TB-Profiler result

Run: SRR14782539
Summary

Run ID: SRR14782539

Sample name:

Date: 03-04-2023 11:29:57

Number of reads: 4288807

Percentage reads mapped: 70.42

Strain: lineage4.2.1

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.2 Euro-American H;T;LAM None 0.97
lineage4.2.1 Euro-American (TUR) H3;H4 None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.37 rifampicin
rpoB 761155 p.Ser450Phe missense_variant 0.66 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.22 rifampicin
rpsL 781822 p.Lys88Arg missense_variant 0.99 streptomycin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.56 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.48 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.33 kanamycin, capreomycin, aminoglycosides, amikacin
fabG1 1673425 c.-15C>T upstream_gene_variant 0.97 isoniazid, ethionamide
katG 2155168 p.Ser315Thr missense_variant 0.97 isoniazid
eis 2715344 c.-12C>T upstream_gene_variant 0.96 kanamycin
embB 4247402 p.Ser297Ala missense_variant 0.99 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491247 c.465C>T synonymous_variant 1.0
ccsA 619969 p.Val27Ile missense_variant 0.99
rpoB 760944 p.Gln380Glu missense_variant 0.15
rpoB 760958 c.1152G>C synonymous_variant 0.16
rpoB 760959 p.Val385Thr missense_variant 0.16
rpoB 760965 p.Met387Leu missense_variant 0.16
rpoB 760970 c.1164G>C synonymous_variant 0.16
rpoB 760973 c.1167G>C synonymous_variant 0.19
rpoB 760982 c.1176G>C synonymous_variant 0.2
rpoB 760985 c.1179G>C synonymous_variant 0.21
rpoB 760988 c.1182C>G synonymous_variant 0.21
rpoB 760991 c.1185G>T synonymous_variant 0.21
rpoB 760997 c.1191G>C synonymous_variant 0.24
rpoB 761015 c.1209G>C synonymous_variant 0.32
rpoB 761027 c.1221A>C synonymous_variant 0.34
rpoB 761036 c.1230G>C synonymous_variant 0.35
rpoB 761037 c.1231T>C synonymous_variant 0.37
rpoB 761051 c.1245G>C synonymous_variant 0.36
rpoB 761054 c.1248G>C synonymous_variant 0.41
rpoB 761060 c.1254C>G synonymous_variant 0.41
rpoB 761063 c.1257C>G synonymous_variant 0.42
rpoB 761088 c.1282_1284delAGCinsTCG synonymous_variant 0.42
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.42
rpoB 761102 c.1296A>G synonymous_variant 0.42
rpoB 761132 c.1326G>C synonymous_variant 0.38
rpoB 761133 c.1327T>C synonymous_variant 0.38
rpoB 761138 c.1332C>G synonymous_variant 0.38
rpoB 761150 c.1344A>C synonymous_variant 0.36
rpoB 761162 c.1356G>C synonymous_variant 0.29
rpoB 761165 c.1359G>C synonymous_variant 0.27
rpoB 761168 c.1362C>G synonymous_variant 0.26
rpoB 761174 c.1368T>C synonymous_variant 0.24
rpoB 761180 c.1374A>C synonymous_variant 0.23
rpoB 761183 c.1377T>C synonymous_variant 0.23
rpoB 761186 p.Glu460Asp missense_variant 0.23
rpoB 761195 c.1389G>C synonymous_variant 0.22
rpoB 761207 c.1401C>T synonymous_variant 0.2
rpoB 761213 c.1407G>C synonymous_variant 0.17
rpoB 762003 p.Asn733Gln missense_variant 0.14
rpoB 762009 p.Leu735Met missense_variant 0.14
rpoB 762015 p.Glu737Ser missense_variant 0.14
rpoB 762026 c.2220G>C synonymous_variant 0.14
rpoB 762053 c.2247T>C synonymous_variant 0.14
rpoB 762057 p.Ile751Val missense_variant 0.15
rpoB 762062 c.2256T>C synonymous_variant 0.15
rpoB 762065 c.2259T>C synonymous_variant 0.15
rpoB 762083 c.2277T>C synonymous_variant 0.14
rpoB 762086 c.2280G>C synonymous_variant 0.14
rpoB 762098 c.2292C>G synonymous_variant 0.14
rpoB 762101 c.2295C>T synonymous_variant 0.13
rpoC 763468 c.99G>C synonymous_variant 0.15
rpoC 763483 c.114G>C synonymous_variant 0.17
rpoC 763486 c.117T>G synonymous_variant 0.19
rpoC 763504 c.135C>A synonymous_variant 0.22
rpoC 763507 c.138G>C synonymous_variant 0.23
rpoC 763528 c.159G>C synonymous_variant 0.25
rpoC 763531 c.162G>C synonymous_variant 0.25
rpoC 763534 c.165T>C synonymous_variant 0.25
rpoC 763537 c.168C>T synonymous_variant 0.24
rpoC 763546 c.177A>G synonymous_variant 0.23
rpoC 763550 p.Tyr61Ala missense_variant 0.22
rpoC 763570 c.201G>C synonymous_variant 0.24
rpoC 763622 p.Ala85Ser missense_variant 0.22
rpoC 763633 c.264T>C synonymous_variant 0.23
rpoC 763636 c.267T>C synonymous_variant 0.21
rpoC 763639 p.Glu90Asp missense_variant 0.22
rpoC 763642 c.273G>C synonymous_variant 0.23
rpoC 763660 c.291T>G synonymous_variant 0.21
rpoC 763669 c.300C>G synonymous_variant 0.2
rpoC 763696 c.327T>C synonymous_variant 0.22
rpoC 763705 c.336G>T synonymous_variant 0.18
rpoC 763708 c.339G>C synonymous_variant 0.17
rpoC 763714 c.345G>C synonymous_variant 0.17
rpoC 763717 c.348T>C synonymous_variant 0.17
rpoC 763732 c.363C>G synonymous_variant 0.14
rpoC 763744 c.375G>C synonymous_variant 0.12
rpoC 763751 p.Ile128Val missense_variant 0.11
rpoC 764308 c.939G>C synonymous_variant 0.19
rpoC 764311 c.942C>G synonymous_variant 0.2
rpoC 764344 c.975C>T synonymous_variant 0.26
rpoC 764359 c.990C>G synonymous_variant 0.38
rpoC 764371 c.1002G>C synonymous_variant 0.29
rpoC 764377 c.1008C>G synonymous_variant 0.24
rpoC 764380 c.1011G>C synonymous_variant 0.23
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.23
rpoC 764404 c.1035C>T synonymous_variant 0.25
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.26
rpoC 764428 c.1059G>C synonymous_variant 0.29
