Run ID: SRR10869071
Sample name:
Date: 02-04-2023 19:38:14
Number of reads: 1492202
Percentage reads mapped: 59.39
Strain: lineage2.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 0.91 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.41 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.6 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.48 | kanamycin, capreomycin, aminoglycosides, amikacin |
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
pncA | 2288933 | p.Tyr103* | stop_gained | 1.0 | pyrazinamide |
ethR | 4327831 | p.Ala95Thr | missense_variant | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.32 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.13 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.14 |
rpoB | 761032 | p.Gln409Leu | missense_variant | 0.12 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.12 |
rpoB | 761051 | c.1245G>T | synonymous_variant | 0.12 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.12 |
rpoB | 761058 | p.Val418Thr | missense_variant | 0.12 |
rpoB | 761063 | c.1257C>G | synonymous_variant | 0.12 |
rpoB | 761084 | c.1278C>A | synonymous_variant | 0.13 |
rpoB | 761088 | c.1282_1283delAGinsTC | synonymous_variant | 0.12 |
rpoB | 761096 | c.1290G>C | synonymous_variant | 0.12 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.12 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.14 |
rpoB | 761132 | c.1326G>C | synonymous_variant | 0.11 |
rpoB | 762026 | c.2220G>C | synonymous_variant | 0.14 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.14 |
rpoB | 762057 | p.Ile751Val | missense_variant | 0.13 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.14 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.13 |
rpoB | 762080 | c.2274G>C | synonymous_variant | 0.13 |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.2 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.18 |
rpoB | 762117 | p.Ser771Gly | missense_variant | 0.18 |
rpoB | 762125 | p.Glu773Asp | missense_variant | 0.2 |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.2 |
rpoB | 762137 | c.2331C>T | synonymous_variant | 0.19 |
rpoB | 762140 | c.2334G>C | synonymous_variant | 0.2 |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.21 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.21 |
rpoB | 762156 | p.Val784Ile | missense_variant | 0.21 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.21 |
rpoB | 762175 | c.2370_2372delTCG | disruptive_inframe_deletion | 0.16 |
rpoB | 762181 | c.2375_2376insGCC | disruptive_inframe_insertion | 0.15 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.15 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.12 |
rpoC | 762887 | c.-483G>C | upstream_gene_variant | 0.13 |
rpoB | 762909 | p.Ile1035Leu | missense_variant | 0.18 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.24 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.25 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 0.27 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.36 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.38 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.38 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 0.36 |
rpoB | 763005 | p.Cys1067Val | missense_variant | 0.37 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 0.38 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 0.39 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.38 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 0.4 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.4 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.39 |
rpoB | 763075 | p.Thr1090Ile | missense_variant | 0.37 |
rpoB | 763077 | p.Val1091Ser | missense_variant | 0.36 |
rpoC | 763088 | c.-282C>G | upstream_gene_variant | 0.37 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.32 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.25 |
rpoC | 763133 | c.-237G>C | upstream_gene_variant | 0.22 |
rpoC | 763136 | c.-234C>G | upstream_gene_variant | 0.19 |
rpoC | 763142 | c.-228C>G | upstream_gene_variant | 0.19 |
rpoC | 763148 | c.-222G>C | upstream_gene_variant | 0.18 |
rpoB | 763152 | p.Lys1116Arg | missense_variant | 0.18 |
rpoC | 763166 | c.-204A>G | upstream_gene_variant | 0.2 |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.2 |
rpoB | 763170 | p.Leu1122Met | missense_variant | 0.19 |
rpoC | 763187 | c.-183C>G | upstream_gene_variant | 0.17 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.14 |
rpoC | 763462 | c.93G>C | synonymous_variant | 0.2 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.21 |
rpoC | 763483 | c.114G>C | synonymous_variant | 0.21 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.21 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.21 |
rpoC | 763497 | p.Lys43Met | missense_variant | 0.23 |
rpoC | 763517 | p.Lys50Arg | missense_variant | 0.2 |
rpoC | 763528 | c.159G>T | synonymous_variant | 0.2 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.21 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.2 |
rpoC | 763537 | c.168C>G | synonymous_variant | 0.22 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.26 |
rpoC | 763555 | c.186C>T | synonymous_variant | 0.7 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.31 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.3 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.31 |
