TB-Profiler result

Run: ERR4816151
Summary

Run ID: ERR4816151

Sample name:

Date: 01-04-2023 14:15:58

Number of reads: 782952

Percentage reads mapped: 74.52

Strain: lineage4.8

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.29 streptomycin
embA 4244193 p.Gly321Ser missense_variant 0.14 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6676 c.-626T>G upstream_gene_variant 0.18
gyrA 6700 c.-602T>C upstream_gene_variant 0.16
gyrA 6703 c.-599G>C upstream_gene_variant 0.17
gyrA 6712 c.-590G>C upstream_gene_variant 0.17
gyrA 6724 c.-578G>C upstream_gene_variant 0.17
gyrA 6730 c.-572A>G upstream_gene_variant 0.15
gyrA 6745 c.-557T>G upstream_gene_variant 0.15
gyrA 6751 c.-551G>C upstream_gene_variant 0.15
gyrA 6760 c.-542G>C upstream_gene_variant 0.19
gyrA 6763 c.-539G>A upstream_gene_variant 0.21
gyrA 6808 c.-494C>T upstream_gene_variant 0.16
gyrA 7006 c.-296T>C upstream_gene_variant 0.19
gyrA 7021 c.-281G>C upstream_gene_variant 0.24
gyrB 7023 p.Leu595Gln missense_variant 0.25
gyrA 7033 c.-269G>C upstream_gene_variant 0.2
gyrA 7048 c.-254G>A upstream_gene_variant 0.21
gyrA 7051 c.-251A>G upstream_gene_variant 0.21
gyrA 7060 c.-242T>C upstream_gene_variant 0.25
gyrA 7066 c.-236G>T upstream_gene_variant 0.21
gyrA 7081 c.-221T>C upstream_gene_variant 0.15
gyrA 7093 c.-209T>C upstream_gene_variant 0.17
gyrA 7108 c.-194G>A upstream_gene_variant 0.18
gyrA 7120 c.-182T>C upstream_gene_variant 0.17
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7412 c.111C>G synonymous_variant 0.32
gyrA 7427 c.126G>C synonymous_variant 0.32
gyrA 7442 c.141G>C synonymous_variant 0.33
gyrA 7457 c.156T>C synonymous_variant 0.32
gyrA 7466 c.165G>C synonymous_variant 0.35
gyrA 7475 c.174A>G synonymous_variant 0.3
gyrA 7480 p.Phe60Tyr missense_variant 0.3
gyrA 7484 c.183T>C synonymous_variant 0.3
gyrA 7490 c.189C>G synonymous_variant 0.3
gyrA 7496 c.195C>G synonymous_variant 0.28
gyrA 7499 c.198G>T synonymous_variant 0.28
gyrA 7511 c.210C>T synonymous_variant 0.24
gyrA 7523 c.222C>G synonymous_variant 0.25
gyrA 7532 c.231T>C synonymous_variant 0.26
gyrA 7538 c.237G>A synonymous_variant 0.26
gyrA 7571 c.270G>C synonymous_variant 0.32
gyrA 7585 p.Ser95Thr missense_variant 0.28
gyrA 7587 c.286C>T synonymous_variant 0.17
gyrA 7715 c.414G>C synonymous_variant 0.19
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.2
gyrA 7748 c.447A>G synonymous_variant 0.26
gyrA 7763 c.462T>G synonymous_variant 0.32
gyrA 7784 c.483A>G synonymous_variant 0.52
gyrA 7787 c.486G>A synonymous_variant 0.5
gyrA 7799 c.498A>G synonymous_variant 0.46
gyrA 7832 c.531G>T synonymous_variant 0.5
gyrA 7835 c.534A>G synonymous_variant 0.47
gyrA 7850 c.549C>G synonymous_variant 0.43
gyrA 7859 c.558A>G synonymous_variant 0.38
gyrA 7865 c.564T>C synonymous_variant 0.35
gyrA 7883 c.582G>T synonymous_variant 0.35
gyrA 7892 c.591G>C synonymous_variant 0.25
gyrA 7898 p.Asp199Glu missense_variant 0.25
gyrA 8354 c.1053G>C synonymous_variant 0.24
gyrA 8363 c.1062C>A synonymous_variant 0.21
gyrA 8366 c.1065G>C synonymous_variant 0.21
gyrA 8382 p.Leu361Met missense_variant 0.18
gyrA 8387 c.1086C>T synonymous_variant 0.19
gyrA 8390 c.1089C>G synonymous_variant 0.17
gyrA 8391 p.Tyr364His missense_variant 0.17
gyrA 8399 c.1098T>C synonymous_variant 0.16
gyrA 8402 c.1101C>T synonymous_variant 0.16
gyrA 8619 c.1318T>C synonymous_variant 0.16
gyrA 8672 c.1371A>G synonymous_variant 0.17
gyrA 8684 c.1383G>A synonymous_variant 0.17
gyrA 8693 c.1392T>C synonymous_variant 0.17
gyrA 8705 c.1404C>T synonymous_variant 0.15
gyrA 8706 c.1405C>T synonymous_variant 0.15
gyrA 8711 c.1410A>C synonymous_variant 0.15
gyrA 8723 c.1422G>C synonymous_variant 0.14
gyrA 8729 c.1428T>C synonymous_variant 0.15
gyrA 8756 c.1455A>G synonymous_variant 0.16
gyrA 9252 p.Val651Ile missense_variant 0.14
gyrA 9275 c.1974G>A synonymous_variant 0.17
gyrA 9278 c.1977G>C synonymous_variant 0.17
gyrA 9284 c.1983T>C synonymous_variant 0.15
gyrA 9296 c.1995T>C synonymous_variant 0.15
gyrA 9300 p.Ala667Ser missense_variant 0.17
gyrA 9304 p.Gly668Asp missense_variant 0.18
gyrA 9407 c.2106C>G synonymous_variant 0.19
gyrA 9419 c.2118T>C synonymous_variant 0.18
gyrA 9420 p.Ile707Ala missense_variant 0.18
gyrA 9446 c.2145C>T synonymous_variant 0.21
gyrA 9449 c.2148C>G synonymous_variant 0.17
gyrA 9452 c.2151G>C synonymous_variant 0.17
gyrA 9455 c.2154T>C synonymous_variant 0.17
gyrA 9467 c.2166T>C synonymous_variant 0.18
gyrA 9503 c.2202T>C synonymous_variant 0.16
gyrA 9518 c.2217A>G synonymous_variant 0.18
gyrA 9548 c.2247T>C synonymous_variant 0.16
gyrA 9551 c.2250G>C synonymous_variant 0.15
gyrA 9683 c.2382G>C synonymous_variant 0.17
gyrA 9686 c.2385A>C synonymous_variant 0.17
gyrA 9716 c.2415T>C synonymous_variant 0.16
fgd1 490917 c.135C>G synonymous_variant 0.19
fgd1 490921 p.Gln47Glu missense_variant 0.19
fgd1 490929 c.147C>A synonymous_variant 0.17
fgd1 490932 c.150T>C synonymous_variant 0.18
fgd1 490944 c.162G>C synonymous_variant 0.21
fgd1 490974 c.192T>C synonymous_variant 0.18
fgd1 490978 p.Asn66Glu missense_variant 0.17
fgd1 490983 c.201G>C synonymous_variant 0.17
fgd1 490984 p.Leu68Ile missense_variant 0.17
fgd1 490988 p.Leu69Gln missense_variant 0.17
fgd1 490998 c.216T>C synonymous_variant 0.2
fgd1 491007 c.225G>C synonymous_variant 0.24
fgd1 491013 c.231C>G synonymous_variant 0.21
fgd1 491043 c.261T>C synonymous_variant 0.2
fgd1 491244 c.462T>C synonymous_variant 0.17
fgd1 491250 c.468G>C synonymous_variant 0.2
fgd1 491259 c.477T>C synonymous_variant 0.26
fgd1 491277 c.495G>C synonymous_variant 0.2
fgd1 491283 p.Asp167Glu missense_variant 0.2
fgd1 491286 c.504G>C synonymous_variant 0.2
fgd1 491292 c.510G>C synonymous_variant 0.21
fgd1 491295 c.513C>G synonymous_variant 0.22
fgd1 491296 p.Val172Ile missense_variant 0.22
fgd1 491302 p.Ile174Val missense_variant 0.25
fgd1 491310 c.528C>G synonymous_variant 0.27
fgd1 491334 c.552C>T synonymous_variant 0.22
fgd1 491343 c.561C>G synonymous_variant 0.22
fgd1 491349 c.567T>C synonymous_variant 0.24
fgd1 491364 c.582T>C synonymous_variant 0.18
fgd1 491367 c.585G>C synonymous_variant 0.18
fgd1 491406 p.Met208Ile missense_variant 0.18
fgd1 491421 c.639A>G synonymous_variant 0.38
fgd1 491430 c.648T>G synonymous_variant 0.43
fgd1 491436 c.654T>C synonymous_variant 0.3
fgd1 491442 c.660A>C synonymous_variant 0.23
fgd1 491443 p.Ser221Asn missense_variant 0.23
fgd1 491448 c.666C>G synonymous_variant 0.23
fgd1 491453 p.Gly224Asp missense_variant 0.23
mshA 575689 c.342G>A synonymous_variant 0.19
mshA 575692 c.345G>C synonymous_variant 0.18
mshA 575695 c.348C>G synonymous_variant 0.16
mshA 575704 c.357T>C synonymous_variant 0.16
mshA 575713 c.366G>A synonymous_variant 0.26
mshA 575732 c.385_387delCTTinsTTG synonymous_variant 0.29
mshA 575740 c.393G>C synonymous_variant 0.32
mshA 575746 c.399C>G synonymous_variant 0.32
mshA 575755 c.408G>A synonymous_variant 0.32
mshA 575756 c.409C>T synonymous_variant 0.32
mshA 575771 p.Val142Ser missense_variant 0.28
mshA 575779 c.432A>G synonymous_variant 0.29
mshA 575782 c.435G>C synonymous_variant 0.29
mshA 575785 c.438T>G synonymous_variant 0.26
mshA 575788 c.441C>T synonymous_variant 0.29
mshA 575809 c.462C>T synonymous_variant 0.38
mshA 575821 c.474G>C synonymous_variant 0.38
mshA 575824 c.477T>G synonymous_variant 0.38
mshA 575833 c.486C>G synonymous_variant 0.35
mshA 575842 c.495G>C synonymous_variant 0.35
mshA 575845 c.498C>G synonymous_variant 0.35
mshA 575857 c.510G>C synonymous_variant 0.24
mshA 575872 c.525C>T synonymous_variant 0.19
mshA 575878 c.531A>G synonymous_variant 0.22
mshA 575893 c.546C>G synonymous_variant 0.22
mshA 575896 c.549G>C synonymous_variant 0.22
mshA 575905 c.558G>C synonymous_variant 0.22
mshA 575908 c.561A>G synonymous_variant 0.22
mshA 575923 c.576C>T synonymous_variant 0.26
mshA 575925 p.Gly193Ala missense_variant 0.26
mshA 575944 c.597T>C synonymous_variant 0.26
mshA 575947 c.600G>A synonymous_variant 0.26