rpoC 764434 c.1065A>G synonymous_variant 0.26
rpoC 764435 c.1066A>C synonymous_variant 0.26
rpoC 764441 p.Ile358Leu missense_variant 0.27
rpoC 764446 c.1077T>C synonymous_variant 0.25
rpoC 764449 c.1080G>C synonymous_variant 0.25
rpoC 764452 c.1083T>C synonymous_variant 0.25
rpoC 764458 c.1089G>C synonymous_variant 0.26
rpoC 764461 c.1092A>G synonymous_variant 0.27
rpoC 764485 c.1116G>C synonymous_variant 0.31
rpoC 764497 c.1128A>G synonymous_variant 0.32
rpoC 764498 p.Ser377Ala missense_variant 0.31
rpoC 764507 p.Ala380Ser missense_variant 0.35
rpoC 764521 c.1152T>C synonymous_variant 0.36
rpoC 764539 c.1170C>G synonymous_variant 0.41
rpoC 764542 c.1173C>G synonymous_variant 0.47
rpoC 764548 c.1179G>C synonymous_variant 0.49
rpoC 764560 c.1191T>C synonymous_variant 0.5
rpoC 764575 c.1206T>C synonymous_variant 0.48
rpoC 764581 c.1212T>C synonymous_variant 0.46
rpoC 764582 p.Leu405Met missense_variant 0.46
rpoC 764605 c.1236G>C synonymous_variant 0.5
rpoC 764611 c.1242G>T synonymous_variant 0.5
rpoC 764635 c.1266C>G synonymous_variant 0.45
rpoC 764641 c.1272C>T synonymous_variant 0.42
rpoC 764650 c.1281G>C synonymous_variant 0.42
rpoC 764665 c.1296C>G synonymous_variant 0.42
rpoC 764668 c.1299C>T synonymous_variant 0.41
rpoC 764695 c.1326T>C synonymous_variant 0.34
rpoC 764706 p.Leu446Gln missense_variant 0.34
rpoC 764746 c.1377G>T synonymous_variant 0.38
rpoC 764749 c.1380G>C synonymous_variant 0.37
rpoC 764758 c.1389C>G synonymous_variant 0.36
rpoC 764764 c.1395T>C synonymous_variant 0.35
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.34
rpoC 764804 p.Gln479Phe missense_variant 0.29
rpoC 764809 c.1440C>T synonymous_variant 0.27
rpoC 764812 c.1443C>G synonymous_variant 0.27
rpoC 764815 c.1446A>G synonymous_variant 0.27
rpoC 764817 p.Val483Gly missense_variant 0.7
rpoC 764824 c.1455T>C synonymous_variant 0.28
rpoC 764833 c.1464A>G synonymous_variant 0.29
rpoC 764843 p.Ala492Thr missense_variant 0.3
rpoC 764857 c.1488G>C synonymous_variant 0.26
rpoC 764858 c.1489T>C synonymous_variant 0.26
rpoC 764872 c.1503A>C synonymous_variant 0.24
rpoC 764887 c.1518G>T synonymous_variant 0.13
rpoC 764888 c.1519T>C synonymous_variant 0.13
rpoC 764893 c.1524T>C synonymous_variant 0.11
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
Rv1258c 1406822 c.519A>C synonymous_variant 0.46
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.2
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.2
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.2
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.2
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.22
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.41
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.42
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.41
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.31
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.14
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.12
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.12
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.12
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.13
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.13
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.11
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.11
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.11
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.12
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.25
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.25
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.27
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.46
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.48
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.5
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.55
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.52
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.5
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.42
rrs 1472674 n.829T>A non_coding_transcript_exon_variant 0.4
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.4
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.4
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.4
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.4
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.4
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.4
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.41
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.4
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.36
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.16
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.41
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.41
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.41
rrs 1472973 n.1128A>C non_coding_transcript_exon_variant 0.22
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.22
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.42
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.41
rrs 1473022 n.1177G>A non_coding_transcript_exon_variant 0.49
