Rv0668 - c.1380G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
16 Sensitive
17 RR-TB
19 HR-TB
10 MDR-TB
4 Pre-XDR-TB
2 XDR-TB
41 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.2 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.8 | 10 |
| M.canetti;lineage4.9 | 3 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2;lineage4 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.9 | 26 |
| La1.3 | 1 |
| lineage2.2.1 | 14 |
| lineage3 | 5 |
| lineage4 | 1 |
| La1.8.1 | 2 |
| lineage3.1.2.1 | 1 |
| 3 | |
| La1.7.1 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4.1.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.7 | 1 |
| La2;M.canetti | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage5.1.1 | 1 |
| lineage4.6.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| M.canetti | 1 |
| lineage4.3.2.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3.1.1 | 1 |
| lineage3.1;lineage9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 109 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR29050859 | Other | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR4816470 | HR-TB | lineage3 | None | SRR7496471 | Sensitive | lineage4 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR11342634 | MDR-TB | lineage4.8 | None | ERR3283032 | Other | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR7535086 | Other | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR7236330 | Other | La1.8.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4816151 | Sensitive | lineage4.8 | None | SRR6046485 | Other | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR10808730 | Other | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | ERR4817915 | Other | lineage4.9 | None | ERR266126 | Sensitive | La2;M.canetti | None | SRR2101471 | Sensitive | lineage4.4.1.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR6896383 | Sensitive | lineage4.4.1.1 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR2432997 | Other | lineage4.8 | None | ERR6358991 | HR-TB | None | ERR751345 | Other | lineage5.1.1 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR16157123 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR3797043 | Sensitive | lineage4.9 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR266120 | Sensitive | M.canetti | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1173310 | Other | lineage3.1.1 | None | ERR3283042 | Other | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR4815079 | RR-TB | lineage3 | None |
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