ccsA 620289 c.399A>G synonymous_variant 0.15
ccsA 620295 c.405G>C synonymous_variant 0.2
ccsA 620307 c.417C>G synonymous_variant 0.18
rpoB 760091 c.285G>T synonymous_variant 0.2
rpoB 760101 c.295T>C synonymous_variant 0.21
rpoB 760112 c.306T>C synonymous_variant 0.21
rpoB 760118 c.312T>G synonymous_variant 0.21
rpoB 760121 c.315T>C synonymous_variant 0.2
rpoB 760124 c.318C>T synonymous_variant 0.2
rpoB 760130 p.Asp108Glu missense_variant 0.33
rpoB 760139 c.333A>G synonymous_variant 0.35
rpoB 760142 c.336C>G synonymous_variant 0.4
rpoB 760181 c.375T>G synonymous_variant 0.32
rpoB 760184 c.378A>G synonymous_variant 0.32
rpoB 760223 c.417T>C synonymous_variant 0.29
rpoB 760235 c.429T>C synonymous_variant 0.32
rpoB 760283 c.477G>C synonymous_variant 0.25
rpoB 760307 c.501T>C synonymous_variant 0.19
rpoB 760340 c.534G>T synonymous_variant 0.19
rpoB 760361 c.555T>C synonymous_variant 0.2
rpoB 760376 p.Asp190Glu missense_variant 0.22
rpoB 760381 p.Thr192Met missense_variant 0.24
rpoB 760406 c.600G>C synonymous_variant 0.29
rpoB 760412 c.606C>G synonymous_variant 0.32
rpoB 760418 c.612G>C synonymous_variant 0.3
rpoB 760424 c.618C>G synonymous_variant 0.32
rpoB 760427 c.621G>A synonymous_variant 0.3
rpoB 760430 c.624T>C synonymous_variant 0.3
rpoB 760591 p.Val262Ala missense_variant 0.16
rpoB 760611 c.805T>C synonymous_variant 0.16
rpoB 760674 c.868T>C synonymous_variant 0.19
rpoB 760679 c.873A>G synonymous_variant 0.19
rpoB 760683 c.877T>C synonymous_variant 0.19
rpoB 760718 c.912C>G synonymous_variant 0.26
rpoB 760724 c.918T>G synonymous_variant 0.23
rpoB 760727 c.921C>G synonymous_variant 0.2
rpoB 760730 c.924T>C synonymous_variant 0.2
rpoB 760779 p.Ser325Thr missense_variant 0.15
rpoB 760826 c.1020C>G synonymous_variant 0.16
rpoB 760829 c.1023C>T synonymous_variant 0.16
rpoB 760841 c.1035T>A synonymous_variant 0.24
rpoB 760845 p.Thr347Ser missense_variant 0.37
rpoB 760859 c.1053T>C synonymous_variant 0.4
rpoB 760862 c.1056G>C synonymous_variant 0.38
rpoB 760886 c.1080A>G synonymous_variant 0.39
rpoB 760919 c.1113C>G synonymous_variant 0.21
rpoB 760920 c.1114C>T synonymous_variant 0.21
rpoB 760934 c.1128C>T synonymous_variant 0.18
rpoB 760946 c.1140A>G synonymous_variant 0.26
rpoB 760982 c.1176G>C synonymous_variant 0.17
rpoB 760985 c.1179G>C synonymous_variant 0.17
rpoB 760991 c.1185G>C synonymous_variant 0.16
rpoB 761037 c.1231T>C synonymous_variant 0.18
rpoB 761051 c.1245G>C synonymous_variant 0.22
rpoB 761060 c.1254C>G synonymous_variant 0.24
rpoB 761063 c.1257C>G synonymous_variant 0.24
rpoB 761096 c.1290G>C synonymous_variant 0.31
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.29
rpoB 761102 c.1296A>G synonymous_variant 0.28
rpoB 761129 c.1323G>C synonymous_variant 0.31
rpoB 761133 c.1327T>C synonymous_variant 0.31
rpoB 761150 c.1344A>G synonymous_variant 0.37
rpoB 761153 c.1347G>C synonymous_variant 0.37
rpoB 761165 c.1359G>C synonymous_variant 0.41
rpoB 761180 c.1374A>C synonymous_variant 0.36
rpoB 761183 c.1377T>C synonymous_variant 0.33
rpoB 761189 c.1383T>C synonymous_variant 0.37
rpoB 761192 c.1386C>G synonymous_variant 0.42
rpoB 761195 c.1389G>C synonymous_variant 0.39
rpoB 761249 c.1443A>G synonymous_variant 0.41
rpoB 761255 c.1449T>G synonymous_variant 0.41
rpoB 761261 c.1455G>C synonymous_variant 0.27
rpoB 761264 c.1458C>G synonymous_variant 0.29
rpoB 761273 c.1467T>C synonymous_variant 0.32
rpoB 761282 c.1476C>G synonymous_variant 0.28
rpoB 761318 c.1512G>C synonymous_variant 0.31
rpoB 761327 c.1521A>G synonymous_variant 0.33
rpoB 761333 c.1527G>C synonymous_variant 0.33
rpoB 761336 c.1530C>T synonymous_variant 0.33
rpoB 761360 c.1554T>G synonymous_variant 0.28
rpoB 761362 p.Ser519Thr missense_variant 0.25
rpoB 761373 p.Val523His missense_variant 0.25
rpoB 761384 c.1578C>G synonymous_variant 0.3
rpoB 761408 c.1602G>C synonymous_variant 0.29
rpoB 761414 c.1608A>G synonymous_variant 0.29
rpoB 761423 c.1617T>C synonymous_variant 0.25
rpoB 761435 c.1629T>C synonymous_variant 0.19
rpoB 761444 c.1638T>C synonymous_variant 0.17
rpoB 761502 p.Pro566Ala missense_variant 0.17
rpoB 761570 c.1764T>C synonymous_variant 0.22
rpoB 761573 c.1767C>G synonymous_variant 0.23
rpoB 761579 c.1773G>C synonymous_variant 0.25
rpoB 761594 c.1788C>G synonymous_variant 0.3
rpoB 761606 c.1800C>G synonymous_variant 0.28
rpoB 761612 c.1806G>C synonymous_variant 0.28
rpoB 761615 c.1809A>C synonymous_variant 0.24
rpoB 761636 c.1830G>T synonymous_variant 0.14
rpoB 761645 c.1839C>G synonymous_variant 0.14
rpoB 761648 c.1842T>C synonymous_variant 0.16
rpoB 761657 c.1851C>G synonymous_variant 0.21
rpoB 761675 c.1869G>C synonymous_variant 0.26
rpoB 761690 c.1884G>C synonymous_variant 0.26
rpoB 761778 p.Asn658Asp missense_variant 0.18
rpoB 761791 p.Arg662His missense_variant 0.23
rpoB 761813 c.2007T>C synonymous_variant 0.27
rpoB 761819 c.2013G>C synonymous_variant 0.3
rpoB 761834 c.2028T>G synonymous_variant 0.3
rpoB 761848 p.Cys681Ser missense_variant 0.32
rpoB 761852 c.2046C>G synonymous_variant 0.33
rpoB 761859 p.Asp685Asn missense_variant 0.38
rpoB 761873 c.2067A>C synonymous_variant 0.4
rpoB 761885 c.2079T>C synonymous_variant 0.36
rpoB 761891 c.2085G>C synonymous_variant 0.36
rpoB 761903 c.2097T>C synonymous_variant 0.32
rpoB 761906 c.2100C>G synonymous_variant 0.32
rpoB 761909 c.2103T>C synonymous_variant 0.3
rpoB 761912 c.2106T>C synonymous_variant 0.3
rpoB 761915 p.Asp703Glu missense_variant 0.3
rpoB 761916 p.Asp704Asn missense_variant 0.3
rpoB 761948 c.2142G>C synonymous_variant 0.36
rpoB 761954 c.2148C>G synonymous_variant 0.35
rpoB 762014 c.2208C>G synonymous_variant 0.2
rpoB 762017 c.2211A>G synonymous_variant 0.19
rpoB 762038 c.2232C>T synonymous_variant 0.23
rpoB 762062 c.2256T>C synonymous_variant 0.24
rpoB 762065 c.2259T>C synonymous_variant 0.24
rpoB 762083 c.2277T>C synonymous_variant 0.24
rpoB 762086 c.2280G>C synonymous_variant 0.25
rpoB 762101 c.2295C>G synonymous_variant 0.25
rpoB 762114 p.Ile770Val missense_variant 0.27
rpoB 762131 c.2325C>G synonymous_variant 0.32
rpoB 762143 c.2337T>C synonymous_variant 0.29
rpoB 762149 c.2343G>C synonymous_variant 0.3
rpoB 762167 c.2361T>C synonymous_variant 0.21
rpoB 762176 c.2370T>C synonymous_variant 0.21
rpoB 762185 c.2379G>C synonymous_variant 0.22
rpoB 762209 c.2403C>G synonymous_variant 0.26
rpoB 762245 c.2439G>C synonymous_variant 0.31
rpoB 762254 c.2448T>G synonymous_variant 0.32
rpoB 762257 c.2451C>G synonymous_variant 0.31
rpoB 762266 c.2460T>G synonymous_variant 0.3
rpoB 762278 c.2472C>T synonymous_variant 0.32
rpoB 762284 c.2478G>C synonymous_variant 0.43
rpoB 762293 c.2487T>C synonymous_variant 0.31
rpoB 762296 c.2490G>C synonymous_variant 0.29
rpoB 762317 c.2511A>G synonymous_variant 0.32
rpoB 762323 c.2517C>G synonymous_variant 0.32
rpoB 762329 c.2523G>C synonymous_variant 0.26
rpoB 762338 c.2532T>C synonymous_variant 0.21
rpoB 762347 c.2541T>C synonymous_variant 0.24
rpoB 762353 c.2547C>G synonymous_variant 0.28
rpoB 762362 p.Glu852Asp missense_variant 0.25
rpoB 762369 c.2563T>C synonymous_variant 0.26
rpoC 762395 c.-975G>C upstream_gene_variant 0.25
rpoC 762398 c.-972T>C upstream_gene_variant 0.21
rpoC 762404 c.-966T>C upstream_gene_variant 0.22
rpoC 762410 c.-960T>C upstream_gene_variant 0.17
rpoC 762416 c.-954A>G upstream_gene_variant 0.23
rpoC 762419 c.-951C>G upstream_gene_variant 0.15
rpoC 762632 c.-738C>T upstream_gene_variant 0.25
rpoC 762929 c.-441G>C upstream_gene_variant 0.32
rpoC 762995 c.-375G>T upstream_gene_variant 0.25
rpoC 763028 c.-342T>C upstream_gene_variant 0.19
rpoC 763031 c.-339T>C upstream_gene_variant 0.18
rpoC 763034 c.-336C>G upstream_gene_variant 0.18
rpoC 763040 c.-330C>G upstream_gene_variant 0.2
rpoC 763070 c.-300T>C upstream_gene_variant 0.24
rpoC 763085 c.-285C>T upstream_gene_variant 0.23
rpoC 763094 c.-276G>C upstream_gene_variant 0.22
rpoC 763115 c.-255T>C upstream_gene_variant 0.26
rpoC 763127 c.-243G>C upstream_gene_variant 0.2
rpoC 763142 c.-228C>G upstream_gene_variant 0.22
