TB-Profiler result

Run: ERR2514327
Summary

Run ID: ERR2514327

Sample name:

Date: 31-03-2023 20:16:23

Number of reads: 2554990

Percentage reads mapped: 73.54

Strain: lineage4.8

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.98
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 0.96
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.5 streptomycin
katG 2155168 p.Ser315Thr missense_variant 0.96 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6700 c.-602T>C upstream_gene_variant 0.2
gyrA 6703 c.-599G>C upstream_gene_variant 0.2
gyrA 6709 c.-593A>G upstream_gene_variant 0.21
gyrA 6712 c.-590G>C upstream_gene_variant 0.21
gyrA 6724 c.-578G>C upstream_gene_variant 0.22
gyrA 6730 c.-572A>G upstream_gene_variant 0.23
gyrA 6745 c.-557T>C upstream_gene_variant 0.27
gyrA 6760 c.-542G>C upstream_gene_variant 0.25
gyrA 6793 c.-509T>C upstream_gene_variant 0.26
gyrB 6797 p.Gly520Thr missense_variant 0.24
gyrA 6901 c.-401G>A upstream_gene_variant 0.16
gyrA 6904 c.-398C>G upstream_gene_variant 0.16
gyrA 6910 c.-392G>A upstream_gene_variant 0.17
gyrA 7078 c.-224A>G upstream_gene_variant 0.2
gyrA 7093 c.-209T>G upstream_gene_variant 0.23
gyrA 7096 c.-206G>A upstream_gene_variant 0.23
gyrA 7108 c.-194G>A upstream_gene_variant 0.25
gyrA 7114 c.-188C>G upstream_gene_variant 0.24
gyrA 7120 c.-182T>C upstream_gene_variant 0.26
gyrA 7123 c.-179C>G upstream_gene_variant 0.27
gyrA 7132 c.-170T>G upstream_gene_variant 0.28
gyrA 7136 c.-166T>C upstream_gene_variant 0.3
gyrA 7144 c.-158A>G upstream_gene_variant 0.3
gyrA 7147 c.-155G>C upstream_gene_variant 0.31
gyrA 7150 c.-152G>C upstream_gene_variant 0.3
gyrA 7165 c.-137C>G upstream_gene_variant 0.3
gyrA 7168 c.-134C>G upstream_gene_variant 0.31
gyrA 7177 c.-125G>A upstream_gene_variant 0.31
gyrA 7198 c.-104C>T upstream_gene_variant 0.25
gyrA 7201 c.-101G>A upstream_gene_variant 0.22
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7403 c.102C>T synonymous_variant 0.15
gyrA 7412 c.111C>G synonymous_variant 0.17
gyrA 7421 c.120G>A synonymous_variant 0.17
gyrA 7433 c.132G>C synonymous_variant 0.18
gyrA 7442 c.141G>A synonymous_variant 0.16
gyrA 7451 c.150C>G synonymous_variant 0.17
gyrA 7454 c.153G>A synonymous_variant 0.16
gyrA 7457 c.156T>C synonymous_variant 0.16
gyrA 7460 c.159C>G synonymous_variant 0.16
gyrA 7475 c.174A>C synonymous_variant 0.18
gyrA 7480 p.Phe60Tyr missense_variant 0.18
gyrA 7484 c.183T>C synonymous_variant 0.18
gyrA 7487 c.186C>G synonymous_variant 0.17
gyrA 7490 c.189C>A synonymous_variant 0.18
gyrA 7523 c.222C>G synonymous_variant 0.22
gyrA 7532 c.231T>C synonymous_variant 0.21
gyrA 7541 c.240C>G synonymous_variant 0.24
gyrA 7547 c.246C>T synonymous_variant 0.23
gyrA 7553 c.252C>T synonymous_variant 0.17
gyrA 7637 c.336C>G synonymous_variant 0.16
gyrA 7728 c.427A>C synonymous_variant 0.15
gyrA 7763 c.462T>G synonymous_variant 0.18
gyrA 7835 c.534A>C synonymous_variant 0.16
gyrA 8345 c.1044C>T synonymous_variant 0.16
gyrA 8354 c.1053G>C synonymous_variant 0.16
gyrA 8375 c.1074G>C synonymous_variant 0.17
gyrA 8382 p.Leu361Met missense_variant 0.17
gyrA 8420 c.1119T>C synonymous_variant 0.19
gyrA 8423 c.1122G>T synonymous_variant 0.18
gyrA 8426 c.1125G>C synonymous_variant 0.18
gyrA 8442 c.1141C>T synonymous_variant 0.19
gyrA 8447 c.1146C>A synonymous_variant 0.2
gyrA 8453 c.1152A>C synonymous_variant 0.18
gyrA 8459 c.1158G>A synonymous_variant 0.2
gyrA 8462 c.1161A>T synonymous_variant 0.19
gyrA 8471 c.1170T>C synonymous_variant 0.19
gyrA 8480 c.1179C>T synonymous_variant 0.2
gyrA 8486 c.1185T>C synonymous_variant 0.18
gyrA 8489 c.1188A>G synonymous_variant 0.19
gyrA 8492 c.1191G>A synonymous_variant 0.18
gyrA 8516 c.1215T>C synonymous_variant 0.17
gyrA 8519 c.1218A>G synonymous_variant 0.16
gyrA 8537 c.1236G>A synonymous_variant 0.18
gyrA 8540 c.1239C>G synonymous_variant 0.2
gyrA 8546 c.1245T>C synonymous_variant 0.2
gyrA 8555 c.1254G>C synonymous_variant 0.21
gyrA 8561 c.1260A>G synonymous_variant 0.18
gyrA 8562 c.1261C>T synonymous_variant 0.18
gyrA 8570 c.1269G>A synonymous_variant 0.2
gyrA 8603 c.1302A>G synonymous_variant 0.16
gyrA 8609 c.1308G>C synonymous_variant 0.16
gyrA 8633 c.1332C>G synonymous_variant 0.19
gyrA 8636 c.1335A>C synonymous_variant 0.18
gyrA 8642 c.1341A>G synonymous_variant 0.19
gyrA 8666 c.1365G>A synonymous_variant 0.19
gyrA 8672 c.1371A>G synonymous_variant 0.21
gyrA 8693 c.1392T>C synonymous_variant 0.23
gyrA 8696 c.1395G>C synonymous_variant 0.23
gyrA 8705 c.1404C>T synonymous_variant 0.23
gyrA 8706 c.1405C>T synonymous_variant 0.24
gyrA 8711 c.1410A>C synonymous_variant 0.22
gyrA 8714 c.1413A>G synonymous_variant 0.23
gyrA 8717 c.1416C>G synonymous_variant 0.24
gyrA 8718 p.Glu473Lys missense_variant 0.23
gyrA 8732 c.1431G>C synonymous_variant 0.27
gyrA 8756 c.1455A>G synonymous_variant 0.27
gyrA 8762 c.1461G>C synonymous_variant 0.27
gyrA 8767 p.Arg489Lys missense_variant 0.28
gyrA 8783 c.1482G>T synonymous_variant 0.27
gyrA 8786 c.1485T>C synonymous_variant 0.27
gyrA 8796 p.Ile499Val missense_variant 0.23
gyrA 8810 c.1509A>C synonymous_variant 0.18
gyrA 8813 p.Asp504Glu missense_variant 0.21
gyrA 8822 p.Asp507Glu missense_variant 0.24
gyrA 8828 c.1527T>C synonymous_variant 0.21
gyrA 8829 c.1528T>C synonymous_variant 0.21
gyrA 8852 c.1551T>C synonymous_variant 0.2
gyrA 8858 c.1557T>C synonymous_variant 0.18
gyrA 8867 c.1566A>G synonymous_variant 0.17
gyrA 8870 c.1569G>T synonymous_variant 0.17
gyrA 8903 c.1602T>C synonymous_variant 0.16
gyrA 8915 c.1614A>G synonymous_variant 0.18
gyrA 9176 c.1875G>A synonymous_variant 0.17
gyrA 9179 c.1878C>G synonymous_variant 0.16
gyrA 9182 c.1881T>C synonymous_variant 0.18
gyrA 9192 c.1891C>T synonymous_variant 0.15
gyrA 9197 c.1896G>C synonymous_variant 0.16
gyrA 9204 p.Ser635Thr missense_variant 0.16
gyrA 9227 c.1926C>G synonymous_variant 0.19
gyrA 9230 c.1929T>C synonymous_variant 0.18
gyrA 9233 c.1932C>G synonymous_variant 0.18
gyrA 9239 c.1938C>T synonymous_variant 0.17
gyrA 9242 c.1941A>G synonymous_variant 0.17
gyrA 9252 p.Val651Ile missense_variant 0.2
gyrA 9275 c.1974G>A synonymous_variant 0.17
gyrA 9296 c.1995T>C synonymous_variant 0.17
gyrA 9303 p.Gly668Thr missense_variant 0.18
fgd1 490830 c.48A>C synonymous_variant 0.15
fgd1 490851 c.69A>C synonymous_variant 0.19
fgd1 490869 c.87C>G synonymous_variant 0.15
fgd1 490905 c.123T>C synonymous_variant 0.15
fgd1 491244 c.462T>C synonymous_variant 0.16
fgd1 491259 c.477T>C synonymous_variant 0.25
fgd1 491281 p.Asp167Pro missense_variant 0.21
fgd1 491286 c.504G>C synonymous_variant 0.21
fgd1 491292 c.510G>C synonymous_variant 0.21
fgd1 491296 p.Val172Ile missense_variant 0.21
fgd1 491310 c.528C>G synonymous_variant 0.23
fgd1 491316 c.534C>A synonymous_variant 0.22
mshA 575734 c.387T>G synonymous_variant 0.19
mshA 575752 c.405G>C synonymous_variant 0.22
mshA 575764 c.417C>G synonymous_variant 0.23
mshA 575767 c.420G>A synonymous_variant 0.22
mshA 575771 p.Val142Ser missense_variant 0.22
mshA 575785 c.438T>C synonymous_variant 0.25
mshA 575803 c.456C>T synonymous_variant 0.2
mshA 575809 c.462C>T synonymous_variant 0.2
mshA 575821 c.474G>C synonymous_variant 0.21
mshA 575824 c.477T>A synonymous_variant 0.21
mshA 575837 c.490C>T synonymous_variant 0.24
