Rv0486 - c.229C>T
Drug resistance types
48 Sensitive
2 RR-TB
31 HR-TB
20 MDR-TB
5 Pre-XDR-TB
3 XDR-TB
39 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 70 |
| lineage2.1;lineage4.9 | 6 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.9 | 13 |
| 7 | |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| lineage2.1 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage6.3.1 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.1.2.1 | 1 |
| lineage3 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La3 | 1 |
| lineage2.2.1.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 148 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11138628 | MDR-TB | lineage2.2.1 | None | SRR28467052 | HR-TB | lineage2.2.1 | None | SRR28467051 | MDR-TB | lineage2.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1202635 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR1184294 | Other | lineage4.9 | None | SRR29093131 | MDR-TB | lineage2.2.1 | None | ERR502912 | Other | lineage2.2.1 | None | SRR28467065 | HR-TB | lineage2.2.1 | None | SRR30182786 | Sensitive | lineage2.2.1 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | ERR234659 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR29053368 | Sensitive | lineage2.2.1 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR11082693 | Sensitive | lineage2.2.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR13245253 | XDR-TB | lineage2.2.1 | None | ERR13194032 | MDR-TB | lineage2.2.1 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SAMN02398695 | Pre-XDR-TB | lineage2.2.1 | kr | ERR9786569 | Other | lineage4.8 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1020015 | Sensitive | lineage2.2.1 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | DRR130221 | Sensitive | lineage2.2.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR13195057 | MDR-TB | lineage2.2.1 | None | ERR13235264 | MDR-TB | lineage2.2.1 | None | SRR1013587 | Sensitive | lineage2.2.1 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | SRR1048972 | Sensitive | lineage2.2.1 | None | SRR1208285 | Sensitive | lineage2.2.1 | None | SRR21733049 | Sensitive | lineage2.2.1 | None | SRR1208401 | Sensitive | lineage2.2.1 | None | ERR11138615 | MDR-TB | lineage2.2.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR6789626 | Other | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR17657936 | MDR-TB | lineage2.2.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR1208218 | Sensitive | lineage2.2.1 | None | SRR7535086 | Other | None | ERR13243570 | MDR-TB | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1208389 | Sensitive | lineage2.2.1 | None | SRR1202511 | Sensitive | lineage2.2.1 | None | SRR1202588 | Sensitive | lineage2.2.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR1202601 | Sensitive | lineage2.2.1 | None | SRR1208177 | Sensitive | lineage2.2.1 | None | SRR1208311 | Sensitive | lineage2.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR1208258 | Sensitive | lineage2.2.1 | None | ERR13194147 | Sensitive | lineage2.2.1 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | DRR034399 | Sensitive | lineage2.2.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045555 | Other | lineage4.9 | None | ERR9786604 | Other | None | SRR1144757 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR13194112 | Sensitive | lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1202646 | Sensitive | lineage2.2.1 | None | SRR29093373 | MDR-TB | lineage2.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR13296462 | Sensitive | lineage2.2.1 | None | SRR1208251 | Sensitive | lineage2.2.1 | None | SRR22251731 | Sensitive | lineage2.2.1 | None | DRR034535 | Sensitive | lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR28467042 | MDR-TB | lineage2.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR1048973 | Sensitive | lineage2.2.1 | None | SAMN02360573 | Sensitive | lineage2.2.1 | kr | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | DRR034400 | Sensitive | lineage2.2.1 | None | DRR188996 | Sensitive | lineage2.2.1 | None | SRR7496501 | Sensitive | lineage2.2.1 | us | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1202608 | Sensitive | lineage2.2.1 | None | SRR15315834 | MDR-TB | lineage2.2.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR29093903 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR1013588 | Sensitive | lineage2.2.1 | None | ERR3132288 | MDR-TB | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR29093371 | MDR-TB | lineage2.2.1 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1208349 | Sensitive | lineage2.2.1 | None | SRR7496472 | Other | lineage4.9 | None | SRR1202558 | Sensitive | lineage2.2.1 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR212001 | HR-TB | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR13230687 | Sensitive | lineage2.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | SRR29093381 | MDR-TB | lineage2.2.1 | None | SRR29093948 | MDR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR22249744 | Sensitive | lineage2.2.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR19320503 | Sensitive | lineage2.2.1 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1208279 | Sensitive | lineage2.2.1 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1208307 | Sensitive | lineage2.2.1 | None | SRR1208333 | Sensitive | lineage2.2.1 | None | ERR4819789 | Sensitive | lineage2.2.1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR21727753 | Sensitive | lineage2.2.1 | None | SRR1208197 | Sensitive | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None |
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