Rv1630 - c.690T>C
Drug resistance types
65 Sensitive
39 RR-TB
109 HR-TB
36 MDR-TB
12 Pre-XDR-TB
0 XDR-TB
137 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.1 | 3 |
| 104 | |
| lineage4.9 | 104 |
| lineage2.2.1 | 34 |
| lineage4.5 | 4 |
| La1.8.1 | 5 |
| lineage2.1 | 2 |
| lineage2.2 | 3 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4 | 31 |
| lineage2 | 4 |
| lineage4.4.2 | 1 |
| lineage4.8 | 13 |
| lineage4;lineage2.2 | 1 |
| lineage1.1.2 | 3 |
| lineage4.1 | 3 |
| lineage4.1.1 | 2 |
| lineage4.3.3 | 4 |
| lineage4.1.2.1 | 15 |
| lineage1.2.1.1 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage3 | 11 |
| lineage3.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage4.6.1.2 | 5 |
| lineage2.2.2 | 3 |
| lineage4.8;La3 | 1 |
| lineage3.1.3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.9.1 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.8.2 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.7 | 3 |
| lineage4.1.3 | 3 |
| lineage4.3.2.1 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.8.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4.1.2 | 2 |
| La1 | 1 |
| La1.2 | 1 |
| lineage4.9;La1.3 | 1 |
| La1.3 | 4 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.6.5 | 1 |
| lineage1.1.3.1 | 1 |
| lineage6.3.1 | 1 |
| lineage6 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 398 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14801749 | Sensitive | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR15368973 | Other | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19303884 | HR-TB | None | SRR20632814 | Sensitive | lineage4 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR8692807 | Other | lineage4.9 | None | SRR22424765 | MDR-TB | lineage4 | None | ERR11081258 | Other | lineage4.8 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | ERR176778 | HR-TB | None | SRR8692791 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692887 | Other | None | ERR4815604 | HR-TB | None | ERR4815171 | HR-TB | lineage1.1.2 | None | SRR3675465 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176779 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4814623 | Other | lineage4.8 | None | SRR3416776 | Other | lineage2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675221 | HR-TB | None | ERR4814700 | Other | lineage4.3.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675236 | HR-TB | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR181887 | HR-TB | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | SRR3675510 | Other | None | ERR4816964 | Other | lineage4.9 | None | ERR4815752 | Other | lineage4.9 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR2229084 | Sensitive | lineage4.8 | dk | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675545 | HR-TB | None | ERR4817060 | RR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675558 | HR-TB | None | ERR2229154 | Sensitive | lineage4.8 | None | ERR212125 | HR-TB | lineage4 | None | ERR4816470 | Other | lineage3 | None | ERR4817069 | RR-TB | None | SRR3675572 | Other | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR2229233 | Sensitive | lineage4 | None | ERR4816548 | MDR-TB | lineage4.5 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816756 | RR-TB | None | ERR4815815 | Sensitive | lineage4 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR4816425 | Other | lineage2.2.2 | None | ERR4817735 | Other | lineage4.8 | None | ERR4819012 | Other | lineage1.1.2 | None | SRR7496472 | Other | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR2510756 | HR-TB | lineage2.2.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR4819017 | RR-TB | lineage3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4819051 | Other | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341456 | Other | None | ERR4818536 | Other | lineage4.9 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR4818615 | Other | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4820324 | Other | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | SRR5341302 | HR-TB | None | ERR4819910 | Other | lineage4.9 | None | ERR1023509 | Other | None | SRR5341333 | HR-TB | None | ERR4819933 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | ERR4820151 | RR-TB | lineage4.8 | None | SRR5341330 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821655 | Sensitive | lineage4 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821057 | HR-TB | lineage4 | None | ERR4821214 | RR-TB | None | ERR4821550 | Other | lineage2.2.1 | None | SRR6045892 | Sensitive | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044790 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6044911 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6046046 | Other | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6046299 | HR-TB | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR6046492 | Other | None | ERR323037 | HR-TB | lineage4 | None | SRR6046540 | HR-TB | None | SRR6046839 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046737 | Other | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831718 | Pre-XDR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR294248 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311090 | HR-TB | None | SRR7496509 | Other | None | SRR7496471 | Sensitive | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7496517 | Other | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR7535086 | Other | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7585435 | Other | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323043 | HR-TB | None | ERR067712 | HR-TB | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR036207 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063862 | HR-TB | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | ERR11049020 | Other | lineage4.8 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283010 | Other | La1 | None | ERR3283008 | Other | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283014 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283027 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3439265 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797016 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797082 | Other | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797069 | Other | None | ERR3797079 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797086 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797087 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4596902 | HR-TB | lineage3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4796577 | MDR-TB | None | ERR4769552 | Other | La1.3 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769555 | Other | La1.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4800341 | Other | lineage3 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR5336148 | Other | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359069 | Other | lineage4.9 | None | ERR736874 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR702406 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736848 | HR-TB | None | ERR736867 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9634265 | Sensitive | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786569 | Other | lineage4.8 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR10808399 | Sensitive | lineage4 | None | ERR9787197 | Other | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1169194 | Other | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172234 | Other | None | SRR1172717 | Other | lineage4.9 | None | SRR1172728 | MDR-TB | None | SRR1173118 | Other | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172817 | HR-TB | None | SRR1173310 | MDR-TB | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1173788 | Other | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181368 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1196494 | MDR-TB | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None |
|---|