mshA 575842 c.495G>C synonymous_variant 0.26
mshA 575864 c.517T>C synonymous_variant 0.22
mshA 575878 c.531A>G synonymous_variant 0.2
ccsA 620349 c.459A>G synonymous_variant 0.17
rpoB 760091 c.285G>C synonymous_variant 0.18
rpoB 760101 c.295T>C synonymous_variant 0.21
rpoB 760112 c.306T>C synonymous_variant 0.23
rpoB 760118 c.312T>C synonymous_variant 0.23
rpoB 760130 p.Asp108Glu missense_variant 0.24
rpoB 760139 c.333A>G synonymous_variant 0.25
rpoB 760142 c.336C>G synonymous_variant 0.23
rpoB 760181 c.375T>C synonymous_variant 0.28
rpoB 760184 c.378A>G synonymous_variant 0.28
rpoB 760196 c.390C>G synonymous_variant 0.25
rpoB 760223 c.417T>C synonymous_variant 0.26
rpoB 760235 c.429T>C synonymous_variant 0.23
rpoB 760253 c.447T>C synonymous_variant 0.25
rpoB 760283 c.477G>C synonymous_variant 0.22
rpoB 760304 c.498G>A synonymous_variant 0.21
rpoB 760313 c.507G>C synonymous_variant 0.21
rpoB 760331 c.525G>C synonymous_variant 0.23
rpoB 760340 c.534G>C synonymous_variant 0.23
rpoB 760343 c.537G>C synonymous_variant 0.24
rpoB 760361 c.555T>C synonymous_variant 0.23
rpoB 760376 p.Asp190Glu missense_variant 0.21
rpoB 760380 p.Thr192Leu missense_variant 0.2
rpoB 760406 c.600G>C synonymous_variant 0.23
rpoB 760415 c.609C>T synonymous_variant 0.24
rpoB 760424 c.618C>G synonymous_variant 0.23
rpoB 760430 c.624T>C synonymous_variant 0.21
rpoB 760475 c.669A>G synonymous_variant 0.19
rpoB 760481 c.675G>C synonymous_variant 0.19
rpoB 760484 c.678A>G synonymous_variant 0.19
rpoB 760487 c.681G>C synonymous_variant 0.2
rpoB 760508 c.702G>C synonymous_variant 0.22
rpoB 760511 c.705G>C synonymous_variant 0.21
rpoB 760514 c.708C>T synonymous_variant 0.22
rpoB 760522 p.Ser239Asn missense_variant 0.23
rpoB 760532 c.726T>C synonymous_variant 0.19
rpoB 760533 p.Val243His missense_variant 0.19
rpoB 760547 c.741G>C synonymous_variant 0.21
rpoB 760591 p.Val262Ala missense_variant 0.21
rpoB 760598 c.792C>G synonymous_variant 0.21
rpoB 760611 c.805T>C synonymous_variant 0.21
rpoB 760646 c.840C>G synonymous_variant 0.27
rpoB 760655 c.849A>G synonymous_variant 0.24
rpoB 760661 c.855A>C synonymous_variant 0.25
rpoB 760670 c.864G>C synonymous_variant 0.25
rpoB 760674 c.868T>C synonymous_variant 0.24
rpoB 760679 c.873A>G synonymous_variant 0.22
rpoB 760683 c.877T>C synonymous_variant 0.22
rpoB 760703 c.897C>T synonymous_variant 0.22
rpoB 760919 c.1113C>G synonymous_variant 0.23
rpoB 760925 c.1119T>C synonymous_variant 0.22
rpoB 760928 c.1122G>C synonymous_variant 0.25
rpoB 760938 c.1132C>T synonymous_variant 0.31
rpoB 760946 c.1140A>G synonymous_variant 0.31
rpoB 760970 c.1164G>C synonymous_variant 0.33
rpoB 760985 c.1179G>C synonymous_variant 0.29
rpoB 760991 c.1185G>C synonymous_variant 0.28
rpoB 761027 c.1221A>G synonymous_variant 0.29
rpoB 761037 c.1231T>C synonymous_variant 0.29
rpoB 761096 c.1290G>C synonymous_variant 0.22
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.22
rpoB 761102 c.1296A>G synonymous_variant 0.23
rpoB 761132 c.1326G>T synonymous_variant 0.26
rpoB 761133 c.1327T>C synonymous_variant 0.25
rpoB 761150 c.1344A>G synonymous_variant 0.25
rpoB 761153 c.1347G>C synonymous_variant 0.25
rpoB 761165 c.1359G>C synonymous_variant 0.28
rpoB 761168 c.1362C>G synonymous_variant 0.29
rpoB 761171 c.1365C>T synonymous_variant 0.29
rpoB 761180 c.1374A>C synonymous_variant 0.3
rpoB 761183 c.1377T>C synonymous_variant 0.31
rpoB 761189 c.1383T>G synonymous_variant 0.31
rpoB 761207 c.1401C>T synonymous_variant 0.31
rpoB 761219 c.1413G>C synonymous_variant 0.25
rpoB 761220 c.1414_1416delTCGinsAGC synonymous_variant 0.25
rpoB 761249 c.1443A>G synonymous_variant 0.29
rpoB 761255 c.1449T>G synonymous_variant 0.28
rpoB 761261 c.1455G>T synonymous_variant 0.27
rpoB 761264 c.1458C>G synonymous_variant 0.26
rpoB 761327 c.1521A>G synonymous_variant 0.17
rpoB 761492 c.1686G>C synonymous_variant 0.16
rpoB 761510 c.1704T>C synonymous_variant 0.17
rpoB 761531 c.1725C>T synonymous_variant 0.21
rpoB 761537 c.1731C>G synonymous_variant 0.21
rpoB 761564 c.1758G>C synonymous_variant 0.29
rpoB 761570 c.1764T>C synonymous_variant 0.29
rpoB 761579 c.1773G>C synonymous_variant 0.27
rpoB 761606 c.1800C>G synonymous_variant 0.27
rpoB 761612 c.1806G>C synonymous_variant 0.26
rpoB 761615 c.1809A>C synonymous_variant 0.25
rpoB 761636 c.1830G>C synonymous_variant 0.22
rpoB 761645 c.1839C>G synonymous_variant 0.21
rpoB 761648 c.1842T>C synonymous_variant 0.21
rpoB 761657 c.1851C>G synonymous_variant 0.22
rpoB 761675 c.1869G>C synonymous_variant 0.22
rpoB 761682 c.1876C>T synonymous_variant 0.21
rpoB 761690 c.1884G>C synonymous_variant 0.19
rpoB 761765 c.1959T>C synonymous_variant 0.21
rpoB 761772 p.His656Ala missense_variant 0.21
rpoB 761778 p.Asn658Asp missense_variant 0.22
rpoB 761791 p.Arg662His missense_variant 0.16
rpoB 761813 c.2007T>C synonymous_variant 0.21
rpoB 761815 p.Ala670Glu missense_variant 0.21
rpoB 761834 c.2028T>G synonymous_variant 0.21
rpoB 761848 p.Cys681Ser missense_variant 0.2
rpoB 761852 c.2046C>G synonymous_variant 0.21
rpoB 761867 c.2061C>G synonymous_variant 0.21
rpoB 761873 c.2067A>G synonymous_variant 0.23
rpoB 761879 c.2073G>A synonymous_variant 0.23
rpoB 761885 c.2079T>C synonymous_variant 0.22
rpoB 761891 c.2085G>C synonymous_variant 0.24
rpoB 761906 c.2100C>G synonymous_variant 0.23
rpoB 761909 c.2103T>C synonymous_variant 0.21
rpoB 761912 c.2106T>C synonymous_variant 0.21
rpoB 761915 p.Asp703Glu missense_variant 0.21
rpoB 761916 p.Asp704Asn missense_variant 0.21
rpoB 761921 c.2115C>T synonymous_variant 0.21
rpoB 761954 c.2148C>G synonymous_variant 0.22
rpoB 762008 c.2202C>A synonymous_variant 0.25
rpoB 762014 c.2208C>T synonymous_variant 0.26
rpoB 762017 c.2211A>G synonymous_variant 0.26
rpoB 762053 c.2247T>C synonymous_variant 0.21
rpoB 762062 c.2256T>C synonymous_variant 0.2
rpoB 762065 c.2259T>C synonymous_variant 0.21
rpoB 762083 c.2277T>C synonymous_variant 0.2
rpoB 762086 c.2280G>C synonymous_variant 0.2
rpoB 762101 c.2295C>G synonymous_variant 0.21
rpoB 762114 p.Ile770Val missense_variant 0.22
rpoB 762140 c.2334G>C synonymous_variant 0.19
rpoB 762143 c.2337T>C synonymous_variant 0.17
rpoB 762149 c.2343G>C synonymous_variant 0.19
rpoB 762158 c.2352G>C synonymous_variant 0.22
rpoB 762167 c.2361T>C synonymous_variant 0.21
rpoB 762176 c.2370T>G synonymous_variant 0.21
rpoB 762185 c.2379G>C synonymous_variant 0.21
rpoB 762254 c.2448T>G synonymous_variant 0.23
rpoB 762257 c.2451C>G synonymous_variant 0.2
rpoB 762284 c.2478G>C synonymous_variant 0.23
rpoB 762293 c.2487T>C synonymous_variant 0.23
rpoB 762317 c.2511A>G synonymous_variant 0.26
rpoB 762323 c.2517C>G synonymous_variant 0.26
rpoB 762329 c.2523G>C synonymous_variant 0.25
rpoB 762338 c.2532T>C synonymous_variant 0.25
rpoB 762347 c.2541T>C synonymous_variant 0.24
rpoB 762353 c.2547C>T synonymous_variant 0.25
rpoB 762362 p.Glu852Asp missense_variant 0.23
rpoB 762369 c.2563T>C synonymous_variant 0.25
rpoC 762395 c.-975G>C upstream_gene_variant 0.21
rpoC 762398 c.-972T>C upstream_gene_variant 0.17
rpoC 762410 c.-960T>C upstream_gene_variant 0.17
rpoC 762416 c.-954A>G upstream_gene_variant 0.17
rpoC 762434 c.-936T>C upstream_gene_variant 0.19
rpoC 762443 c.-927G>C upstream_gene_variant 0.19
rpoB 762489 p.Val895Gln missense_variant 0.23
