>A synonymous_variant 0.19
embB 4248350 c.1837T>C synonymous_variant 0.17
embB 4248358 c.1845C>G synonymous_variant 0.34
embB 4248361 c.1848A>G synonymous_variant 0.32
embB 4248379 c.1866G>A synonymous_variant 0.2
embB 4248430 c.1917T>C synonymous_variant 0.16
embB 4248670 c.2157C>T synonymous_variant 0.14
embB 4248676 c.2163C>G synonymous_variant 0.17
embB 4248697 c.2184A>C synonymous_variant 0.17
embB 4248706 c.2193G>C synonymous_variant 0.17
embB 4248731 p.Val740Leu missense_variant 0.19
embB 4248742 c.2229T>C synonymous_variant 0.19
embB 4249521 p.Ala1003Val missense_variant 0.16
aftB 4267622 c.1213_1215delTCGinsAGC synonymous_variant 0.22
aftB 4267625 c.1212T>C synonymous_variant 0.16
aftB 4267634 p.Arg401His missense_variant 0.2
aftB 4267647 p.Asp397Cys missense_variant 0.77
aftB 4267655 c.1182C>G synonymous_variant 0.2
aftB 4267670 c.1167G>A synonymous_variant 0.18
aftB 4269006 c.-170T>C upstream_gene_variant 0.16
aftB 4269144 c.-308C>G upstream_gene_variant 0.15
aftB 4269164 c.-328T>C upstream_gene_variant 0.15
aftB 4269177 c.-341G>A upstream_gene_variant 0.15
ethR 4327396 c.-153A>G upstream_gene_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0