rpoC 763166 c.-204A>G upstream_gene_variant 0.21
rpoC 763169 c.-201A>G upstream_gene_variant 0.22
rpoC 763441 c.72C>T synonymous_variant 0.15
rpoC 763444 c.75T>C synonymous_variant 0.16
rpoC 763456 c.87A>G synonymous_variant 0.26
rpoC 763480 c.111C>A synonymous_variant 0.26
rpoC 763486 c.117T>G synonymous_variant 0.21
rpoC 763492 c.123G>C synonymous_variant 0.17
rpoC 763528 c.159G>A synonymous_variant 0.26
rpoC 763531 c.162G>C synonymous_variant 0.28
rpoC 763546 c.177A>G synonymous_variant 0.23
rpoC 763570 c.201G>C synonymous_variant 0.22
rpoC 763573 c.204G>C synonymous_variant 0.19
rpoC 763633 c.264T>C synonymous_variant 0.23
rpoC 763636 c.267T>C synonymous_variant 0.24
rpoC 763648 c.279C>A synonymous_variant 0.31
rpoC 763660 c.291T>G synonymous_variant 0.24
rpoC 763669 c.300C>G synonymous_variant 0.2
rpoC 763672 c.303C>G synonymous_variant 0.19
rpoC 763702 c.333C>G synonymous_variant 0.18
rpoC 763709 c.340C>T synonymous_variant 0.17
rpoC 763717 c.348T>C synonymous_variant 0.16
rpoC 763732 c.363C>G synonymous_variant 0.16
rpoC 763744 c.375G>C synonymous_variant 0.16
rpoC 763816 c.447C>G synonymous_variant 0.17
rpoC 763836 p.Ala156Val missense_variant 0.29
rpoC 763851 p.Ala161Gly missense_variant 0.33
rpoC 763855 c.486C>T synonymous_variant 0.33
rpoC 763858 c.489A>G synonymous_variant 0.33
rpoC 763872 p.Gly168Ala missense_variant 0.36
rpoC 763876 c.507A>G synonymous_variant 0.36
rpoC 763879 c.510A>G synonymous_variant 0.36
rpoC 763894 c.525A>G synonymous_variant 0.34
rpoC 763951 c.582G>A synonymous_variant 0.36
rpoC 763960 c.591T>C synonymous_variant 0.32
rpoC 763967 p.Gly200Ser missense_variant 0.25
rpoC 763978 c.609C>G synonymous_variant 0.21
rpoC 763996 c.627T>A synonymous_variant 0.22
rpoC 764002 c.633C>A synonymous_variant 0.21
rpoC 764005 c.636G>C synonymous_variant 0.21
rpoC 764011 c.642T>C synonymous_variant 0.21
rpoC 764024 c.655T>C synonymous_variant 0.24
rpoC 764040 p.Ser224Asn missense_variant 0.21
rpoC 764044 c.675T>C synonymous_variant 0.22
rpoC 764059 c.690G>C synonymous_variant 0.19
rpoC 764071 c.702G>C synonymous_variant 0.16
rpoC 764083 c.714A>G synonymous_variant 0.17
rpoC 764098 c.729A>G synonymous_variant 0.32
rpoC 764188 c.819A>G synonymous_variant 0.69
rpoC 764195 p.Ser276Ile missense_variant 0.65
rpoC 764203 c.834G>T synonymous_variant 0.63
rpoC 764206 c.837T>C synonymous_variant 0.61
rpoC 764257 c.888G>C synonymous_variant 0.5
rpoC 764266 c.897T>G synonymous_variant 0.42
rpoC 764269 c.900G>C synonymous_variant 0.35
rpoC 764272 c.903G>C synonymous_variant 0.39
rpoC 764278 c.909A>G synonymous_variant 0.4
rpoC 764338 c.969G>A synonymous_variant 0.27
rpoC 764344 c.975C>T synonymous_variant 0.24
rpoC 764365 c.996C>T synonymous_variant 0.39
rpoC 764380 c.1011G>C synonymous_variant 0.42
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.39
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.37
rpoC 764405 c.1036A>C synonymous_variant 0.31
rpoC 764428 c.1059G>T synonymous_variant 0.2
rpoC 764431 c.1062G>C synonymous_variant 0.19
rpoC 764434 c.1065A>G synonymous_variant 0.19
rpoC 764446 c.1077T>C synonymous_variant 0.19
rpoC 764449 c.1080G>C synonymous_variant 0.18
rpoC 764452 c.1083T>G synonymous_variant 0.19
rpoC 764455 c.1086G>T synonymous_variant 0.19
rpoC 764458 c.1089G>C synonymous_variant 0.19
rpoC 764461 c.1092A>G synonymous_variant 0.24
rpoC 764497 c.1128A>G synonymous_variant 0.21
rpoC 764506 c.1137C>T synonymous_variant 0.21
rpoC 764510 c.1141C>T synonymous_variant 0.18
rpoC 764521 c.1152T>C synonymous_variant 0.15
rpoC 764533 c.1164C>T synonymous_variant 0.16
rpoC 764536 c.1167G>T synonymous_variant 0.18
rpoC 764539 c.1170C>G synonymous_variant 0.16
rpoC 764749 c.1380G>C synonymous_variant 0.22
rpoC 764764 c.1395T>C synonymous_variant 0.25
rpoC 764791 c.1422C>A synonymous_variant 0.21
rpoC 764809 c.1440C>T synonymous_variant 0.17
rpoC 764812 c.1443C>G synonymous_variant 0.17
rpoC 764815 c.1446A>G synonymous_variant 0.21
rpoC 764824 c.1455T>C synonymous_variant 0.19
rpoC 764858 c.1489T>C synonymous_variant 0.18
rpoC 765007 c.1638T>G synonymous_variant 0.23
rpoC 765008 c.1639T>C synonymous_variant 0.21
rpoC 765019 c.1650A>G synonymous_variant 0.24
rpoC 765034 c.1665T>C synonymous_variant 0.23
rpoC 765040 c.1671T>C synonymous_variant 0.23
rpoC 765041 c.1672T>C synonymous_variant 0.21
rpoC 765047 c.1678T>C synonymous_variant 0.21
rpoC 765055 c.1686C>G synonymous_variant 0.16
rpoC 765067 c.1698G>C synonymous_variant 0.17
rpoC 765319 c.1950A>G synonymous_variant 0.16
rpoC 765326 p.His653Val missense_variant 0.16
rpoC 765330 p.Ser654Asn missense_variant 0.17
rpoC 765339 p.Gln657Arg missense_variant 0.18
rpoC 765346 c.1977C>G synonymous_variant 0.16
rpoC 765349 c.1980T>C synonymous_variant 0.16
rpoC 765367 c.1998C>G synonymous_variant 0.21
rpoC 765383 p.Met672Leu missense_variant 0.35
rpoC 765408 p.Gly680Ala missense_variant 0.37
rpoC 765412 c.2043T>C synonymous_variant 0.43
rpoC 765421 c.2052C>G synonymous_variant 0.43
rpoC 765452 p.Ala695Ser missense_variant 0.35
rpoC 765478 c.2109T>C synonymous_variant 0.37
rpoC 765499 c.2130C>G synonymous_variant 0.37
rpoC 765529 c.2160C>T synonymous_variant 0.28
rpoC 765541 c.2172C>G synonymous_variant 0.28
rpoC 765547 c.2178C>A synonymous_variant 0.35
rpoC 765583 c.2214G>T synonymous_variant 0.53
rpoC 765592 c.2223C>G synonymous_variant 0.44
rpoC 765595 c.2226G>A synonymous_variant 0.44
rpoC 765622 p.Glu751Asp missense_variant 0.25
rpoC 765625 c.2256C>G synonymous_variant 0.22
rpoC 765628 c.2259G>C synonymous_variant 0.21
rpoC 765655 c.2286T>C synonymous_variant 0.22
rpoC 765694 c.2325G>T synonymous_variant 0.16
rpoC 765700 c.2331T>C synonymous_variant 0.19
rpoC 765734 c.2365T>C synonymous_variant 0.24
rpoC 765739 c.2370G>C synonymous_variant 0.23
rpoC 765753 p.Asp795Ala missense_variant 0.33
rpoC 765784 c.2415C>G synonymous_variant 0.33
rpoC 765787 c.2418C>T synonymous_variant 0.36
rpoC 765793 c.2424C>G synonymous_variant 0.28
rpoC 765796 c.2427C>T synonymous_variant 0.28
rpoC 765811 c.2442T>C synonymous_variant 0.32
rpoC 765814 c.2445A>G synonymous_variant 0.32
rpoC 765826 c.2457T>C synonymous_variant 0.31
rpoC 765850 c.2481G>C synonymous_variant 0.28
rpoC 765856 c.2487T>C synonymous_variant 0.29
rpoC 765877 c.2508C>G synonymous_variant 0.24
rpoC 765883 c.2514C>G synonymous_variant 0.24
rpoC 765886 c.2517C>G synonymous_variant 0.28
rpoC 765892 c.2523T>C synonymous_variant 0.28
rpoC 765937 c.2568T>C synonymous_variant 0.38
rpoC 765947 c.2578T>C synonymous_variant 0.38
rpoC 765961 c.2592G>A synonymous_variant 0.45
rpoC 765967 c.2598C>T synonymous_variant 0.43
rpoC 765970 c.2601C>G synonymous_variant 0.44
rpoC 765979 c.2610C>G synonymous_variant 0.43
rpoC 765982 c.2613C>T synonymous_variant 0.43
rpoC 765994 c.2625A>T synonymous_variant 0.52
rpoC 766009 c.2640G>C synonymous_variant 0.58
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.56
rpoC 766027 c.2658G>C synonymous_variant 0.59
rpoC 766082 p.Ala905Gln missense_variant 0.47
rpoC 766096 c.2727G>C synonymous_variant 0.35
rpoC 766129 c.2760C>G synonymous_variant 0.24
rpoC 766312 c.2943T>G synonymous_variant 0.14
rpoC 766321 c.2952C>G synonymous_variant 0.17
rpoC 766345 c.2976T>C synonymous_variant 0.21
rpoC 766348 c.2979A>G synonymous_variant 0.18
rpoC 766363 c.2994G>C synonymous_variant 0.2
rpoC 766369 c.3000C>G synonymous_variant 0.16
rpoC 766381 c.3012C>T synonymous_variant 0.18
rpoC 766384 c.3015A>G synonymous_variant 0.16
rpoC 766387 c.3018C>G synonymous_variant 0.17
rpoC 766393 c.3024C>G synonymous_variant 0.17
rpoC 766402 c.3033C>G synonymous_variant 0.17
rpoC 766408 c.3039C>T synonymous_variant 0.16
rpoC 766426 c.3057C>T synonymous_variant 0.41
rpoC 766447 c.3078T>C synonymous_variant 0.38
rpoC 766459 c.3090G>T synonymous_variant 0.35
rpoC 766483 c.3114G>C synonymous_variant 0.27
rpoC 766486 c.3117A>C synonymous_variant 0.27
rpoC 766492 c.3123T>C synonymous_variant 0.29