rpoC 762509 c.-861T>G upstream_gene_variant 0.24
rpoB 762510 p.Ala902Pro missense_variant 0.24
rpoC 762533 c.-837T>C upstream_gene_variant 0.21
rpoC 762536 c.-834T>C upstream_gene_variant 0.2
rpoC 762537 c.-833T>C upstream_gene_variant 0.2
rpoC 762545 c.-825C>G upstream_gene_variant 0.19
rpoC 762581 c.-789T>C upstream_gene_variant 0.16
rpoC 762728 c.-642C>G upstream_gene_variant 0.23
rpoB 762730 p.Gln975Arg missense_variant 0.24
rpoC 762749 c.-621C>G upstream_gene_variant 0.27
rpoC 762753 c.-617T>C upstream_gene_variant 0.19
rpoB 762759 p.Cys985Ala missense_variant 0.21
rpoC 762776 c.-594C>G upstream_gene_variant 0.22
rpoB 762780 p.Gly992Asn missense_variant 0.21
rpoB 762785 p.Asp993Glu missense_variant 0.24
rpoB 762789 p.Leu995Met missense_variant 0.25
rpoC 762794 c.-576C>G upstream_gene_variant 0.28
rpoB 762799 p.Ala998Gly missense_variant 0.3
rpoC 762812 c.-558C>G upstream_gene_variant 0.33
rpoB 762813 p.Met1003Val missense_variant 0.32
rpoC 762827 c.-543G>C upstream_gene_variant 0.28
rpoC 762830 c.-540C>G upstream_gene_variant 0.27
rpoC 762831 c.-539_-538delAGinsTC upstream_gene_variant 0.27
rpoC 762836 c.-534C>T upstream_gene_variant 0.27
rpoC 762857 c.-513C>G upstream_gene_variant 0.33
rpoC 762863 c.-507T>C upstream_gene_variant 0.31
rpoC 762929 c.-441G>T upstream_gene_variant 0.25
rpoC 762962 c.-408C>T upstream_gene_variant 0.23
rpoC 762983 c.-387C>T upstream_gene_variant 0.26
rpoC 762995 c.-375G>T upstream_gene_variant 0.27
rpoC 763028 c.-342T>C upstream_gene_variant 0.33
rpoC 763031 c.-339T>C upstream_gene_variant 0.34
rpoC 763034 c.-336C>G upstream_gene_variant 0.32
rpoC 763040 c.-330C>G upstream_gene_variant 0.38
rpoC 763070 c.-300T>C upstream_gene_variant 0.41
rpoC 763085 c.-285C>G upstream_gene_variant 0.37
rpoC 763158 c.-212C>T upstream_gene_variant 0.29
rpoC 763166 c.-204A>G upstream_gene_variant 0.25
rpoC 763169 c.-201A>G upstream_gene_variant 0.24
rpoC 763184 c.-186C>T upstream_gene_variant 0.22
rpoC 763187 c.-183C>G upstream_gene_variant 0.22
rpoC 763402 c.33C>T synonymous_variant 0.22
rpoC 763411 c.42T>G synonymous_variant 0.23
rpoC 763414 c.45T>C synonymous_variant 0.23
rpoC 763441 c.72C>T synonymous_variant 0.25
rpoC 763444 c.75T>C synonymous_variant 0.24
rpoC 763456 c.87A>G synonymous_variant 0.28
rpoC 763486 c.117T>G synonymous_variant 0.27
rpoC 763507 c.138G>C synonymous_variant 0.31
rpoC 763528 c.159G>A synonymous_variant 0.26
rpoC 763546 c.177A>G synonymous_variant 0.22
rpoC 763570 c.201G>C synonymous_variant 0.24
rpoC 763573 c.204G>C synonymous_variant 0.24
rpoC 763594 c.225C>T synonymous_variant 0.28
rpoC 763633 c.264T>C synonymous_variant 0.22
rpoC 763636 c.267T>C synonymous_variant 0.22
rpoC 763660 c.291T>G synonymous_variant 0.18
rpoC 763675 c.306C>G synonymous_variant 0.16
rpoC 763723 c.354G>C synonymous_variant 0.16
rpoC 763729 c.360G>C synonymous_variant 0.17
rpoC 763741 c.372C>T synonymous_variant 0.18
rpoC 763744 c.375G>C synonymous_variant 0.18
rpoC 763765 c.396T>G synonymous_variant 0.23
rpoC 763768 c.399C>G synonymous_variant 0.22
rpoC 763780 c.411C>G synonymous_variant 0.24
rpoC 763792 p.Glu141Asp missense_variant 0.27
rpoC 763801 c.432C>G synonymous_variant 0.23
rpoC 763807 c.438T>C synonymous_variant 0.24
rpoC 763813 c.444C>G synonymous_variant 0.24
rpoC 763835 p.Ala156Thr missense_variant 0.31
rpoC 763855 c.486C>T synonymous_variant 0.34
rpoC 763858 c.489A>G synonymous_variant 0.34
rpoC 763872 p.Gly168Ala missense_variant 0.36
rpoC 763876 p.Glu169Asp missense_variant 0.36
rpoC 763879 c.510A>G synonymous_variant 0.33
rpoC 763888 c.519G>C synonymous_variant 0.33
rpoC 763894 c.525A>G synonymous_variant 0.29
rpoC 764083 c.714A>G synonymous_variant 0.22
rpoC 764098 c.729A>G synonymous_variant 0.23
rpoC 764131 c.762T>C synonymous_variant 0.3
rpoC 764161 c.792G>C synonymous_variant 0.35
rpoC 764188 c.819A>G synonymous_variant 0.35
rpoC 764194 p.Glu275Asp missense_variant 0.36
rpoC 764195 p.Ser276Met missense_variant 0.36
rpoC 764206 c.837T>C synonymous_variant 0.36
rpoC 764255 c.886C>T synonymous_variant 0.24
rpoC 764266 c.897T>C synonymous_variant 0.22
rpoC 764269 c.900G>C synonymous_variant 0.21
rpoC 764272 c.903G>C synonymous_variant 0.2
rpoC 764278 c.909A>G synonymous_variant 0.22
rpoC 764359 c.990C>G synonymous_variant 0.27
rpoC 764365 c.996C>T synonymous_variant 0.21
rpoC 764380 c.1011G>C synonymous_variant 0.19
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.19
rpoC 764387 c.1018T>C synonymous_variant 0.2
rpoC 764405 c.1036A>C synonymous_variant 0.16
rpoC 764410 c.1041G>C synonymous_variant 0.19
rpoC 764428 c.1059G>C synonymous_variant 0.24
rpoC 764431 c.1062G>C synonymous_variant 0.23
rpoC 764434 c.1065A>G synonymous_variant 0.23
rpoC 764446 c.1077T>C synonymous_variant 0.21
rpoC 764449 c.1080G>C synonymous_variant 0.21
rpoC 764452 c.1083T>C synonymous_variant 0.21
rpoC 764458 c.1089G>C synonymous_variant 0.27
rpoC 764461 c.1092A>G synonymous_variant 0.28
rpoC 764497 c.1128A>G synonymous_variant 0.26
rpoC 764521 c.1152T>C synonymous_variant 0.22
rpoC 764533 c.1164C>G synonymous_variant 0.2
rpoC 764536 c.1167G>T synonymous_variant 0.2
rpoC 764539 c.1170C>G synonymous_variant 0.2
rpoC 764548 c.1179G>T synonymous_variant 0.21
rpoC 764566 c.1197C>G synonymous_variant 0.22
rpoC 764575 c.1206T>C synonymous_variant 0.21
rpoC 764581 c.1212T>C synonymous_variant 0.21
rpoC 764611 c.1242G>C synonymous_variant 0.26
rpoC 764626 c.1257C>T synonymous_variant 0.26
rpoC 764632 c.1263T>C synonymous_variant 0.27
rpoC 764650 c.1281G>C synonymous_variant 0.21
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.21
rpoC 764695 c.1326T>C synonymous_variant 0.25
rpoC 764749 c.1380G>C synonymous_variant 0.23
rpoC 764752 c.1383G>C synonymous_variant 0.24
rpoC 764764 c.1395T>C synonymous_variant 0.27
rpoC 764791 c.1422C>A synonymous_variant 0.22
rpoC 764803 c.1434C>G synonymous_variant 0.2
rpoC 764809 c.1440C>T synonymous_variant 0.2
rpoC 764815 c.1446A>G synonymous_variant 0.24
rpoC 764824 c.1455T>C synonymous_variant 0.21
rpoC 764827 c.1458G>C synonymous_variant 0.23
rpoC 764842 c.1473C>T synonymous_variant 0.23
rpoC 764858 c.1489T>C synonymous_variant 0.22
rpoC 764872 c.1503A>G synonymous_variant 0.18
rpoC 764875 c.1506C>G synonymous_variant 0.18
rpoC 764888 c.1519T>C synonymous_variant 0.2
rpoC 764893 c.1524T>C synonymous_variant 0.2
rpoC 764896 c.1527C>T synonymous_variant 0.19
rpoC 764911 c.1542A>G synonymous_variant 0.24
rpoC 764932 c.1563C>A synonymous_variant 0.27
rpoC 764939 c.1570C>T synonymous_variant 0.25
rpoC 764948 c.1579T>C synonymous_variant 0.23
rpoC 764962 c.1593G>C synonymous_variant 0.25
rpoC 764968 c.1599T>C synonymous_variant 0.25
rpoC 764983 c.1614T>C synonymous_variant 0.23
rpoC 765004 c.1635G>A synonymous_variant 0.21
rpoC 765007 c.1638T>G synonymous_variant 0.21
rpoC 765008 c.1639T>C synonymous_variant 0.21
rpoC 765019 c.1650A>G synonymous_variant 0.26
rpoC 765034 c.1665T>G synonymous_variant 0.23
rpoC 765040 c.1671T>C synonymous_variant 0.24
rpoC 765041 c.1672T>C synonymous_variant 0.24
rpoC 765047 c.1678T>C synonymous_variant 0.21
rpoC 765052 c.1683C>T synonymous_variant 0.22
rpoC 765367 c.1998C>G synonymous_variant 0.21
rpoC 765383 p.Met672Leu missense_variant 0.23
rpoC 765405 p.Leu679His missense_variant 0.23
