lineage | Count |
---|---|
lineage4.9 | 10 |
lineage4.1 | 1 |
49 | |
lineage4 | 17 |
lineage4.8 | 3 |
lineage3 | 5 |
lineage2.2.1 | 9 |
La2 | 1 |
lineage4.3.4.1 | 3 |
lineage4.3.4.2.1 | 4 |
lineage4.4.1.2 | 1 |
lineage4.4.2 | 1 |
lineage2.2 | 5 |
lineage4;lineage3.1 | 1 |
lineage6.1.1 | 2 |
lineage4.9;La1.3 | 1 |
La1.3 | 1 |
La1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage3.1.2 | 1 |
lineage4.5 | 1 |
lineage4.1.2.1 | 2 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.1.2 | 2 |
lineage2.2.1.1 | 4 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.4.1.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
spoligotype | Count |
---|---|
None | 131 |
ID | Drug resistance | Lineage | Country iso2 | ERR4818607 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818929 | HR-TB | None | SRR5341373 | HR-TB | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341456 | Other | None | SRR5535933 | HR-TB | None | SRR5341313 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341470 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046492 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046397 | Other | None | ERR4831117 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR294266 | HR-TB | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323039 | HR-TB | None | ERR323053 | HR-TB | None | SRR7535086 | Other | None | ERR11465015 | Sensitive | lineage4.3.4.2.1 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323108 | HR-TB | lineage4 | None | ERR1063857 | HR-TB | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR3283014 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR3283028 | Other | None | ERR3283025 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797046 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR3797064 | Sensitive | None | ERR3799304 | Other | lineage6.1.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4798504 | Other | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR736865 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | SRR1172214 | HR-TB | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR987722 | HR-TB | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1174897 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR17658565 | Other | lineage3 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR11050805 | Sensitive | lineage4.4.1.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675270 | HR-TB | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR176740 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR4815909 | Other | lineage4.8 | None | ERR212138 | HR-TB | lineage4 | None | SRR3675510 | Other | None | SRR3675571 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4816466 | HR-TB | None |
---|