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.5
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.51
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.51
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.51
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.52
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.45
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.42
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.42
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.41
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.41
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.39
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.39
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.4
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.41
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.41
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.47
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.44
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.48
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.5
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.47
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.4
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.38
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.36
rrs 1473317 n.1472G>A non_coding_transcript_exon_variant 0.36
rrl 1474133 n.476T>A non_coding_transcript_exon_variant 0.14
rrl 1474141 n.484G>C non_coding_transcript_exon_variant 0.15
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.16
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.19
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.19
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.19
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.19
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.19
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.19
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.19
rrl 1474186 n.529A>T non_coding_transcript_exon_variant 0.2
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.21
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.28
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.24
rrl 1474275 n.618T>A non_coding_transcript_exon_variant 0.2
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.17
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.17
rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 0.16
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.14
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.14
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.14
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.15
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.23
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.23
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.23
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.22
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.21
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.23
rrl 1474381 n.724T>A non_coding_transcript_exon_variant 0.21
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.19
rrl 1474444 n.787G>C non_coding_transcript_exon_variant 0.19
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.23
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.25
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.46
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.41
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.43
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.41
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.4
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.38
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.36
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.36
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.36
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.3
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.29
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.3
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.3
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.3
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.3
rrl 1474662 n.1005C>A non_coding_transcript_exon_variant 0.4
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.42
rrl 1474688 n.1031G>T non_coding_transcript_exon_variant 0.44
rrl 1474710 n.1053T>G non_coding_transcript_exon_variant 0.41
rrl 1474711 n.1054_1055insAA non_coding_transcript_exon_variant 0.4
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.39
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.39
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.43
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.44
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.4
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.41
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.42
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.44
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.46
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.47
rrl 1474784 n.1127C>T non_coding_transcript_exon_variant 0.48
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.48