rpoC 766501 c.3132G>C synonymous_variant 0.34
rpoC 766522 c.3153C>G synonymous_variant 0.37
rpoC 766528 c.3159T>C synonymous_variant 0.37
rpoC 766531 c.3162G>C synonymous_variant 0.37
rpoC 766534 c.3165C>G synonymous_variant 0.37
rpoC 766542 p.Gly1058Asp missense_variant 0.42
rpoC 766546 p.Glu1059Asp missense_variant 0.38
rpoC 766549 c.3180G>C synonymous_variant 0.31
rpoC 766570 c.3201T>C synonymous_variant 0.32
rpoC 766573 c.3204T>C synonymous_variant 0.3
rpoC 766582 c.3213C>T synonymous_variant 0.26
rpoC 766585 c.3216T>C synonymous_variant 0.26
rpoC 766591 c.3222A>G synonymous_variant 0.28
rpoC 766594 c.3225G>C synonymous_variant 0.29
rpoC 766607 p.Ile1080Leu missense_variant 0.5
rpoC 766612 c.3243C>G synonymous_variant 0.38
rpoC 766618 c.3249G>T synonymous_variant 0.38
rpoC 766624 c.3255G>C synonymous_variant 0.33
rpoC 766645 c.3276A>G synonymous_variant 0.42
rpoC 766657 c.3288A>G synonymous_variant 0.42
rpoC 766660 c.3291G>C synonymous_variant 0.42
rpoC 766672 c.3303T>C synonymous_variant 0.44
rpoC 766708 c.3339A>G synonymous_variant 0.42
rpoC 766714 c.3345G>C synonymous_variant 0.39
rpoC 766726 c.3357T>C synonymous_variant 0.37
rpoC 766738 c.3369G>C synonymous_variant 0.45
rpoC 766750 c.3381C>G synonymous_variant 0.33
rpoC 766765 c.3396A>C synonymous_variant 0.32
rpoC 766774 c.3405T>C synonymous_variant 0.33
rpoC 766792 c.3423C>G synonymous_variant 0.42
rpoC 766801 c.3432C>A synonymous_variant 0.36
rpoC 766846 c.3477C>G synonymous_variant 0.33
rpoC 766861 c.3492G>C synonymous_variant 0.29
rpoC 766864 c.3495G>C synonymous_variant 0.3
rpoC 766867 c.3498C>G synonymous_variant 0.3
rpoC 766883 p.Ser1172Ala missense_variant 0.27
rpoC 766891 c.3522G>A synonymous_variant 0.33
rpoC 766894 c.3525T>C synonymous_variant 0.33
rpoC 766895 c.3526T>C synonymous_variant 0.35
rpoC 766900 c.3531T>C synonymous_variant 0.39
rpoC 766933 c.3564A>G synonymous_variant 0.36
rpoC 766945 c.3576A>G synonymous_variant 0.35
rpoC 766963 c.3594T>C synonymous_variant 0.3
rpoC 766972 c.3603G>C synonymous_variant 0.29
rpoC 766981 c.3612T>G synonymous_variant 0.27
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.22
rpoC 767014 c.3645G>C synonymous_variant 0.22
rpoC 767020 c.3651C>G synonymous_variant 0.2
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.22
rpoC 767059 c.3690T>G synonymous_variant 0.29
rpoC 767062 c.3693C>A synonymous_variant 0.28
rpoC 767098 c.3729T>C synonymous_variant 0.3
rpoC 767119 c.3750A>G synonymous_variant 0.32
rpoC 767134 c.3765C>A synonymous_variant 0.23
rpoC 767167 c.3798C>G synonymous_variant 0.25
rpoC 767180 p.Ala1271Gln missense_variant 0.31
rpoC 767191 c.3822C>G synonymous_variant 0.29
rpoC 767206 c.3837C>G synonymous_variant 0.26
rpoC 767209 c.3840T>C synonymous_variant 0.27
rpoC 767212 c.3843G>C synonymous_variant 0.25
rpoC 767221 c.3852C>G synonymous_variant 0.23
rpoC 767230 c.3861G>C synonymous_variant 0.22
rpoC 767233 c.3864T>C synonymous_variant 0.21
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775909 p.Leu858Phe missense_variant 0.19
mmpL5 776100 p.Thr794Ile missense_variant 0.19
mmpS5 779569 c.-664G>A upstream_gene_variant 0.15
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781628 c.69T>C synonymous_variant 0.16
rpsL 781631 c.72G>C synonymous_variant 0.18
rpsL 781643 c.84G>A synonymous_variant 0.24
rpsL 781649 c.90T>C synonymous_variant 0.23
rpsL 781655 c.96T>C synonymous_variant 0.26
rpsL 781658 c.99A>G synonymous_variant 0.24
rpsL 781682 c.123T>C synonymous_variant 0.34
rpsL 781709 c.150G>C synonymous_variant 0.3
rpsL 781728 c.169T>C synonymous_variant 0.29
rpsL 781733 c.174G>C synonymous_variant 0.28
rpsL 781736 c.177T>C synonymous_variant 0.27
rpsL 781751 c.192G>C synonymous_variant 0.27
rpsL 781754 c.195G>C synonymous_variant 0.27
rpsL 781760 c.201T>C synonymous_variant 0.28
rpsL 781763 c.204C>G synonymous_variant 0.28
rpsL 781772 c.213C>G synonymous_variant 0.27
rpsL 781832 c.273T>C synonymous_variant 0.2
rpsL 781835 c.276T>C synonymous_variant 0.2
rpsL 781838 c.279G>C synonymous_variant 0.2
rpsL 781841 c.282C>G synonymous_variant 0.2
rpsL 781862 c.303G>C synonymous_variant 0.19
rpsL 781865 c.306G>C synonymous_variant 0.19
rpsL 781868 c.309T>C synonymous_variant 0.17
rpsL 781871 c.312G>C synonymous_variant 0.17
rpsL 781877 c.318T>C synonymous_variant 0.16
rpsL 781892 c.333A>G synonymous_variant 0.22
rpsL 781898 c.339A>T synonymous_variant 0.21
rpsL 781916 c.357T>C synonymous_variant 0.21
rpsL 781929 p.Gly124Ser missense_variant 0.3
rplC 800612 c.-197A>G upstream_gene_variant 0.19
rplC 800618 c.-191T>C upstream_gene_variant 0.18
rplC 800624 c.-185G>A upstream_gene_variant 0.18
rplC 800628 c.-181_-179delGTGinsATA upstream_gene_variant 0.24
rplC 800648 c.-161A>G upstream_gene_variant 0.24
rplC 800654 c.-155T>C upstream_gene_variant 0.19
rplC 800693 c.-116A>C upstream_gene_variant 0.19
rplC 800702 c.-107G>T upstream_gene_variant 0.19
rplC 800703 c.-106T>C upstream_gene_variant 0.2
rplC 800715 c.-94A>C upstream_gene_variant 0.23
rplC 800720 c.-89T>C upstream_gene_variant 0.23
fbiC 1303489 c.559C>T synonymous_variant 0.18
fbiC 1303509 c.579G>C synonymous_variant 0.31
fbiC 1303554 c.624G>A synonymous_variant 0.47
fbiC 1303575 c.645G>C synonymous_variant 0.4
fbiC 1303581 c.651G>C synonymous_variant 0.25
fbiC 1303584 c.654C>G synonymous_variant 0.25
fbiC 1303590 c.660A>C synonymous_variant 0.27
fbiC 1303935 c.1005G>C synonymous_variant 0.14
fbiC 1303947 c.1017T>G synonymous_variant 0.22
fbiC 1303948 p.Gly340Arg missense_variant 0.22
fbiC 1303953 p.Asp341Glu missense_variant 0.25
fbiC 1303961 p.Arg344Leu missense_variant 0.25
fbiC 1303969 p.Val347Ile missense_variant 0.25
fbiC 1304559 p.Glu543Asp missense_variant 0.16
fbiC 1304565 c.1635C>G synonymous_variant 0.17
fbiC 1304568 c.1638T>C synonymous_variant 0.17
fbiC 1304580 c.1650T>C synonymous_variant 0.25
fbiC 1304640 c.1710A>C synonymous_variant 0.29
fbiC 1304675 p.Gly582Glu missense_variant 0.15
fbiC 1304711 p.Ala594Glu missense_variant 0.18
fbiC 1304715 c.1785G>C synonymous_variant 0.18
fbiC 1304724 c.1794A>G synonymous_variant 0.18
fbiC 1304727 c.1797A>G synonymous_variant 0.18
fbiC 1304742 c.1812T>G synonymous_variant 0.21
fbiC 1304748 c.1818T>C synonymous_variant 0.15
fbiC 1304754 c.1824G>A synonymous_variant 0.2
fbiC 1304755 c.1825_1827delCTAinsTTG synonymous_variant 0.18
fbiC 1304763 c.1833C>G synonymous_variant 0.2
fbiC 1304778 p.Asp616Glu missense_variant 0.17
fbiC 1304787 c.1857T>C synonymous_variant 0.2
fbiC 1304799 c.1869G>C synonymous_variant 0.33
fbiC 1304802 c.1872G>C synonymous_variant 0.31
fbiC 1304808 c.1878C>G synonymous_variant 0.4
fbiC 1304817 c.1887T>C synonymous_variant 0.38
fbiC 1304829 c.1899T>C synonymous_variant 0.55
fbiC 1304853 c.1923C>G synonymous_variant 0.93
fbiC 1304856 c.1926C>G synonymous_variant 0.86
fbiC 1304868 c.1938G>C synonymous_variant 0.56
fbiC 1304869 c.1939C>T synonymous_variant 0.56
fbiC 1304916 c.1986T>C synonymous_variant 0.47
fbiC 1304928 c.1998T>C synonymous_variant 0.33
fbiC 1304934 c.2004C>A synonymous_variant 0.36
fbiC 1304937 c.2007G>C synonymous_variant 0.36
fbiC 1304940 c.2010A>G synonymous_variant 0.38
fbiC 1304946 c.2016G>C synonymous_variant 0.38
fbiC 1304955 c.2025G>A synonymous_variant 0.25
fbiC 1304958 c.2028T>G synonymous_variant 0.25
fbiC 1304961 c.2031C>G synonymous_variant 0.25
fbiC 1305135 c.2205C>T synonymous_variant 0.15
atpE 1461217 p.Gly58Val missense_variant 0.14
atpE 1461219 c.175T>C synonymous_variant 0.21
atpE 1461224 c.180T>C synonymous_variant 0.21
atpE 1461233 c.189A>C synonymous_variant 0.18
atpE 1461254 c.210T>C synonymous_variant 0.18
atpE 1461275 c.231T>C synonymous_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.19
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.21
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.21
rrs 1472033 n.188A>G non_coding_transcript_exon_variant 0.21
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.21
rrs 1472040 n.195T>C non_coding_transcript_exon_variant 0.2