rpoC 765409 c.2040T>C synonymous_variant 0.23
rpoC 765412 c.2043T>C synonymous_variant 0.23
rpoC 765421 c.2052C>G synonymous_variant 0.26
rpoC 765478 c.2109T>C synonymous_variant 0.28
rpoC 765499 c.2130C>G synonymous_variant 0.27
rpoC 765508 c.2139C>G synonymous_variant 0.27
rpoC 765547 c.2178C>T synonymous_variant 0.21
rpoC 765550 c.2181C>T synonymous_variant 0.2
rpoC 765553 c.2184C>T synonymous_variant 0.19
rpoC 765556 c.2187G>C synonymous_variant 0.2
rpoC 765559 c.2190G>C synonymous_variant 0.2
rpoC 765578 c.2209C>T synonymous_variant 0.25
rpoC 765583 c.2214G>T synonymous_variant 0.26
rpoC 765613 p.His748Gln missense_variant 0.21
rpoC 765625 c.2256C>G synonymous_variant 0.21
rpoC 765628 c.2259G>C synonymous_variant 0.2
rpoC 765631 p.Asp754Glu missense_variant 0.2
rpoC 765655 c.2286T>C synonymous_variant 0.19
rpoC 765700 c.2331T>C synonymous_variant 0.18
rpoC 765712 c.2343C>G synonymous_variant 0.17
rpoC 765752 p.Asp795Ser missense_variant 0.18
rpoC 765772 c.2403C>G synonymous_variant 0.26
rpoC 765784 c.2415C>G synonymous_variant 0.27
rpoC 765787 c.2418C>T synonymous_variant 0.27
rpoC 765793 c.2424C>G synonymous_variant 0.27
rpoC 765796 c.2427C>T synonymous_variant 0.25
rpoC 765811 c.2442T>C synonymous_variant 0.24
rpoC 765814 c.2445A>G synonymous_variant 0.25
rpoC 765826 c.2457T>C synonymous_variant 0.23
rpoC 765835 c.2466C>T synonymous_variant 0.26
rpoC 765850 c.2481G>C synonymous_variant 0.25
rpoC 765883 c.2514C>G synonymous_variant 0.24
rpoC 765886 c.2517C>G synonymous_variant 0.24
rpoC 765892 c.2523T>C synonymous_variant 0.24
rpoC 765928 c.2559C>G synonymous_variant 0.25
rpoC 765937 c.2568T>C synonymous_variant 0.28
rpoC 765947 c.2578T>C synonymous_variant 0.28
rpoC 765967 c.2598C>T synonymous_variant 0.26
rpoC 765979 c.2610C>G synonymous_variant 0.24
rpoC 765982 c.2613C>T synonymous_variant 0.23
rpoC 765985 c.2616C>T synonymous_variant 0.23
rpoC 765986 c.2617C>T synonymous_variant 0.23
rpoC 765994 c.2625A>T synonymous_variant 0.23
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.19
rpoC 766021 c.2652G>C synonymous_variant 0.22
rpoC 766027 c.2658G>C synonymous_variant 0.25
rpoC 766043 p.Gln892Glu missense_variant 0.23
rpoC 766061 p.Val898Ile missense_variant 0.2
rpoC 766083 p.Ala905Glu missense_variant 0.15
rpoC 766085 p.Pro906Ala missense_variant 1.0
rpoC 766327 c.2958C>A synonymous_variant 0.15
rpoC 766345 c.2976T>C synonymous_variant 0.17
rpoC 766357 c.2988C>T synonymous_variant 0.16
rpoC 766375 c.3006C>G synonymous_variant 0.16
rpoC 766393 c.3024C>G synonymous_variant 0.16
rpoC 766426 c.3057C>T synonymous_variant 0.19
rpoC 766429 c.3060C>G synonymous_variant 0.19
rpoC 766447 c.3078T>C synonymous_variant 0.18
rpoC 766459 c.3090G>C synonymous_variant 0.19
rpoC 766483 c.3114G>C synonymous_variant 0.24
rpoC 766486 c.3117A>C synonymous_variant 0.25
rpoC 766492 c.3123T>C synonymous_variant 0.28
rpoC 766522 c.3153C>G synonymous_variant 0.25
rpoC 766528 c.3159T>A synonymous_variant 0.24
rpoC 766530 p.Arg1054Gln missense_variant 0.22
rpoC 766543 c.3174C>T synonymous_variant 0.22
rpoC 766570 c.3201T>C synonymous_variant 0.22
rpoC 766573 c.3204T>C synonymous_variant 0.22
rpoC 766583 p.Gly1072Ser missense_variant 0.23
rpoC 766594 c.3225G>C synonymous_variant 0.26
rpoC 766607 p.Ile1080Leu missense_variant 0.19
rpoC 766624 c.3255G>T synonymous_variant 0.18
rpoC 766630 c.3261G>T synonymous_variant 0.19
rpoC 766633 c.3264G>C synonymous_variant 0.21
rpoC 766645 c.3276A>G synonymous_variant 0.22
rpoC 766657 c.3288A>G synonymous_variant 0.26
rpoC 766666 c.3297C>G synonymous_variant 0.27
rpoC 766672 c.3303T>C synonymous_variant 0.27
rpoC 766726 c.3357T>C synonymous_variant 0.24
rpoC 766738 c.3369G>C synonymous_variant 0.23
rpoC 766765 c.3396A>C synonymous_variant 0.21
rpoC 766774 c.3405T>C synonymous_variant 0.23
rpoC 766780 c.3411G>A synonymous_variant 0.23
rpoC 766798 c.3429C>T synonymous_variant 0.21
rpoC 766804 c.3435A>G synonymous_variant 0.25
rpoC 766861 c.3492G>C synonymous_variant 0.24
rpoC 766864 c.3495G>C synonymous_variant 0.25
rpoC 766900 c.3531T>C synonymous_variant 0.31
rpoC 766933 c.3564A>G synonymous_variant 0.23
rpoC 766945 c.3576A>G synonymous_variant 0.2
rpoC 766963 c.3594T>C synonymous_variant 0.19
rpoC 766972 c.3603G>C synonymous_variant 0.19
rpoC 766981 c.3612T>G synonymous_variant 0.2
rpoC 766996 c.3627C>T synonymous_variant 0.19
rpoC 767059 c.3690T>G synonymous_variant 0.21
rpoC 767062 c.3693C>A synonymous_variant 0.21
rpoC 767065 c.3696G>C synonymous_variant 0.19
rpoC 767098 c.3729T>C synonymous_variant 0.31
rpoC 767119 c.3750A>G synonymous_variant 0.3
rpoC 767134 c.3765C>A synonymous_variant 0.31
rpoC 767158 c.3789T>C synonymous_variant 0.22
rpoC 767167 c.3798C>G synonymous_variant 0.18
rpoC 767181 p.Ala1271Glu missense_variant 0.15
rpoC 767206 c.3837C>G synonymous_variant 0.17
rpoC 767209 c.3840T>C synonymous_variant 0.17
rpoC 767221 c.3852C>G synonymous_variant 0.17
rpoC 767230 c.3861G>C synonymous_variant 0.16
rpoC 767233 c.3864T>C synonymous_variant 0.15
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775949 c.2532G>T synonymous_variant 0.16
mmpL5 775966 p.Ala839Ser missense_variant 0.16
mmpL5 775981 p.Leu834Met missense_variant 0.15
mmpL5 776002 p.Leu827Met missense_variant 0.14
mmpL5 776030 c.2451G>T synonymous_variant 0.14
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 0.16
rpsL 781664 c.105C>T synonymous_variant 0.15
rpsL 781682 c.123T>C synonymous_variant 0.2
rpsL 781715 c.156T>C synonymous_variant 0.2
rpsL 781718 c.159C>G synonymous_variant 0.2
rpsL 781728 c.169T>C synonymous_variant 0.19
rpsL 781736 c.177T>C synonymous_variant 0.2
rpsL 781751 c.192G>C synonymous_variant 0.21
rpsL 781754 c.195G>C synonymous_variant 0.21
rpsL 781760 c.201T>C synonymous_variant 0.2
rpsL 781763 c.204C>G synonymous_variant 0.2
rpsL 781811 c.252C>T synonymous_variant 0.23
rpsL 781817 c.258G>A synonymous_variant 0.24
rpsL 781820 c.261G>C synonymous_variant 0.23
rpsL 781832 c.273T>C synonymous_variant 0.25
rpsL 781835 c.276T>C synonymous_variant 0.25
rpsL 781838 c.279G>C synonymous_variant 0.27
rpsL 781841 c.282C>G synonymous_variant 0.26
rpsL 781865 c.306G>C synonymous_variant 0.27
rpsL 781868 c.309T>C synonymous_variant 0.26
rpsL 781871 c.312G>C synonymous_variant 0.27
rpsL 781877 c.318T>G synonymous_variant 0.26
rpsL 781892 c.333A>G synonymous_variant 0.25
rpsL 781898 c.339A>T synonymous_variant 0.23
rpsL 781916 c.357T>C synonymous_variant 0.24
rpsL 781929 p.Gly124Ser missense_variant 0.25
rplC 800645 c.-164C>G upstream_gene_variant 0.18
rplC 800648 c.-161A>T upstream_gene_variant 0.18
rplC 800693 c.-116A>C upstream_gene_variant 0.18
rplC 800703 c.-106T>C upstream_gene_variant 0.17
rplC 800720 c.-89T>C upstream_gene_variant 0.15
rplC 800723 c.-86C>G upstream_gene_variant 0.15
fbiC 1303534 p.Ser202Ala missense_variant 0.17
fbiC 1303542 c.612C>G synonymous_variant 0.16
fbiC 1303575 c.645G>C synonymous_variant 0.16
fbiC 1303584 c.654C>G synonymous_variant 0.19
fbiC 1303695 c.765T>C synonymous_variant 0.17
fbiC 1303704 c.774T>C synonymous_variant 0.2
fbiC 1303708 c.778T>C synonymous_variant 0.2
fbiC 1303731 c.801A>G synonymous_variant 0.2
fbiC 1303732 p.Ser268Thr missense_variant 0.2
fbiC 1303746 p.Asp272Glu missense_variant 0.19
fbiC 1303749 c.819G>C synonymous_variant 0.19