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.41
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.39
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.38
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.38
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.28
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.28
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.25
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.17
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 0.2
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.27
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.37
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.44
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.48
rrl 1475757 n.2101_2104delACCC non_coding_transcript_exon_variant 0.5
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.5
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.5
rrl 1475766 n.2109G>C non_coding_transcript_exon_variant 0.49
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.5
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.51
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.52
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.48
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.47
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.47
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.48
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.49
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.51
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.45
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.44
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.42
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.38
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.3
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.29
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.26
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.26
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.26
rrl 1475990 n.2333G>A non_coding_transcript_exon_variant 0.25
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.22
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.22
rrl 1476000 n.2343G>A non_coding_transcript_exon_variant 0.21
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.21
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.23
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.23
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.22
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.33
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.33
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.37
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.43
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.42
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.42
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.42
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.41
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.41
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.42
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.42
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.35
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.35
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.34
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.34
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.34
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.34
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.33
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.33
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.34
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.43
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.45
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.49
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.51
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.54
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.49
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.37
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.27
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.24
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.2
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.2
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.2
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.19
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.18
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.19
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 0.18
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.18
fabG1 1673553 p.Asp38Glu missense_variant 0.16
rpsA 1833694 c.153G>C synonymous_variant 0.13
rpsA 1833697 c.156C>G synonymous_variant 0.13
rpsA 1833721 c.180A>G synonymous_variant 0.16
rpsA 1833727 c.186G>C synonymous_variant 0.16
rpsA 1833733 c.192C>G synonymous_variant 0.16
rpsA 1833734 p.Ala65Ser missense_variant 0.16
rpsA 1833742 c.201A>G synonymous_variant 0.19
rpsA 1833763 c.222C>G synonymous_variant 0.19
rpsA 1833769 c.228C>G synonymous_variant 0.19
rpsA 1833770 p.Asn77Asp missense_variant 0.19