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.25
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.2
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.25
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.19
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.18
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.18
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.19
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.27
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.18
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.23
rrs 1472305 n.460T>G non_coding_transcript_exon_variant 0.29
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.33
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.25
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.25
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.25
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.23
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.31
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.15
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.29
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.24
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.24
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.33
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.4
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.4
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.28
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.18
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.19
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.18
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.23
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.22
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.35
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.39
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.4
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.33
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.33
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.25
rrl 1473944 n.287G>A non_coding_transcript_exon_variant 0.25
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.2
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.17
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.21
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.4
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.4
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.25
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.25
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.14
rrl 1475606 n.1949T>C non_coding_transcript_exon_variant 0.14
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.24
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.22
rrl 1476113 n.2456T>C non_coding_transcript_exon_variant 0.2
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.26
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.24
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.28
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.17
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.17
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.15
inhA 1673802 c.-400A>G upstream_gene_variant 0.3
inhA 1673808 c.-394A>G upstream_gene_variant 0.33
inhA 1673832 c.-370A>G upstream_gene_variant 0.33
inhA 1673838 c.-364T>C upstream_gene_variant 0.35
inhA 1673841 c.-361A>G upstream_gene_variant 0.37
inhA 1673847 c.-355A>C upstream_gene_variant 0.31
inhA 1673853 c.-349A>C upstream_gene_variant 0.32
fabG1 1673870 p.Ser144Thr missense_variant 0.41
inhA 1673901 c.-301A>G upstream_gene_variant 0.42
inhA 1673916 c.-286A>C upstream_gene_variant 0.35
fabG1 1673922 p.Ile161Met missense_variant 0.27
inhA 1674486 c.285T>C synonymous_variant 0.18
inhA 1674718 c.517_519delAGGinsCGA synonymous_variant 0.15
inhA 1674726 c.525G>T synonymous_variant 0.16
inhA 1674729 c.528G>C synonymous_variant 0.18
inhA 1674750 c.549T>C synonymous_variant 0.25
inhA 1674756 c.555T>C synonymous_variant 0.2
inhA 1674762 c.561T>C synonymous_variant 0.19
inhA 1674780 c.579T>G synonymous_variant 0.16
inhA 1674801 c.600T>C synonymous_variant 0.23
inhA 1674816 c.615T>C synonymous_variant 0.3
inhA 1674837 c.636C>A synonymous_variant 0.3
inhA 1674849 p.Gln216His missense_variant 0.29
inhA 1674870 c.669T>C synonymous_variant 0.35
inhA 1674879 c.678T>G synonymous_variant 0.28
inhA 1674883 p.Ile228Leu missense_variant 0.28
inhA 1674903 c.702T>C synonymous_variant 0.22
inhA 1674912 c.711G>C synonymous_variant 0.2
rpsA 1833589 c.48A>T synonymous_variant 0.19
rpsA 1833595 c.54T>G synonymous_variant 0.18
rpsA 1833613 c.72C>A synonymous_variant 0.15
rpsA 1833727 c.186G>C synonymous_variant 0.2
rpsA 1833730 c.189C>T synonymous_variant 0.17
rpsA 1833745 c.204G>C synonymous_variant 0.22
rpsA 1833760 c.219C>T synonymous_variant 0.28
rpsA 1833771 p.Asn77Ser missense_variant 0.27
rpsA 1833790 c.249T>C synonymous_variant 0.37
rpsA 1833793 c.252C>T synonymous_variant 0.37
rpsA 1833802 c.261A>G synonymous_variant 0.35
rpsA 1833805 c.264C>A synonymous_variant 0.35
rpsA 1833808 c.267G>C synonymous_variant 0.36
rpsA 1833811 c.270G>T synonymous_variant 0.35
rpsA 1833841 c.300C>G synonymous_variant 0.35
rpsA 1833847 c.306C>G synonymous_variant 0.33
rpsA 1833856 c.315A>G synonymous_variant 0.25
rpsA 1833862 c.321G>A synonymous_variant 0.24
rpsA 1833874 c.333T>C synonymous_variant 0.19
rpsA 1833928 c.387G>C synonymous_variant 0.17
rpsA 1833949 c.408T>C synonymous_variant 0.21
rpsA 1833970 c.429G>C synonymous_variant 0.16
rpsA 1833971 c.430C>T synonymous_variant 0.16
rpsA 1833976 c.435C>T synonymous_variant 0.16
rpsA 1834000 c.459G>C synonymous_variant 0.17
rpsA 1834015 c.474G>C synonymous_variant 0.15
rpsA 1834021 c.480C>T synonymous_variant 0.16
rpsA 1834030 c.489C>G synonymous_variant 0.15
rpsA 1834261 c.720A>G synonymous_variant 0.17
rpsA 1834264 c.723G>C synonymous_variant 0.17
rpsA 1834297 c.756C>G synonymous_variant 0.22
rpsA 1834303 c.762T>G synonymous_variant 0.17
rpsA 1834306 c.765T>C synonymous_variant 0.17
rpsA 1834348 c.807T>C synonymous_variant 0.23
rpsA 1834357 c.816T>G synonymous_variant 0.25
rpsA 1834366 c.825A>G synonymous_variant 0.24
rpsA 1834375 c.834G>A synonymous_variant 0.28
rpsA 1834378 c.837T>C synonymous_variant 0.26
rpsA 1834411 c.870T>C synonymous_variant 0.27
rpsA 1834417 c.876G>C synonymous_variant 0.25
rpsA 1834423 c.882G>C synonymous_variant 0.25
rpsA 1834435 c.894G>C synonymous_variant 0.19
rpsA 1834451 c.910T>C synonymous_variant 0.21
rpsA 1834465 c.924T>C synonymous_variant 0.23
rpsA 1834468 c.927A>G synonymous_variant 0.22
rpsA 1834474 c.933C>T synonymous_variant 0.22
rpsA 1834477 c.936C>T synonymous_variant 0.22
rpsA 1834489 c.948T>C synonymous_variant 0.31
rpsA 1834501 c.960G>C synonymous_variant 0.35
rpsA 1834546 c.1005T>C synonymous_variant 0.28
rpsA 1834555 c.1014T>G synonymous_variant 0.28
rpsA 1834606 c.1065C>G synonymous_variant 0.33
rpsA 1834609 c.1068T>C synonymous_variant 0.32
rpsA 1834633 c.1092A>G synonymous_variant 0.31
rpsA 1834639 c.1098T>C synonymous_variant 0.28
rpsA 1834690 c.1149T>C synonymous_variant 0.19
rpsA 1834747 c.1206A>G synonymous_variant 0.16
rpsA 1834756 c.1215G>A synonymous_variant 0.15
rpsA 1834765 p.Glu408Asp missense_variant 0.17
rpsA 1834775 p.Ala412Thr missense_variant 0.18
rpsA 1834780 c.1239A>G synonymous_variant 0.17
rpsA 1834789 c.1248T>C synonymous_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1917975 c.36C>T synonymous_variant 0.22
tlyA 1917981 c.42G>C synonymous_variant 0.17
tlyA 1917993 c.54A>G synonymous_variant 0.14
tlyA 1917999 c.60T>G synonymous_variant 0.14
tlyA 1918008 c.69C>G synonymous_variant 0.18
tlyA 1918023 c.84C>G synonymous_variant 0.22
tlyA 1918038 c.99C>G synonymous_variant 0.29
ndh 2102269 c.774C>G synonymous_variant 0.39
ndh 2102296 c.747C>G synonymous_variant 0.47
ndh 2102305 c.738T>A synonymous_variant 0.43
ndh 2102308 c.735G>C synonymous_variant 0.46