fbiC 1303752 c.822A>G synonymous_variant 0.19
fbiC 1303755 c.825T>C synonymous_variant 0.2
fbiC 1303788 c.858T>C synonymous_variant 0.19
fbiC 1303789 p.Ile287Val missense_variant 0.19
fbiC 1303818 c.888C>G synonymous_variant 0.24
fbiC 1304481 c.1551T>G synonymous_variant 0.21
fbiC 1304484 c.1554C>G synonymous_variant 0.23
fbiC 1304496 c.1566T>G synonymous_variant 0.23
fbiC 1304499 c.1569T>G synonymous_variant 0.24
fbiC 1304502 c.1572G>A synonymous_variant 0.24
fbiC 1304516 p.Ala529Val missense_variant 0.23
fbiC 1304520 c.1590A>C synonymous_variant 0.23
fbiC 1304526 c.1596T>G synonymous_variant 0.22
fbiC 1304532 c.1602G>T synonymous_variant 0.22
fbiC 1304533 c.1603T>C synonymous_variant 0.23
fbiC 1304544 c.1614T>C synonymous_variant 0.22
fbiC 1304545 p.Val539Thr missense_variant 0.22
fbiC 1304553 c.1623C>T synonymous_variant 0.22
fbiC 1304559 p.Glu543Asp missense_variant 0.2
fbiC 1304565 c.1635C>G synonymous_variant 0.19
fbiC 1304568 c.1638T>C synonymous_variant 0.19
fbiC 1304571 c.1641G>C synonymous_variant 0.19
fbiC 1304574 c.1644C>G synonymous_variant 0.19
fbiC 1304580 c.1650T>C synonymous_variant 0.21
fbiC 1304607 c.1677C>T synonymous_variant 0.15
fbiC 1304841 c.1911G>A synonymous_variant 0.17
fbiC 1304856 c.1926C>G synonymous_variant 0.2
fbiC 1304865 c.1935C>T synonymous_variant 0.22
fbiC 1304871 c.1941G>C synonymous_variant 0.25
fbiC 1304875 p.Ile649Val missense_variant 0.28
fbiC 1304893 p.Gly655Ser missense_variant 0.3
fbiC 1304916 c.1986T>C synonymous_variant 0.25
fbiC 1304928 c.1998T>C synonymous_variant 0.21
fbiC 1304931 c.2001C>G synonymous_variant 0.2
fbiC 1304937 c.2007G>C synonymous_variant 0.21
fbiC 1304940 c.2010A>G synonymous_variant 0.18
fbiC 1304955 c.2025G>A synonymous_variant 0.2
fbiC 1304958 c.2028T>G synonymous_variant 0.2
atpE 1460992 c.-53A>C upstream_gene_variant 1.0
atpE 1461089 c.45G>C synonymous_variant 0.15
atpE 1461097 p.Ala18Gly missense_variant 0.14
atpE 1461134 c.90C>T synonymous_variant 0.15
atpE 1461159 p.Val39Ile missense_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.18
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.2
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.31
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.41
rrs 1472527 n.683delT non_coding_transcript_exon_variant 0.2
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.17
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.25
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.25
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.21
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.2
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.21
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.23
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.25
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.25
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.15
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.16
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.15
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.16
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.36
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.36
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.38
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.43
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.39
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.56
rrl 1473408 n.-250C>T upstream_gene_variant 0.19
rrl 1473417 n.-241C>T upstream_gene_variant 0.2
rrl 1473420 n.-238A>G upstream_gene_variant 0.16
rrl 1473421 n.-237G>A upstream_gene_variant 0.16
rrl 1473569 n.-89A>T upstream_gene_variant 0.29
rrl 1473571 n.-87C>T upstream_gene_variant 0.29
rrl 1473600 n.-58A>G upstream_gene_variant 0.27
rrl 1473603 n.-55C>T upstream_gene_variant 0.25
rrl 1473610 n.-47delT upstream_gene_variant 0.25
rrl 1473613 n.-45G>A upstream_gene_variant 0.25
rrl 1473627 n.-31T>G upstream_gene_variant 0.27
rrl 1473628 n.-30_-29insTGAAA upstream_gene_variant 0.27
rrl 1473633 n.-25C>T upstream_gene_variant 0.25
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.5
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.56
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.56
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.63
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.93
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.82
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.75
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.67
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.67
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.75
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.67
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.67
rrl 1474018 n.361G>T non_coding_transcript_exon_variant 0.7
rrl 1474051 n.394T>C non_coding_transcript_exon_variant 0.89
rrl 1474056 n.399T>C non_coding_transcript_exon_variant 0.89
rrl 1474071 n.414G>A non_coding_transcript_exon_variant 0.67
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.5
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.5
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.42
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.31
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.17
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.33
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.25
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.5
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.5
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.4
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.5
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.6
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.6
rrl 1475273 n.1616T>G non_coding_transcript_exon_variant 0.43
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.5
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.5
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.33
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.33
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.46
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.46
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.56
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.5
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.45
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.56
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.42
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.25
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.25
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.29
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.4
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.33
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.38
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.36
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.69
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.43
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.43
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.36
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.33
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.33
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.19
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.19
