Rv0486 - c.462C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
9 Sensitive
2 RR-TB
19 HR-TB
4 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
85 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.2 | 2 |
| lineage2.2.1 | 7 |
| lineage4.9 | 30 |
| 20 | |
| lineage2.1;lineage4.9 | 12 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 3 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.1 | 3 |
| lineage2.2 | 1 |
| lineage1.1;lineage4 | 1 |
| La1.7 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.8 | 3 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage4.1.3 | 2 |
| lineage4.1.2.1 | 1 |
| lineage4.7 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.4.1.1 | 2 |
| La3 | 2 |
| lineage4.1.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.2.2 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.3.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage6.3.1 | 1 |
| lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 123 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1173633 | Other | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR4818615 | Sensitive | None | SRR1196566 | Other | lineage4.9 | None | SRR6044855 | Sensitive | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1173788 | Sensitive | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3416776 | Other | lineage2.1 | None | SRR1196677 | Other | lineage2.2 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | SRR1196494 | MDR-TB | None | ERR4830353 | Other | La1.7 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | ERR4811311 | Other | None | ERR4815752 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7496509 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR20970018 | Sensitive | lineage4.2.2 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4407463 | HR-TB | None | SRR1173778 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | ERR4815604 | Other | None | SRR3675214 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR7496517 | Other | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4816999 | Other | None | ERR4810741 | HR-TB | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR9117709 | Other | None | SRR1172234 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | SRR6046485 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1172857 | Other | None |
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