ndh 2102328 p.Leu239Met missense_variant 0.29
katG 2155641 p.Lys157Asn missense_variant 0.14
katG 2155662 c.450G>T synonymous_variant 0.38
katG 2155674 c.438G>C synonymous_variant 0.33
katG 2155677 c.435C>G synonymous_variant 0.38
katG 2155691 c.421T>C synonymous_variant 0.3
katG 2155696 p.Ala139Val missense_variant 0.3
katG 2155704 c.408C>G synonymous_variant 0.3
katG 2155716 c.396T>C synonymous_variant 0.38
katG 2155722 c.390G>C synonymous_variant 0.38
katG 2155728 c.384G>C synonymous_variant 0.38
katG 2155740 p.Gly124Gln missense_variant 0.38
katG 2155743 c.369G>C synonymous_variant 0.29
katG 2155747 p.Ala122Gly missense_variant 0.33
katG 2155766 p.His116Tyr missense_variant 0.43
katG 2155785 c.327T>C synonymous_variant 0.25
PPE35 2168149 p.Pro822Ser missense_variant 1.0
PPE35 2169902 p.Leu237Phe missense_variant 0.17
PPE35 2169910 p.Asn235Tyr missense_variant 0.25
PPE35 2169947 c.666T>C synonymous_variant 0.18
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289997 c.-756G>C upstream_gene_variant 0.15
pncA 2290015 c.-774A>G upstream_gene_variant 0.16
pncA 2290069 c.-828C>T upstream_gene_variant 0.17
pncA 2290072 c.-831T>C upstream_gene_variant 0.17
pncA 2290075 c.-834C>G upstream_gene_variant 0.18
pncA 2290084 c.-843T>C upstream_gene_variant 0.2
pncA 2290087 c.-846T>C upstream_gene_variant 0.2
pncA 2290108 c.-867C>G upstream_gene_variant 0.2
pncA 2290114 c.-873T>C upstream_gene_variant 0.22
pncA 2290117 c.-876C>T upstream_gene_variant 0.22
pncA 2290120 c.-881_-879delAATinsGAC upstream_gene_variant 0.18
pncA 2290123 c.-882G>C upstream_gene_variant 0.2
kasA 2517917 c.-198G>C upstream_gene_variant 0.25
kasA 2517941 c.-174C>G upstream_gene_variant 0.3
kasA 2517962 c.-153C>T upstream_gene_variant 0.26
kasA 2517974 c.-141T>C upstream_gene_variant 0.19
kasA 2517983 c.-132T>C upstream_gene_variant 0.23
kasA 2517989 c.-126T>C upstream_gene_variant 0.23
kasA 2517993 c.-122G>T upstream_gene_variant 0.22
kasA 2518019 c.-96A>G upstream_gene_variant 0.18
kasA 2518025 c.-90G>C upstream_gene_variant 0.17
kasA 2518031 c.-84G>C upstream_gene_variant 0.17
kasA 2518034 c.-81T>C upstream_gene_variant 0.17
kasA 2518040 c.-75G>T upstream_gene_variant 0.18
kasA 2518041 c.-74T>C upstream_gene_variant 0.18
kasA 2518049 c.-66G>C upstream_gene_variant 0.19
kasA 2518190 p.Ser26Ala missense_variant 0.16
kasA 2518220 c.106_108delCTGinsTTA synonymous_variant 0.15
kasA 2518248 p.Ala45Val missense_variant 0.16
kasA 2518279 c.165T>C synonymous_variant 0.18
kasA 2518297 c.183C>T synonymous_variant 0.17
kasA 2518300 c.186T>A synonymous_variant 0.19
kasA 2518312 p.Asp66Glu missense_variant 0.19
kasA 2518315 c.201G>C synonymous_variant 0.19
kasA 2518323 p.Ser70Asn missense_variant 0.19
kasA 2518561 c.447T>C synonymous_variant 0.29
kasA 2518672 c.558G>C synonymous_variant 0.17
kasA 2518688 p.Val192Ile missense_variant 0.17
kasA 2518711 c.597A>G synonymous_variant 0.18
kasA 2518714 c.600A>G synonymous_variant 0.17
kasA 2518717 c.603C>G synonymous_variant 0.15
kasA 2518732 c.618C>G synonymous_variant 0.17
kasA 2518747 c.633C>G synonymous_variant 0.21
kasA 2518783 c.669T>C synonymous_variant 0.21
kasA 2518789 c.675G>C synonymous_variant 0.2
kasA 2518792 c.678C>G synonymous_variant 0.2
kasA 2518795 c.681C>G synonymous_variant 0.2
kasA 2518843 c.729T>G synonymous_variant 0.16
kasA 2518853 p.Leu247Val missense_variant 0.16
kasA 2518864 c.750G>C synonymous_variant 0.16
kasA 2519107 c.993T>C synonymous_variant 0.25
kasA 2519110 p.Asp332Glu missense_variant 0.25
kasA 2519113 p.Gln333His missense_variant 0.25
kasA 2519137 c.1023T>G synonymous_variant 0.21
kasA 2519143 c.1029G>C synonymous_variant 0.27
kasA 2519152 c.1038G>C synonymous_variant 0.23
kasA 2519155 c.1041C>T synonymous_variant 0.25
kasA 2519158 c.1044C>A synonymous_variant 0.23
kasA 2519164 c.1050C>G synonymous_variant 0.21
kasA 2519173 c.1059C>G synonymous_variant 0.2
kasA 2519176 c.1062G>A synonymous_variant 0.21
kasA 2519179 c.1065G>C synonymous_variant 0.21
kasA 2519180 p.Val356Ile missense_variant 0.2
kasA 2519197 c.1083G>C synonymous_variant 0.25
kasA 2519200 c.1086G>T synonymous_variant 0.27
kasA 2519203 c.1089C>G synonymous_variant 0.27
kasA 2519218 c.1104G>A synonymous_variant 0.25
kasA 2519224 c.1110C>G synonymous_variant 0.23
kasA 2519227 c.1113G>C synonymous_variant 0.2
folC 2747341 c.258C>G synonymous_variant 0.24
folC 2747359 c.240C>G synonymous_variant 0.2
folC 2747364 p.Ala79Thr missense_variant 0.2
folC 2747371 c.228C>G synonymous_variant 0.22
folC 2747391 p.Ala70Thr missense_variant 0.2
folC 2747394 p.Ile69Val missense_variant 0.2
folC 2747401 p.Ser66Cys missense_variant 0.22
folC 2747404 c.195G>A synonymous_variant 0.2
folC 2747407 c.192T>C synonymous_variant 0.18
folC 2747412 p.Ser63Gly missense_variant 0.18
folC 2747413 p.Arg62Leu missense_variant 0.18
folC 2747416 c.183A>G synonymous_variant 0.18
folC 2747419 c.180C>G synonymous_variant 0.18
folC 2747422 c.177G>A synonymous_variant 0.27
folC 2747442 c.157T>C synonymous_variant 0.29
folC 2747443 c.156G>T synonymous_variant 0.29
folC 2747467 p.Asp44Glu missense_variant 0.36
folC 2747491 c.108A>G synonymous_variant 0.27
ribD 2987377 p.Ser180Tyr missense_variant 0.2
Rv2752c 3064998 c.1194A>G synonymous_variant 0.28
Rv2752c 3065016 c.1176C>T synonymous_variant 0.31
Rv2752c 3065052 c.1140G>A synonymous_variant 0.2
Rv2752c 3065082 c.1110G>T synonymous_variant 0.14
thyX 3067284 p.Ala221Gly missense_variant 0.44
thyX 3067316 c.630A>C synonymous_variant 0.33
thyX 3067319 c.627G>C synonymous_variant 0.33
thyX 3067325 c.621A>G synonymous_variant 0.33
thyX 3067349 c.597G>C synonymous_variant 0.33
thyX 3067355 c.591A>G synonymous_variant 0.23
thyX 3067364 c.582C>T synonymous_variant 0.23
thyX 3067367 c.579G>C synonymous_variant 0.23
thyX 3067377 p.Arg190Gln missense_variant 0.13
thyX 3067379 c.567C>T synonymous_variant 0.18
thyX 3067718 c.228C>G synonymous_variant 0.23
thyX 3067721 c.225T>C synonymous_variant 0.23
thyX 3067727 c.219A>C synonymous_variant 0.18
thyX 3067742 c.204A>G synonymous_variant 0.2
thyX 3067761 p.Arg62Lys missense_variant 0.21
thyX 3067781 c.165C>G synonymous_variant 0.2
thyX 3067788 p.Lys53Arg missense_variant 0.21
thyX 3067790 c.156C>G synonymous_variant 0.2
thyX 3067793 c.153T>C synonymous_variant 0.19
thyX 3067802 c.144C>G synonymous_variant 0.28
thyX 3067814 c.132T>C synonymous_variant 0.22
thyX 3067823 c.123G>C synonymous_variant 0.16
thyA 3073824 c.648A>G synonymous_variant 0.17
thyA 3073827 c.645A>G synonymous_variant 0.16
thyA 3073839 c.633T>C synonymous_variant 0.23
thyA 3073860 c.612C>G synonymous_variant 0.23
thyA 3073863 c.609T>C synonymous_variant 0.23
thyA 3073866 c.606C>G synonymous_variant 0.23
thyA 3073874 p.Ile200Val missense_variant 0.21
thyA 3073878 p.Glu198Asp missense_variant 0.22
thyA 3073881 c.591C>G synonymous_variant 0.22
thyA 3073884 c.588C>G synonymous_variant 0.22
thyA 3073888 p.Ser195Glu missense_variant 0.22
thyA 3073892 c.580T>C synonymous_variant 0.21
thyA 3073902 c.570C>G synonymous_variant 0.24
thyA 3073929 c.543T>C synonymous_variant 0.18
thyA 3074010 c.462C>G synonymous_variant 0.15
thyA 3074031 c.441T>C synonymous_variant 0.15
thyA 3074037 c.435C>G synonymous_variant 0.17
thyA 3074056 p.Glu139Ala missense_variant 0.14
thyA 3074648 c.-177T>G upstream_gene_variant 0.27
Rv3083 3448322 c.-182G>A upstream_gene_variant 1.0
Rv3083 3448497 c.-7T>A upstream_gene_variant 1.0
fprA 3473809 c.-198G>C upstream_gene_variant 0.22
fprA 3473812 c.-195G>A upstream_gene_variant 0.2
fbiA 3640660 p.Gln40Glu missense_variant 0.2
fbiB 3640671 c.-864T>C upstream_gene_variant 0.15
fbiA 3640681 p.Val47Ile missense_variant 0.15
fbiA 3640708 p.Leu56Val missense_variant 0.28
fbiB 3640713 c.-822T>G upstream_gene_variant 0.27
fbiB 3640719 c.-816C>T upstream_gene_variant 0.28
fbiB 3640743 c.-792T>C upstream_gene_variant 0.26
fbiB 3640747 c.-788_-786delCTGinsTTA upstream_gene_variant 0.26
fbiB 3640758 c.-777G>C upstream_gene_variant 0.23