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.28
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.46
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.46
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.49
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.42
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.27
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.27
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.26
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.26
rrl 1476716 n.3059A>T non_coding_transcript_exon_variant 0.19
inhA 1674231 c.30T>C synonymous_variant 0.15
inhA 1674486 c.285T>C synonymous_variant 0.2
inhA 1674489 c.288G>C synonymous_variant 0.18
inhA 1674537 c.336C>G synonymous_variant 0.22
inhA 1674542 p.Ala114Glu missense_variant 0.21
inhA 1674549 c.348G>C synonymous_variant 0.2
inhA 1674570 c.369G>C synonymous_variant 0.23
inhA 1674585 c.384T>C synonymous_variant 0.22
inhA 1674589 p.Met130Leu missense_variant 0.22
inhA 1674601 c.400C>T synonymous_variant 0.23
inhA 1674618 c.417C>T synonymous_variant 0.2
inhA 1674624 c.423A>C synonymous_variant 0.18
inhA 1674627 c.426T>G synonymous_variant 0.19
rpsA 1833589 c.48A>T synonymous_variant 0.16
rpsA 1833595 c.54T>C synonymous_variant 0.18
rpsA 1833604 c.63C>T synonymous_variant 0.21
rpsA 1833610 c.69C>T synonymous_variant 0.2
rpsA 1833658 c.117C>G synonymous_variant 0.21
rpsA 1833661 c.120A>G synonymous_variant 0.21
rpsA 1833664 c.123C>G synonymous_variant 0.22
rpsA 1833667 c.126C>G synonymous_variant 0.22
rpsA 1833721 c.180A>G synonymous_variant 0.28
rpsA 1833742 c.201A>G synonymous_variant 0.32
rpsA 1833745 c.204G>C synonymous_variant 0.35
rpsA 1833760 c.219C>T synonymous_variant 0.36
rpsA 1833771 p.Asn77Ser missense_variant 0.37
rpsA 1833793 c.252C>T synonymous_variant 0.35
rpsA 1833802 c.261A>G synonymous_variant 0.37
rpsA 1833811 c.270G>C synonymous_variant 0.38
rpsA 1833838 c.297G>A synonymous_variant 0.34
rpsA 1833841 c.300C>G synonymous_variant 0.35
rpsA 1833847 c.306C>G synonymous_variant 0.36
rpsA 1833856 c.315A>G synonymous_variant 0.37
rpsA 1833874 c.333T>C synonymous_variant 0.32
rpsA 1833904 p.Glu121Asp missense_variant 0.3
rpsA 1833928 c.387G>C synonymous_variant 0.33
rpsA 1833940 c.399C>G synonymous_variant 0.34
rpsA 1833970 c.429G>C synonymous_variant 0.3
rpsA 1833976 c.435C>T synonymous_variant 0.3
rpsA 1833979 c.438T>C synonymous_variant 0.29
rpsA 1833991 c.450C>G synonymous_variant 0.26
rpsA 1834000 c.459G>C synonymous_variant 0.25
rpsA 1834009 c.468C>T synonymous_variant 0.25
rpsA 1834015 c.474G>C synonymous_variant 0.24
rpsA 1834021 c.480C>T synonymous_variant 0.24
rpsA 1834030 c.489C>G synonymous_variant 0.21
rpsA 1834157 c.616T>C synonymous_variant 0.16
rpsA 1834169 p.Thr210Ala missense_variant 0.17
rpsA 1834177 c.636A>C synonymous_variant 0.19
rpsA 1834189 c.648G>C synonymous_variant 0.21
rpsA 1834195 c.654G>C synonymous_variant 0.21
rpsA 1834222 c.681T>C synonymous_variant 0.19
rpsA 1834231 c.690T>C synonymous_variant 0.18
rpsA 1834240 c.699T>C synonymous_variant 0.18
rpsA 1834249 c.708T>C synonymous_variant 0.21
rpsA 1834261 c.720A>G synonymous_variant 0.21
rpsA 1834264 c.723G>C synonymous_variant 0.23
rpsA 1834303 c.762T>C synonymous_variant 0.2
rpsA 1834306 c.765T>C synonymous_variant 0.21
rpsA 1834348 c.807T>C synonymous_variant 0.2
rpsA 1834366 c.825A>G synonymous_variant 0.22
rpsA 1834411 c.870T>G synonymous_variant 0.2
rpsA 1834417 c.876G>C synonymous_variant 0.19
rpsA 1834423 c.882G>C synonymous_variant 0.2
rpsA 1834435 c.894G>C synonymous_variant 0.21
rpsA 1834451 c.910T>C synonymous_variant 0.22
rpsA 1834456 c.915T>G synonymous_variant 0.22
rpsA 1834465 c.924T>C synonymous_variant 0.21
rpsA 1834468 c.927A>G synonymous_variant 0.23
rpsA 1834489 c.948T>C synonymous_variant 0.23
rpsA 1834513 c.972C>G synonymous_variant 0.22
rpsA 1834528 c.987T>C synonymous_variant 0.2
rpsA 1834546 c.1005T>C synonymous_variant 0.19
rpsA 1834609 c.1068T>C synonymous_variant 0.22
rpsA 1834633 c.1092A>G synonymous_variant 0.2
rpsA 1834639 c.1098T>C synonymous_variant 0.19
rpsA 1834690 c.1149T>C synonymous_variant 0.3
rpsA 1834732 c.1191T>C synonymous_variant 0.26
rpsA 1834738 c.1197A>G synonymous_variant 0.24
rpsA 1834753 c.1212T>C synonymous_variant 0.22
rpsA 1834765 c.1224A>G synonymous_variant 0.21
rpsA 1834780 c.1239A>G synonymous_variant 0.2
rpsA 1834786 c.1245A>G synonymous_variant 0.18
rpsA 1834789 c.1248T>C synonymous_variant 0.19
rpsA 1834792 c.1251G>T synonymous_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1917996 c.57A>G synonymous_variant 0.15
katG 2155632 c.480A>C synonymous_variant 0.18
katG 2155637 p.Leu159Ile missense_variant 0.2
katG 2155641 p.Lys157Asn missense_variant 0.22
katG 2155680 c.432G>C synonymous_variant 0.2
katG 2155691 c.421T>C synonymous_variant 0.21
katG 2155696 p.Ala139Val missense_variant 0.2
katG 2155704 c.408C>G synonymous_variant 0.2
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517950 c.-165C>G upstream_gene_variant 0.29
kasA 2517974 c.-141T>C upstream_gene_variant 0.24
kasA 2517989 c.-126T>C upstream_gene_variant 0.22
kasA 2517993 c.-122G>T upstream_gene_variant 0.23
kasA 2518019 c.-96A>G upstream_gene_variant 0.19
kasA 2518132 c.18C>T synonymous_variant 0.14
kasA 2518219 c.105T>A synonymous_variant 0.17
kasA 2518220 c.106C>T synonymous_variant 0.16
kasA 2518234 c.120G>A synonymous_variant 0.21
kasA 2518248 p.Ala45Val missense_variant 0.24
kasA 2518267 c.153C>A synonymous_variant 0.21
kasA 2518279 c.165T>C synonymous_variant 0.2
kasA 2518282 c.168A>G synonymous_variant 0.17
kasA 2518283 p.Ala57Pro missense_variant 0.17
kasA 2518534 c.420G>C synonymous_variant 0.18
kasA 2518561 c.447T>C synonymous_variant 0.19
kasA 2518574 p.Ile154Val missense_variant 0.24
kasA 2518579 c.465T>C synonymous_variant 0.25
kasA 2518588 c.474T>C synonymous_variant 0.33
kasA 2518594 c.480C>G synonymous_variant 0.33
kasA 2518597 c.483C>T synonymous_variant 0.33
kasA 2518609 p.Met165Ile missense_variant 0.3
kasA 2518627 c.513T>C synonymous_variant 0.25
kasA 2518639 c.525G>C synonymous_variant 0.27
kasA 2518657 c.543G>C synonymous_variant 0.24
kasA 2518663 c.549T>C synonymous_variant 0.3
kasA 2518672 c.558G>C synonymous_variant 0.28
kasA 2518678 c.564C>T synonymous_variant 0.26
kasA 2518702 c.588C>T synonymous_variant 0.21
kasA 2518705 c.591T>C synonymous_variant 0.25
kasA 2518711 c.597A>G synonymous_variant 0.25
kasA 2518714 c.600A>T synonymous_variant 0.26
kasA 2518765 c.651G>C synonymous_variant 0.28
kasA 2518768 c.654C>T synonymous_variant 0.28
kasA 2518783 c.669T>C synonymous_variant 0.24
kasA 2518786 c.672G>A synonymous_variant 0.23
kasA 2518789 c.675G>C synonymous_variant 0.23
kasA 2518792 c.678C>G synonymous_variant 0.22
kasA 2518796 c.682C>A synonymous_variant 0.21
kasA 2518825 c.711T>C synonymous_variant 0.18
kasA 2518847 p.Leu245Met missense_variant 0.15
kasA 2519137 c.1023T>G synonymous_variant 0.16
kasA 2519242 c.1128C>A synonymous_variant 0.16
kasA 2519263 c.1149C>T synonymous_variant 0.17
folC 2746333 c.1266C>G synonymous_variant 0.17
folC 2746351 p.Ala416Ser missense_variant 0.19
folC 2746360 c.1239T>C synonymous_variant 0.19
folC 2746366 c.1233G>A synonymous_variant 0.21
folC 2746393 c.1206C>G synonymous_variant 0.19