rpsA 1833781 c.240T>G synonymous_variant 0.15
rpsA 1833782 p.Ser81Ala missense_variant 0.15
rpsA 1833787 c.246C>G synonymous_variant 0.16
rpsA 1833790 c.249T>C synonymous_variant 0.16
rpsA 1833794 p.Glu85Thr missense_variant 0.16
rpsA 1833802 c.261A>G synonymous_variant 0.18
rpsA 1833811 c.270G>C synonymous_variant 0.19
rpsA 1833829 c.288A>G synonymous_variant 0.21
rpsA 1833835 c.294C>T synonymous_variant 0.21
rpsA 1833838 c.297G>C synonymous_variant 0.2
rpsA 1833841 c.300C>G synonymous_variant 0.18
rpsA 1833850 c.309C>G synonymous_variant 0.17
rpsA 1833856 c.315A>G synonymous_variant 0.14
rpsA 1833862 c.321G>C synonymous_variant 0.15
rpsA 1833874 c.333T>C synonymous_variant 0.17
rpsA 1833884 p.Thr115Asp missense_variant 0.17
rpsA 1833893 p.Ala118Lys missense_variant 0.15
rpsA 1833896 p.Leu119Ile missense_variant 0.15
rpsA 1833905 p.Lys122Glu missense_variant 0.14
rpsA 1833912 p.Glu124Gly missense_variant 0.14
rpsA 1833915 p.Ala125Val missense_variant 0.14
rpsA 1833920 p.Lys127Glu missense_variant 0.14
rpsA 1833928 c.387G>C synonymous_variant 0.17
rpsA 1833940 c.399C>G synonymous_variant 0.19
rpsA 1833949 c.408T>C synonymous_variant 0.16
rpsA 1833955 c.414G>C synonymous_variant 0.17
rpsA 1833970 c.429G>C synonymous_variant 0.18
rpsA 1833979 c.438T>C synonymous_variant 0.2
rpsA 1833985 c.444G>C synonymous_variant 0.2
rpsA 1833988 c.447C>G synonymous_variant 0.2
rpsA 1833994 c.453G>C synonymous_variant 0.2
rpsA 1833997 c.456G>C synonymous_variant 0.2
rpsA 1834012 c.471G>C synonymous_variant 0.17
rpsA 1834025 p.Gln162Ala missense_variant 0.19
rpsA 1834040 p.Lys167Gln missense_variant 0.19
rpsA 1834043 p.Glu168Lys missense_variant 0.19
rpsA 1834046 p.Ile169Leu missense_variant 0.19
rpsA 1834054 c.513C>G synonymous_variant 0.21
rpsA 1834093 c.552G>C synonymous_variant 0.11
rpsA 1834231 c.690T>C synonymous_variant 0.1
rpsA 1834243 c.702G>C synonymous_variant 0.11
rpsA 1834249 c.708T>C synonymous_variant 0.15
rpsA 1834261 c.720A>G synonymous_variant 0.19
rpsA 1834264 c.723G>C synonymous_variant 0.19
rpsA 1834294 c.753G>C synonymous_variant 0.23
rpsA 1834298 p.Gln253Glu missense_variant 0.23
rpsA 1834303 c.762T>G synonymous_variant 0.23
rpsA 1834306 c.765T>C synonymous_variant 0.24
rpsA 1834307 p.Asp256Gln missense_variant 0.23
rpsA 1834327 c.786G>C synonymous_variant 0.27
rpsA 1834333 p.Asp264Glu missense_variant 0.27
rpsA 1834336 c.795C>G synonymous_variant 0.26
rpsA 1834348 c.807T>C synonymous_variant 0.22
rpsA 1834354 c.813G>T synonymous_variant 0.21
rpsA 1834357 c.816T>C synonymous_variant 0.21
rpsA 1834360 c.819G>C synonymous_variant 0.2
rpsA 1834361 c.820T>C synonymous_variant 0.2
rpsA 1834366 c.825A>G synonymous_variant 0.2
rpsA 1834369 c.828C>G synonymous_variant 0.2
rpsA 1834378 c.837T>C synonymous_variant 0.24
rpsA 1834384 c.843A>G synonymous_variant 0.23
rpsA 1834395 p.Arg285Gln missense_variant 0.23
rpsA 1834398 p.His286Leu missense_variant 0.23
rpsA 1834411 c.870T>C synonymous_variant 0.21
rpsA 1834417 c.876G>C synonymous_variant 0.17
rpsA 1834418 p.Ile293Leu missense_variant 0.17
rpsA 1834423 c.882G>C synonymous_variant 0.16
rpsA 1834427 p.Ile296Val missense_variant 0.17
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.15
rpsA 1834456 c.915T>G synonymous_variant 0.15
rpsA 1834468 c.927A>G synonymous_variant 0.14
rpsA 1834480 c.939C>G synonymous_variant 0.11
rpsA 1834486 p.Glu315Asp missense_variant 0.12
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2169879 p.Phe245Cys missense_variant 0.97
PPE35 2170065 p.Ala183Gly missense_variant 0.31
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2519071 p.Asp319Glu missense_variant 0.15
pepQ 2860159 p.Ala87Gly missense_variant 0.16
ald 3086742 c.-78A>C upstream_gene_variant 0.98
ald 3086788 c.-32T>C upstream_gene_variant 0.99
fbiD 3339734 p.Ala206Gly missense_variant 0.64
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3878641 c.-134C>G upstream_gene_variant 0.3
clpC1 4039960 p.Thr249Ser missense_variant 0.13
clpC1 4039974 p.Asp244Gly missense_variant 0.2
clpC1 4039977 p.Lys243Arg missense_variant 0.2
clpC1 4039988 c.717C>G synonymous_variant 0.2
clpC1 4039991 c.714G>C synonymous_variant 0.2
clpC1 4039994 p.Glu237Asp missense_variant 0.2
clpC1 4040001 p.His235Arg missense_variant 0.18
clpC1 4040003 p.Val234Asp missense_variant 0.18
clpC1 4040009 c.696C>G synonymous_variant 0.2
clpC1 4040015 c.690G>C synonymous_variant 0.21
clpC1 4040021 c.684A>C synonymous_variant 0.21
clpC1 4040024 c.681A>G synonymous_variant 0.21
clpC1 4040033 c.672G>C synonymous_variant 0.23
clpC1 4040063 c.642G>C synonymous_variant 0.23
clpC1 4040069 c.636G>C synonymous_variant 0.21
clpC1 4040087 c.618G>C synonymous_variant 0.19
clpC1 4040090 c.615T>C synonymous_variant 0.18
clpC1 4040108 c.597G>C synonymous_variant 0.16
embC 4240409 p.Pro183Ala missense_variant 0.21
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4246527 p.Ala5Gly missense_variant 0.24
embB 4246584 p.Arg24Pro missense_variant 0.11
embB 4249594 c.3081G>A synonymous_variant 0.94
ethA 4326632 p.His281Pro missense_variant 0.99
ethA 4328376 c.-903G>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0