fbiB 3640761 c.-774G>C upstream_gene_variant 0.22
fbiB 3640767 c.-768C>G upstream_gene_variant 0.19
fbiB 3640776 c.-759C>G upstream_gene_variant 0.21
fbiB 3640782 c.-753C>T upstream_gene_variant 0.17
fbiA 3640785 p.Gln81His missense_variant 0.18
fbiB 3640788 c.-747T>C upstream_gene_variant 0.18
fbiB 3640797 c.-738T>C upstream_gene_variant 0.17
fbiB 3640866 c.-669T>C upstream_gene_variant 0.19
fbiA 3640900 p.Gln120Gly missense_variant 0.31
fbiB 3640914 c.-621C>G upstream_gene_variant 0.25
fbiB 3640917 c.-618G>C upstream_gene_variant 0.25
fbiA 3640931 p.Glu130Ala missense_variant 0.32
fbiB 3640935 c.-600C>G upstream_gene_variant 0.33
fbiB 3640938 c.-597A>G upstream_gene_variant 0.3
fbiB 3640944 c.-591T>C upstream_gene_variant 0.3
fbiA 3640951 p.Gln137Asn missense_variant 0.33
fbiB 3640962 c.-573C>G upstream_gene_variant 0.38
fbiB 3640965 c.-570C>G upstream_gene_variant 0.38
fbiB 3640971 c.-564G>A upstream_gene_variant 0.38
fbiB 3640974 c.-561T>G upstream_gene_variant 0.38
fbiA 3640979 p.Thr146Ser missense_variant 0.29
fbiB 3640989 c.-546T>C upstream_gene_variant 0.29
fbiB 3640995 c.-540A>G upstream_gene_variant 0.2
fbiB 3640998 c.-537C>G upstream_gene_variant 0.2
fbiB 3641001 c.-534T>C upstream_gene_variant 0.19
fbiB 3641004 c.-531A>G upstream_gene_variant 0.19
fbiA 3641314 p.Thr258Glu missense_variant 0.18
fbiB 3641322 c.-213T>G upstream_gene_variant 0.18
fbiB 3641325 c.-210G>C upstream_gene_variant 0.18
fbiB 3641328 c.-207T>G upstream_gene_variant 0.17
fbiA 3641340 p.Asp266Glu missense_variant 0.18
fbiA 3641350 p.Ala270Gln missense_variant 0.2
fbiB 3641355 c.-180T>G upstream_gene_variant 0.2
fbiB 3642535 p.Arg334Gln missense_variant 0.18
rpoA 3877482 c.1026C>G synonymous_variant 0.18
rpoA 3877494 p.Glu338Asp missense_variant 0.24
rpoA 3877503 c.1005G>C synonymous_variant 0.24
rpoA 3877515 c.993G>C synonymous_variant 0.23
rpoA 3877557 c.951C>G synonymous_variant 0.2
rpoA 3877567 p.Ser314Thr missense_variant 0.25
rpoA 3877569 p.Pro313Ala missense_variant 0.26
rpoA 3877613 p.Ile299Val missense_variant 0.17
rpoA 3877656 c.852T>C synonymous_variant 0.24
rpoA 3877665 c.843C>G synonymous_variant 0.21
rpoA 3877668 c.840A>G synonymous_variant 0.21
rpoA 3877679 p.Ala277Ser missense_variant 0.15
rpoA 3877686 c.822A>G synonymous_variant 0.17
rpoA 3877692 c.816G>C synonymous_variant 0.19
rpoA 3877704 c.804G>T synonymous_variant 0.24
rpoA 3877731 c.777G>C synonymous_variant 0.33
rpoA 3877737 c.771G>C synonymous_variant 0.35
rpoA 3877743 c.765T>C synonymous_variant 0.35
rpoA 3877770 c.738A>G synonymous_variant 0.36
rpoA 3877776 c.732T>C synonymous_variant 0.32
rpoA 3877782 c.726T>C synonymous_variant 0.24
rpoA 3877794 c.714G>C synonymous_variant 0.21
rpoA 3877818 c.690A>G synonymous_variant 0.24
rpoA 3877839 c.669G>C synonymous_variant 0.24
rpoA 3877842 c.666A>G synonymous_variant 0.21
rpoA 3877857 c.651G>A synonymous_variant 0.17
rpoA 3877875 c.633T>C synonymous_variant 0.29
rpoA 3877881 c.627G>C synonymous_variant 0.25
rpoA 3877900 p.Ser203Thr missense_variant 0.27
rpoA 3877905 c.603A>G synonymous_variant 0.27
rpoA 3877908 p.Asn200Ser missense_variant 0.27
rpoA 3877920 c.588G>C synonymous_variant 0.29
rpoA 3877962 c.546G>T synonymous_variant 0.31
rpoA 3877971 p.Asp179Glu missense_variant 0.26
rpoA 3877989 c.519A>G synonymous_variant 0.26
rpoA 3878001 c.507A>G synonymous_variant 0.24
rpoA 3878019 c.489A>G synonymous_variant 0.17
rpoA 3878022 c.486T>C synonymous_variant 0.16
rpoA 3878028 c.480G>C synonymous_variant 0.16
rpoA 3878031 c.477T>C synonymous_variant 0.16
rpoA 3878040 c.468T>C synonymous_variant 0.18
rpoA 3878046 c.462T>G synonymous_variant 0.15
rpoA 3878049 c.459G>C synonymous_variant 0.15
rpoA 3878055 c.453A>G synonymous_variant 0.15
rpoA 3878106 c.402G>C synonymous_variant 0.16
rpoA 3878118 c.390T>C synonymous_variant 0.18
rpoA 3878130 c.378C>G synonymous_variant 0.24
rpoA 3878142 p.Gly122Ala missense_variant 0.21
rpoA 3878169 c.339G>C synonymous_variant 0.21
rpoA 3878184 c.324C>T synonymous_variant 0.17
rpoA 3878187 c.321C>G synonymous_variant 0.17
rpoA 3878193 c.315T>C synonymous_variant 0.18
rpoA 3878199 c.309T>C synonymous_variant 0.18
rpoA 3878205 c.303T>C synonymous_variant 0.18
rpoA 3878217 c.291A>G synonymous_variant 0.17
rpoA 3878226 c.282C>G synonymous_variant 0.2
rpoA 3878229 c.279C>G synonymous_variant 0.19
rpoA 3878322 c.186A>G synonymous_variant 0.18
rpoA 3878331 c.177A>G synonymous_variant 0.17
rpoA 3878334 c.174T>C synonymous_variant 0.17
rpoA 3878337 c.171T>C synonymous_variant 0.17
rpoA 3878346 c.162T>C synonymous_variant 0.19
rpoA 3878364 c.144A>C synonymous_variant 0.25
rpoA 3878370 c.138T>C synonymous_variant 0.25
rpoA 3878385 c.123C>G synonymous_variant 0.24
rpoA 3878391 c.117T>G synonymous_variant 0.25
rpoA 3878394 c.114G>T synonymous_variant 0.26
rpoA 3878436 c.72A>G synonymous_variant 0.18
rpoA 3878442 c.66G>C synonymous_variant 0.18
ddn 3986645 c.-199G>A upstream_gene_variant 0.35
ddn 3986655 c.-189A>T upstream_gene_variant 0.32
ddn 3986660 c.-184C>T upstream_gene_variant 0.35
ddn 3986667 c.-177_-176delCTinsAC upstream_gene_variant 0.3
ddn 3986696 c.-148G>C upstream_gene_variant 0.24
ddn 3986737 c.-107G>A upstream_gene_variant 0.15
clpC1 4038271 p.Pro812Ala missense_variant 0.22
clpC1 4038272 c.2433T>C synonymous_variant 0.22
clpC1 4038275 c.2430A>G synonymous_variant 0.22
clpC1 4038302 c.2403C>G synonymous_variant 0.23
clpC1 4038314 c.2391T>C synonymous_variant 0.18
clpC1 4038317 c.2388G>C synonymous_variant 0.18
clpC1 4038320 c.2385G>T synonymous_variant 0.18
clpC1 4038335 c.2370C>G synonymous_variant 0.18
clpC1 4038356 c.2349T>C synonymous_variant 0.19
clpC1 4038359 c.2346A>G synonymous_variant 0.21
clpC1 4038368 c.2337T>C synonymous_variant 0.17
clpC1 4038388 c.2317T>C synonymous_variant 0.15
clpC1 4038416 c.2289C>G synonymous_variant 0.15
clpC1 4038519 p.Arg729Gln missense_variant 0.14
clpC1 4038533 c.2170_2172delCGCinsAGG synonymous_variant 0.2
clpC1 4038683 c.2022T>C synonymous_variant 0.27
clpC1 4038695 c.2010C>G synonymous_variant 0.29
clpC1 4038701 c.2004G>C synonymous_variant 0.25
clpC1 4038704 c.2001T>C synonymous_variant 0.23
clpC1 4038713 c.1992T>C synonymous_variant 0.28
clpC1 4038746 c.1959C>G synonymous_variant 0.55
clpC1 4038755 c.1950G>C synonymous_variant 0.55
clpC1 4038773 c.1932T>C synonymous_variant 0.48
clpC1 4038782 c.1923G>C synonymous_variant 0.47
clpC1 4038790 c.1915C>T synonymous_variant 0.42
clpC1 4038812 c.1893T>C synonymous_variant 0.42
clpC1 4038815 c.1890G>T synonymous_variant 0.44
clpC1 4038863 c.1842G>T synonymous_variant 0.55
clpC1 4038869 c.1836G>A synonymous_variant 0.54
clpC1 4038878 c.1827A>G synonymous_variant 0.57
clpC1 4038896 c.1809C>T synonymous_variant 0.55
clpC1 4038905 c.1800A>G synonymous_variant 0.46
clpC1 4038911 c.1794G>T synonymous_variant 0.5
clpC1 4038914 c.1791G>C synonymous_variant 0.5
clpC1 4038917 c.1788C>T synonymous_variant 0.48
clpC1 4038923 c.1782A>G synonymous_variant 0.44
clpC1 4038953 c.1752A>G synonymous_variant 0.32
clpC1 4038956 c.1749T>C synonymous_variant 0.32
clpC1 4038965 c.1740T>C synonymous_variant 0.35
clpC1 4038971 c.1734T>C synonymous_variant 0.32
clpC1 4038974 c.1731T>C synonymous_variant 0.33
clpC1 4038977 c.1728G>C synonymous_variant 0.34
clpC1 4038989 c.1716T>C synonymous_variant 0.37
clpC1 4039004 c.1701C>G synonymous_variant 0.38
clpC1 4039022 c.1683A>G synonymous_variant 0.35
clpC1 4039037 c.1668T>C synonymous_variant 0.32
clpC1 4039064 c.1641C>T synonymous_variant 0.29
clpC1 4039085 c.1620A>G synonymous_variant 0.23
clpC1 4039090 c.1615C>T synonymous_variant 0.23
clpC1 4039097 c.1608G>C synonymous_variant 0.21
clpC1 4039124 c.1581C>G synonymous_variant 0.21
clpC1 4039319 c.1386T>C synonymous_variant 0.18
clpC1 4039322 c.1383T>G synonymous_variant 0.14
clpC1 4039454 c.1251A>T synonymous_variant 0.3
clpC1 4039463 c.1242C>G synonymous_variant 0.27
clpC1 4039466 c.1239T>C synonymous_variant 0.2