folC 2746402 c.1197T>C synonymous_variant 0.17
folC 2746405 p.Phe398Leu missense_variant 0.17
folC 2747433 c.166C>T synonymous_variant 0.16
folC 2747443 c.156G>A synonymous_variant 0.16
folC 2747454 c.145C>A synonymous_variant 0.15
pepQ 2859693 c.726C>T synonymous_variant 1.0
Rv2752c 3065979 c.213T>C synonymous_variant 0.18
Rv2752c 3065988 c.204A>G synonymous_variant 0.19
Rv2752c 3065993 p.Val67Ile missense_variant 0.18
Rv2752c 3066002 p.Met64Leu missense_variant 0.18
Rv2752c 3066009 c.183G>T synonymous_variant 0.16
Rv2752c 3066012 c.180C>A synonymous_variant 0.16
Rv2752c 3066071 c.121T>C synonymous_variant 0.16
Rv2752c 3066075 c.117A>G synonymous_variant 0.16
Rv2752c 3066081 c.111G>C synonymous_variant 0.16
thyX 3067304 c.642A>G synonymous_variant 0.22
thyX 3067316 c.630A>G synonymous_variant 0.21
thyX 3067340 c.606G>A synonymous_variant 0.2
thyX 3067349 c.597G>C synonymous_variant 0.21
thyX 3067355 c.591A>C synonymous_variant 0.19
thyX 3067364 c.582C>T synonymous_variant 0.22
thyX 3067412 c.534C>G synonymous_variant 0.18
thyX 3067418 c.528C>G synonymous_variant 0.16
thyX 3067430 c.516C>G synonymous_variant 0.18
thyX 3067433 c.513C>T synonymous_variant 0.18
thyX 3067439 c.507A>G synonymous_variant 0.18
thyX 3067442 c.504C>G synonymous_variant 0.18
thyX 3067445 c.501C>G synonymous_variant 0.18
thyX 3067472 c.474C>G synonymous_variant 0.17
thyX 3067475 c.471A>G synonymous_variant 0.17
thyX 3067478 c.468C>T synonymous_variant 0.18
thyX 3067493 c.453A>G synonymous_variant 0.23
thyX 3067500 p.Lys149Arg missense_variant 0.15
thyX 3067511 p.Glu145Asp missense_variant 0.19
thyX 3067676 c.270C>A synonymous_variant 0.14
thyX 3067680 p.Cys89Phe missense_variant 0.14
thyX 3067688 c.258G>C synonymous_variant 0.16
thyX 3067691 c.255C>T synonymous_variant 0.16
thyX 3067694 c.252G>C synonymous_variant 0.16
thyX 3067715 p.Ser77Asn missense_variant 0.17
thyX 3067718 c.228C>G synonymous_variant 0.16
thyX 3067721 c.225T>C synonymous_variant 0.16
thyX 3067733 c.213G>C synonymous_variant 0.19
thyX 3067742 c.204A>G synonymous_variant 0.19
thyX 3067745 c.201C>G synonymous_variant 0.2
thyX 3067761 p.Arg62Lys missense_variant 0.18
thyX 3067765 p.Leu61Ile missense_variant 0.18
thyX 3067781 c.165C>G synonymous_variant 0.18
thyX 3067796 c.150C>G synonymous_variant 0.17
thyX 3067811 c.135G>A synonymous_variant 0.16
thyA 3073845 c.627C>T synonymous_variant 0.16
thyA 3073863 c.609T>C synonymous_variant 0.22
thyA 3073866 c.606C>G synonymous_variant 0.21
thyA 3073874 p.Ile200Val missense_variant 0.22
thyA 3073878 c.594G>A synonymous_variant 0.22
thyA 3073881 c.591C>T synonymous_variant 0.22
thyA 3073892 c.580T>C synonymous_variant 0.22
thyA 3073893 c.579C>G synonymous_variant 0.23
thyA 3073925 c.547T>C synonymous_variant 0.23
thyA 3073929 c.543T>C synonymous_variant 0.23
thyA 3073947 c.525G>C synonymous_variant 0.21
thyA 3073956 c.516G>C synonymous_variant 0.21
thyA 3073977 c.495A>G synonymous_variant 0.21
thyA 3073980 c.492C>T synonymous_variant 0.18
thyA 3073983 c.489C>G synonymous_variant 0.18
thyA 3073989 c.483T>C synonymous_variant 0.21
thyA 3073995 c.477G>C synonymous_variant 0.23
thyA 3074004 c.468T>C synonymous_variant 0.25
thyA 3074007 c.465C>T synonymous_variant 0.25
thyA 3074010 c.462C>G synonymous_variant 0.25
thyA 3074031 c.441T>C synonymous_variant 0.19
thyA 3074037 c.435C>G synonymous_variant 0.21
thyA 3074053 p.Arg140Gln missense_variant 0.16
thyA 3074056 p.Glu139Pro missense_variant 0.16
thyA 3074061 c.411A>G synonymous_variant 0.17
thyA 3074064 c.408C>G synonymous_variant 0.19
ald 3087714 p.Ala299Ser missense_variant 0.16
ald 3087726 p.Ala303Thr missense_variant 0.15
ald 3087750 p.Tyr311Val missense_variant 0.18
ald 3087779 c.960T>C synonymous_variant 0.2
Rv3083 3448497 c.-7T>A upstream_gene_variant 1.0
fprA 3474899 p.Gly298Asp missense_variant 0.16
fprA 3474902 p.Ser299Asn missense_variant 0.17
fprA 3474909 c.903A>G synonymous_variant 0.17
fprA 3474913 p.Ala303Ser missense_variant 0.17
fprA 3474948 c.942A>C synonymous_variant 0.23
fprA 3474950 p.Ala315Val missense_variant 0.23
fprA 3474960 c.954C>G synonymous_variant 0.22
fprA 3474963 c.957G>A synonymous_variant 0.23
fbiB 3641235 c.-300G>C upstream_gene_variant 0.18
fbiB 3641244 c.-291G>C upstream_gene_variant 0.18
fbiA 3641245 p.Glu235Ser missense_variant 0.18
fbiB 3641250 c.-285A>G upstream_gene_variant 0.19
fbiB 3641256 c.-279A>C upstream_gene_variant 0.2
alr 3840764 c.657G>C synonymous_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 0.21
rpoA 3877656 c.852T>C synonymous_variant 0.19
rpoA 3877668 c.840A>G synonymous_variant 0.2
rpoA 3877677 p.Ala277Ser missense_variant 0.19
rpoA 3877686 c.822A>G synonymous_variant 0.18
rpoA 3877692 c.816G>C synonymous_variant 0.19
rpoA 3877704 c.804G>C synonymous_variant 0.2
rpoA 3877728 c.780C>G synonymous_variant 0.16
rpoA 3877740 c.768G>T synonymous_variant 0.23
rpoA 3877743 c.765T>C synonymous_variant 0.21
rpoA 3877764 c.744C>G synonymous_variant 0.19
rpoA 3877770 c.738A>G synonymous_variant 0.19
rpoA 3877773 c.735G>C synonymous_variant 0.2
rpoA 3877776 c.732T>C synonymous_variant 0.2
rpoA 3877782 c.726T>C synonymous_variant 0.21
rpoA 3877797 c.711G>A synonymous_variant 0.21
rpoA 3877818 c.690A>G synonymous_variant 0.25
rpoA 3877839 c.669G>C synonymous_variant 0.24
rpoA 3877857 c.651G>A synonymous_variant 0.23
rpoA 3877866 c.642G>C synonymous_variant 0.2
rpoA 3877875 c.633T>C synonymous_variant 0.21
rpoA 3877899 p.Ser203Thr missense_variant 0.19
rpoA 3877905 c.603A>G synonymous_variant 0.17
rpoA 3877908 c.600T>C synonymous_variant 0.17
rpoA 3877920 c.588G>C synonymous_variant 0.17
rpoA 3877962 c.546G>T synonymous_variant 0.16
rpoA 3877968 c.540C>G synonymous_variant 0.16
rpoA 3877974 c.534G>C synonymous_variant 0.16
rpoA 3878055 c.453A>G synonymous_variant 0.2
rpoA 3878067 c.441C>G synonymous_variant 0.2
rpoA 3878070 c.438T>C synonymous_variant 0.21
rpoA 3878103 c.405A>G synonymous_variant 0.22
rpoA 3878106 c.402G>C synonymous_variant 0.22
rpoA 3878118 c.390T>C synonymous_variant 0.22
rpoA 3878130 c.378C>G synonymous_variant 0.23
rpoA 3878142 p.Gly122Glu missense_variant 0.21
rpoA 3878217 c.291A>G synonymous_variant 0.16
rpoA 3878256 c.252G>C synonymous_variant 0.16
rpoA 3878262 p.Ser82Gly missense_variant 0.16
rpoA 3878271 c.237T>C synonymous_variant 0.17
rpoA 3878284 p.Glu75Ala missense_variant 0.17
rpoA 3878292 c.216T>C synonymous_variant 0.17
rpoA 3878298 c.210A>G synonymous_variant 0.17
rpoA 3878301 c.207C>G synonymous_variant 0.17
rpoA 3878309 p.Pro67Ala missense_variant 0.15
rpoA 3878310 c.198G>C synonymous_variant 0.15
rpoA 3878313 c.195G>C synonymous_variant 0.16
rpoA 3878322 c.186A>G synonymous_variant 0.17
rpoA 3878331 c.177A>G synonymous_variant 0.17
rpoA 3878334 c.174T>C synonymous_variant 0.17
rpoA 3878337 c.171T>C synonymous_variant 0.19
rpoA 3878364 c.144A>C synonymous_variant 0.25
rpoA 3878385 c.123C>G synonymous_variant 0.28
rpoA 3878388 c.120C>G synonymous_variant 0.27
rpoA 3878391 c.117T>C synonymous_variant 0.26
rpoA 3878415 c.93C>T synonymous_variant 0.21
rpoA 3878424 c.84G>C synonymous_variant 0.2
rpoA 3878430 c.78G>C synonymous_variant 0.19
rpoA 3878433 c.75G>C synonymous_variant 0.19
rpoA 3878436 c.72A>G synonymous_variant 0.2
