Rv3596c - c.1467C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
36 Sensitive
4 RR-TB
16 HR-TB
7 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
30 Other
lineage Counts
| lineage | Count |
|---|---|
| La2;lineage4.9 | 1 |
| lineage4.9 | 46 |
| lineage4.1.1.1 | 1 |
| lineage3 | 2 |
| M.canetti;lineage1 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.2;lineage4.9 | 2 |
| lineage2.2.1 | 4 |
| lineage4.7 | 2 |
| lineage4.1.2.1 | 3 |
| lineage6.1.1 | 2 |
| lineage4 | 3 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage3.1.2.1 | 1 |
| La1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| 1 | |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage5.1.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 93 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR349299 | Other | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR13285136 | HR-TB | lineage4.7 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR6046802 | Other | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR29096150 | Other | lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR349264 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR6865502 | Sensitive | lineage4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR363502 | Other | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR11043529 | HR-TB | lineage4.7 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR363498 | Sensitive | lineage4.9 | None |
|---|