clpC1 4039469 c.1236T>C synonymous_variant 0.2
clpC1 4039481 c.1224T>G synonymous_variant 0.25
clpC1 4039487 c.1218G>C synonymous_variant 0.21
clpC1 4039499 c.1206G>C synonymous_variant 0.18
clpC1 4039508 c.1197G>T synonymous_variant 0.2
clpC1 4039517 c.1188C>G synonymous_variant 0.32
clpC1 4039526 c.1179G>C synonymous_variant 0.24
clpC1 4039541 c.1164C>G synonymous_variant 0.29
clpC1 4039556 c.1149G>C synonymous_variant 0.48
clpC1 4039570 p.Met379Leu missense_variant 0.43
clpC1 4039576 p.Ala377Ser missense_variant 0.43
clpC1 4039577 c.1128T>C synonymous_variant 0.43
clpC1 4039589 c.1116G>C synonymous_variant 0.41
clpC1 4039610 c.1095G>C synonymous_variant 0.37
clpC1 4039616 c.1089G>C synonymous_variant 0.36
clpC1 4039649 c.1056G>C synonymous_variant 0.39
clpC1 4039682 c.1023C>G synonymous_variant 0.37
clpC1 4039694 c.1011G>C synonymous_variant 0.26
clpC1 4039724 c.981A>G synonymous_variant 0.29
clpC1 4039751 c.954A>G synonymous_variant 0.28
clpC1 4039757 c.948A>G synonymous_variant 0.24
clpC1 4039760 c.945T>C synonymous_variant 0.25
clpC1 4039766 c.939T>C synonymous_variant 0.27
clpC1 4039769 c.936C>G synonymous_variant 0.23
clpC1 4039775 c.930G>C synonymous_variant 0.31
clpC1 4039778 c.927A>G synonymous_variant 0.27
clpC1 4039781 c.924G>C synonymous_variant 0.27
clpC1 4039790 c.915C>G synonymous_variant 0.31
clpC1 4039817 c.888A>T synonymous_variant 0.24
clpC1 4039820 c.885T>C synonymous_variant 0.24
clpC1 4039823 c.882T>A synonymous_variant 0.19
clpC1 4039826 c.879C>G synonymous_variant 0.21
clpC1 4039831 c.874T>C synonymous_variant 0.25
clpC1 4039850 c.855T>C synonymous_variant 0.33
clpC1 4039865 c.840T>C synonymous_variant 0.35
clpC1 4039898 c.807C>G synonymous_variant 0.22
clpC1 4039928 p.Ser259Trp missense_variant 0.18
clpC1 4039937 c.768G>C synonymous_variant 0.19
clpC1 4039946 c.759A>T synonymous_variant 0.18
clpC1 4039949 c.756G>C synonymous_variant 0.18
clpC1 4039952 c.753T>C synonymous_variant 0.22
clpC1 4039979 c.726C>G synonymous_variant 0.19
clpC1 4039991 c.714G>T synonymous_variant 0.2
clpC1 4039996 p.Glu237Gln missense_variant 0.18
clpC1 4040003 c.702G>C synonymous_variant 0.19
clpC1 4040024 c.681A>G synonymous_variant 0.25
clpC1 4040042 c.663C>A synonymous_variant 0.4
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.33
clpC1 4040093 c.612C>G synonymous_variant 0.31
clpC1 4040105 c.600C>G synonymous_variant 0.25
clpC1 4040147 c.558A>G synonymous_variant 0.3
clpC1 4040153 c.552A>G synonymous_variant 0.32
clpC1 4040162 c.543G>C synonymous_variant 0.28
clpC1 4040165 c.540G>C synonymous_variant 0.25
clpC1 4040171 c.534C>G synonymous_variant 0.31
clpC1 4040180 c.525C>G synonymous_variant 0.36
clpC1 4040201 c.504C>G synonymous_variant 0.31
clpC1 4040207 c.498T>G synonymous_variant 0.32
clpC1 4040213 c.490_492delTCTinsAGC synonymous_variant 0.3
clpC1 4040225 c.480A>C synonymous_variant 0.26
clpC1 4040228 c.477G>C synonymous_variant 0.26
clpC1 4040231 c.474C>T synonymous_variant 0.26
clpC1 4040237 c.468C>T synonymous_variant 0.3
clpC1 4040249 c.456A>G synonymous_variant 0.29
clpC1 4040252 c.453C>G synonymous_variant 0.29
clpC1 4040267 c.438A>G synonymous_variant 0.28
clpC1 4040273 c.432T>C synonymous_variant 0.29
clpC1 4040276 c.427_429delTCCinsAGT synonymous_variant 0.29
clpC1 4040279 c.426C>G synonymous_variant 0.31
clpC1 4040306 c.399G>C synonymous_variant 0.4
clpC1 4040312 c.393G>C synonymous_variant 0.18
clpC1 4040423 c.282A>G synonymous_variant 0.19
clpC1 4040431 c.274T>C synonymous_variant 0.17
clpC1 4040435 c.270G>C synonymous_variant 0.17
clpC1 4040444 c.261C>G synonymous_variant 0.17
embC 4240112 p.Ile84Val missense_variant 0.15
embC 4240115 p.Thr85Ser missense_variant 0.14
embC 4240141 c.279A>G synonymous_variant 0.17
embC 4240145 p.Ala95Thr missense_variant 0.17
embC 4240150 c.288A>G synonymous_variant 0.16
embC 4240151 p.Ser97Pro missense_variant 0.16
embC 4240160 p.Thr100Ser missense_variant 0.17
embC 4240175 c.313T>C synonymous_variant 0.2
embC 4240178 c.316T>C synonymous_variant 0.2
embC 4240183 c.321A>G synonymous_variant 0.21
embC 4240204 c.342T>C synonymous_variant 0.19
embC 4240210 c.348C>G synonymous_variant 0.19
embC 4240216 c.354T>C synonymous_variant 0.2
embC 4240222 c.360G>C synonymous_variant 0.2
embC 4240229 p.Leu123Met missense_variant 0.14
embC 4240819 c.957A>C synonymous_variant 0.15
embC 4240822 c.960C>G synonymous_variant 0.15
embC 4240855 c.993G>C synonymous_variant 0.16
embC 4240859 p.Leu333Val missense_variant 0.16
embC 4240867 c.1005T>G synonymous_variant 0.17
embC 4240870 c.1008T>C synonymous_variant 0.16
embC 4240875 p.Ser338Thr missense_variant 0.17
embC 4240879 c.1017G>C synonymous_variant 0.17
embC 4240885 c.1023T>C synonymous_variant 0.16
embC 4240900 c.1038A>G synonymous_variant 0.17
embC 4240909 c.1047G>C synonymous_variant 0.2
embC 4240911 p.Ala350Val missense_variant 0.2
embC 4240921 c.1059C>G synonymous_variant 0.25
embC 4240924 c.1062C>G synonymous_variant 0.24
embC 4240934 p.Val358Leu missense_variant 0.21
embC 4240945 c.1083T>C synonymous_variant 0.18
embC 4240951 c.1089C>G synonymous_variant 0.19
embC 4241822 p.Phe654Ile missense_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244183 c.951G>C synonymous_variant 0.17
embA 4244184 p.Ser318Leu missense_variant 0.17
embA 4244207 c.975C>G synonymous_variant 0.15
embA 4244213 c.981C>G synonymous_variant 0.15
embA 4244728 p.Phe499Trp missense_variant 0.16
embA 4244762 c.1530C>T synonymous_variant 0.14
embA 4244933 c.1701A>G synonymous_variant 0.2
embB 4247437 c.924A>G synonymous_variant 0.24
embB 4247455 c.942C>A synonymous_variant 0.24
embB 4247470 c.957T>C synonymous_variant 0.24
embB 4247497 c.984T>C synonymous_variant 0.21
embB 4247512 c.999T>C synonymous_variant 0.26
embB 4247539 c.1026T>C synonymous_variant 0.3
embB 4247550 p.Ala346Gly missense_variant 0.33
embB 4247554 c.1041T>C synonymous_variant 0.33
embB 4247566 c.1053C>G synonymous_variant 0.31
embB 4247572 c.1059A>C synonymous_variant 0.27
embB 4247579 p.Ala356Thr missense_variant 0.25
embB 4247989 c.1476G>C synonymous_variant 0.18
embB 4247992 c.1479G>C synonymous_variant 0.17
embB 4248007 c.1494C>G synonymous_variant 0.16
embB 4248008 c.1495C>T synonymous_variant 0.16
embB 4248035 p.Val508Ile missense_variant 0.19
embB 4248055 c.1542G>C synonymous_variant 0.19
embB 4248070 c.1557T>C synonymous_variant 0.17
embB 4248085 c.1572T>C synonymous_variant 0.18
embB 4248106 c.1593C>G synonymous_variant 0.26
embB 4248133 c.1620C>A synonymous_variant 0.17
embB 4248170 p.Ala553Ser missense_variant 0.12
embB 4248220 c.1707A>G synonymous_variant 0.19
embB 4248241 c.1728C>T synonymous_variant 0.21
embB 4248244 c.1731C>G synonymous_variant 0.18
embB 4248253 c.1740C>G synonymous_variant 0.28
embB 4248280 c.1767C>G synonymous_variant 0.18
embB 4248283 c.1770C>G synonymous_variant 0.18
aftB 4268102 c.735C>G synonymous_variant 0.2
aftB 4268105 c.732T>C synonymous_variant 0.2
aftB 4268555 c.282A>G synonymous_variant 0.16
aftB 4268602 p.Leu79Met missense_variant 0.14
aftB 4268615 c.222C>G synonymous_variant 0.25
aftB 4268618 c.219G>C synonymous_variant 0.29
aftB 4268626 p.Gly71Ser missense_variant 0.29
aftB 4268631 p.Val69Ala missense_variant 0.25
aftB 4268633 c.204T>C synonymous_variant 0.25
aftB 4268642 c.195T>C synonymous_variant 0.25
aftB 4268645 c.192G>C synonymous_variant 0.25
aftB 4268654 c.183A>C synonymous_variant 0.2
aftB 4268829 p.Arg3Leu missense_variant 0.13
aftB 4269549 c.-713C>T upstream_gene_variant 0.18
aftB 4269555 c.-719C>G upstream_gene_variant 0.18
aftB 4269564 c.-728G>C upstream_gene_variant 0.18
aftB 4269572 c.-736A>C upstream_gene_variant 0.18
aftB 4269573 c.-737A>G upstream_gene_variant 0.18
aftB 4269588 c.-752G>C upstream_gene_variant 0.17
ubiA 4269647 p.Ser63Cys missense_variant 0.16
aftB 4269660 c.-824C>G upstream_gene_variant 0.27
ubiA 4269665 p.Met57Val missense_variant 0.25
ubiA 4269667 p.Ser56Leu missense_variant 0.25
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0