rpoA 3878442 c.66G>C synonymous_variant 0.19
rpoA 3878451 c.57C>G synonymous_variant 0.2
rpoA 3878454 c.54A>C synonymous_variant 0.2
rpoA 3878469 c.39C>G synonymous_variant 0.2
rpoA 3878472 p.Asp12Glu missense_variant 0.19
rpoA 3878478 c.30C>G synonymous_variant 0.18
rpoA 3878484 c.24C>A synonymous_variant 0.15
rpoA 3878490 c.18C>A synonymous_variant 0.14
rpoA 3878637 c.-131delC upstream_gene_variant 0.25
ddn 3986645 c.-199G>A upstream_gene_variant 0.22
ddn 3986648 c.-196C>G upstream_gene_variant 0.19
ddn 3986667 c.-177_-176delCTinsAC upstream_gene_variant 0.17
clpC1 4038433 c.2272C>T synonymous_variant 0.17
clpC1 4038456 p.Val750Glu missense_variant 0.15
clpC1 4038461 c.2244G>T synonymous_variant 0.17
clpC1 4038470 c.2235G>A synonymous_variant 0.16
clpC1 4038475 p.Ser744Gly missense_variant 0.15
clpC1 4038486 p.Gly740Thr missense_variant 0.18
clpC1 4038497 c.2208C>T synonymous_variant 0.21
clpC1 4038530 p.Glu725Asp missense_variant 0.21
clpC1 4038533 p.Arg724Lys missense_variant 0.22
clpC1 4038596 c.2109A>G synonymous_variant 0.18
clpC1 4038812 c.1893T>C synonymous_variant 0.19
clpC1 4038878 c.1827A>G synonymous_variant 0.22
clpC1 4038890 c.1815G>A synonymous_variant 0.33
clpC1 4038914 c.1791G>C synonymous_variant 0.29
clpC1 4038917 c.1788C>T synonymous_variant 0.3
clpC1 4038923 c.1782A>G synonymous_variant 0.3
clpC1 4038953 c.1752A>G synonymous_variant 0.24
clpC1 4038956 c.1749T>C synonymous_variant 0.23
clpC1 4038965 c.1740T>C synonymous_variant 0.25
clpC1 4038971 c.1734T>C synonymous_variant 0.23
clpC1 4038974 c.1731T>C synonymous_variant 0.24
clpC1 4038989 c.1716T>C synonymous_variant 0.27
clpC1 4038997 c.1708T>C synonymous_variant 0.25
clpC1 4039022 c.1683A>G synonymous_variant 0.27
clpC1 4039031 c.1674T>G synonymous_variant 0.25
clpC1 4039046 c.1659C>G synonymous_variant 0.26
clpC1 4039064 c.1641C>T synonymous_variant 0.25
clpC1 4039085 c.1620A>G synonymous_variant 0.26
clpC1 4039090 c.1615C>T synonymous_variant 0.24
clpC1 4039097 c.1608G>C synonymous_variant 0.23
clpC1 4039106 c.1599G>C synonymous_variant 0.25
clpC1 4039112 c.1593C>G synonymous_variant 0.25
clpC1 4039121 c.1584T>C synonymous_variant 0.21
clpC1 4039124 c.1581C>G synonymous_variant 0.19
clpC1 4039142 c.1563A>G synonymous_variant 0.18
clpC1 4039169 p.Glu512Asp missense_variant 0.17
clpC1 4039172 c.1533A>G synonymous_variant 0.18
clpC1 4039178 c.1527G>C synonymous_variant 0.19
clpC1 4039183 c.1522T>C synonymous_variant 0.18
clpC1 4039186 c.1519C>T synonymous_variant 0.18
clpC1 4039208 c.1497C>G synonymous_variant 0.17
clpC1 4039274 c.1431G>C synonymous_variant 0.16
clpC1 4039277 c.1428C>T synonymous_variant 0.16
clpC1 4039286 c.1419T>C synonymous_variant 0.16
clpC1 4039295 c.1410A>G synonymous_variant 0.17
clpC1 4039313 c.1392C>T synonymous_variant 0.16
clpC1 4039337 p.Thr456Gln missense_variant 0.15
clpC1 4039454 c.1251A>G synonymous_variant 0.17
clpC1 4039457 c.1248C>T synonymous_variant 0.17
clpC1 4039463 c.1242C>G synonymous_variant 0.18
clpC1 4039466 c.1239T>C synonymous_variant 0.17
clpC1 4039469 c.1236T>C synonymous_variant 0.19
clpC1 4039481 c.1224T>G synonymous_variant 0.22
clpC1 4039517 c.1188C>G synonymous_variant 0.23
clpC1 4039541 c.1164C>T synonymous_variant 0.25
clpC1 4039556 c.1149G>C synonymous_variant 0.26
clpC1 4039570 p.Met379Leu missense_variant 0.25
clpC1 4039574 p.Ala377Ser missense_variant 0.26
clpC1 4039577 c.1128T>C synonymous_variant 0.27
clpC1 4039601 c.1104G>A synonymous_variant 0.25
clpC1 4039610 c.1095G>C synonymous_variant 0.26
clpC1 4039622 c.1083C>T synonymous_variant 0.26
clpC1 4039661 c.1044T>C synonymous_variant 0.26
clpC1 4039682 c.1023C>G synonymous_variant 0.27
clpC1 4039724 c.981A>G synonymous_variant 0.27
clpC1 4039748 c.957G>C synonymous_variant 0.22
clpC1 4039751 c.954A>G synonymous_variant 0.19
clpC1 4039757 c.948A>G synonymous_variant 0.19
clpC1 4039760 c.945T>C synonymous_variant 0.19
clpC1 4039766 c.939T>C synonymous_variant 0.2
clpC1 4039769 c.936C>G synonymous_variant 0.21
clpC1 4039775 c.930G>C synonymous_variant 0.21
clpC1 4039778 c.927A>G synonymous_variant 0.2
clpC1 4039781 c.924G>C synonymous_variant 0.2
clpC1 4039790 c.915C>G synonymous_variant 0.17
clpC1 4039817 c.888A>T synonymous_variant 0.19
clpC1 4039820 c.885T>C synonymous_variant 0.19
clpC1 4039823 c.882T>G synonymous_variant 0.19
clpC1 4039831 c.874T>C synonymous_variant 0.17
clpC1 4039832 c.873C>G synonymous_variant 0.16
clpC1 4039850 c.855T>C synonymous_variant 0.17
clpC1 4039865 c.840T>C synonymous_variant 0.2
clpC1 4039898 c.807C>G synonymous_variant 0.21
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.17
clpC1 4039931 c.774T>C synonymous_variant 0.17
clpC1 4039946 c.759A>C synonymous_variant 0.17
clpC1 4039952 c.753T>C synonymous_variant 0.16
clpC1 4039957 c.748C>T synonymous_variant 0.16
clpC1 4039979 c.726C>G synonymous_variant 0.17
clpC1 4039988 c.717C>G synonymous_variant 0.2
clpC1 4039996 p.Glu237Gln missense_variant 0.19
clpC1 4040021 c.684A>C synonymous_variant 0.18
clpC1 4040027 c.678C>G synonymous_variant 0.19
clpC1 4040030 c.675C>G synonymous_variant 0.19
clpC1 4040036 c.669C>G synonymous_variant 0.22
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.22
clpC1 4040093 c.612C>G synonymous_variant 0.2
clpC1 4040096 c.609G>C synonymous_variant 0.18
clpC1 4040108 c.597G>C synonymous_variant 0.17
clpC1 4040126 c.579C>G synonymous_variant 0.17
clpC1 4040129 c.576C>T synonymous_variant 0.18
embC 4241050 c.1188T>G synonymous_variant 0.17
embC 4241053 c.1191G>T synonymous_variant 0.15
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4245137 c.1905T>C synonymous_variant 0.2
embA 4245149 c.1917C>G synonymous_variant 0.21
embA 4245158 c.1926C>G synonymous_variant 0.21
embA 4245182 c.1950T>C synonymous_variant 0.22
embA 4245183 c.1951C>T synonymous_variant 0.22
embA 4245194 c.1962G>C synonymous_variant 0.19
embB 4247389 c.876C>G synonymous_variant 0.15
embB 4247395 c.882C>G synonymous_variant 0.16
embB 4247401 c.888T>C synonymous_variant 0.17
embB 4247407 c.894G>C synonymous_variant 0.17
embB 4247497 c.984T>C synonymous_variant 0.19
embB 4247512 c.999T>C synonymous_variant 0.18
embB 4247528 c.1015C>T synonymous_variant 0.17
embB 4247608 c.1095G>C synonymous_variant 0.16
embB 4247887 c.1374C>T synonymous_variant 0.15
embB 4247899 p.Met462Ile missense_variant 0.17
embB 4247905 c.1392G>C synonymous_variant 0.18
embB 4247909 c.1396T>C synonymous_variant 0.18
embB 4247914 c.1401G>C synonymous_variant 0.2
embB 4247951 p.Ser480Ala missense_variant 0.16
embB 4247974 c.1461C>G synonymous_variant 0.16
embB 4248001 c.1488C>T synonymous_variant 0.17
embB 4248007 c.1494C>G synonymous_variant 0.16
embB 4248041 p.Ala510Thr missense_variant 0.15
embB 4248199 c.1686A>G synonymous_variant 0.18
embB 4248205 c.1692C>G synonymous_variant 0.18
embB 4248206 p.Ser565Gly missense_variant 0.18
embB 4248211 c.1698G>T synonymous_variant 0.18
embB 4248233 c.1720C>T synonymous_variant 0.19
embB 4249469 p.Leu986Met missense_variant 0.16
embB 4249486 c.2973T>G synonymous_variant 0.18
embB 4249487 c.2974_2976delTTGinsCTC synonymous_variant 0.17
embB 4249521 p.Ala1003Val missense_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408102 p.Gly34Glu missense_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0