rpoC | 763609 | c.240C>G | synonymous_variant | 0.23 |
rpoC | 763614 | c.246_251delGACCCG | disruptive_inframe_deletion | 0.19 |
rpoC | 763622 | p.Ala85Thr | missense_variant | 0.18 |
rpoC | 763627 | c.258_259insTCCTCC | conservative_inframe_insertion | 0.18 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.2 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.2 |
rpoC | 763652 | p.Ile95Val | missense_variant | 0.2 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.19 |
rpoC | 763663 | c.294C>G | synonymous_variant | 0.2 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.2 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.14 |
rpoC | 764338 | p.Glu323Asp | missense_variant | 0.13 |
rpoC | 764359 | c.990C>G | synonymous_variant | 0.16 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.14 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.14 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.17 |
rpoC | 764500 | c.1131C>G | synonymous_variant | 0.14 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.14 |
rpoC | 764507 | p.Ala380Ser | missense_variant | 0.17 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.14 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.16 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.14 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.14 |
rpoC | 764545 | c.1176C>G | synonymous_variant | 0.19 |
rpoC | 764548 | c.1179G>C | synonymous_variant | 0.2 |
rpoC | 764551 | c.1182G>C | synonymous_variant | 0.26 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.29 |
rpoC | 764575 | c.1206T>C | synonymous_variant | 0.28 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.32 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.32 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.34 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.33 |
rpoC | 764623 | c.1254C>G | synonymous_variant | 0.29 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.28 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.27 |
rpoC | 764644 | c.1275G>C | synonymous_variant | 0.28 |
rpoC | 764646 | p.Gly426Ala | missense_variant | 0.28 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.28 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 0.28 |
rpoC | 764656 | c.1287C>G | synonymous_variant | 0.27 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.26 |
rpoC | 764663 | p.Val432Asn | missense_variant | 0.26 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.25 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.25 |
rpoC | 764705 | p.Leu446Gly | missense_variant | 0.22 |
rpoC | 764731 | c.1362G>C | synonymous_variant | 0.21 |
rpoC | 764737 | c.1368G>C | synonymous_variant | 0.19 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.16 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.17 |
rpoC | 764755 | p.Asp462Glu | missense_variant | 0.15 |
rpoC | 764760 | p.Asn464Ser | missense_variant | 0.13 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.14 |
rpoC | 764767 | c.1398G>C | synonymous_variant | 0.14 |
rpoC | 764774 | p.Ile469Val | missense_variant | 0.14 |
rpoC | 764780 | p.Ser471Ala | missense_variant | 0.14 |
rpoC | 764797 | c.1428G>C | synonymous_variant | 0.14 |
rpoC | 764804 | p.Gln479Ala | missense_variant | 0.14 |
rpoC | 764813 | p.Gln482Glu | missense_variant | 0.15 |
rpoC | 764818 | c.1449G>C | synonymous_variant | 0.16 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.16 |
rpoC | 764833 | c.1464A>G | synonymous_variant | 0.14 |
rpoC | 764869 | c.1500C>T | synonymous_variant | 0.12 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.12 |
rpoC | 764875 | c.1506C>G | synonymous_variant | 0.12 |
rpoC | 764887 | c.1518G>C | synonymous_variant | 0.11 |
rpoC | 764893 | c.1524T>C | synonymous_variant | 0.1 |
rpoC | 766488 | p.Pro1040Leu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 778979 | c.-74G>T | upstream_gene_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472092 | n.247C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472120 | n.275G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472279 | n.434T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472286 | n.441C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472287 | n.442C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472289 | n.444T>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472290 | n.445C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472293 | n.448C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472297 | n.453_465delGTCCGGGTTCTCT | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472312 | n.467_468insA | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472315 | n.470T>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472324 | n.479G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472325 | n.480G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472328 | n.483G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472582 | n.737G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472591 | n.746G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472674 | n.829T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472675 | n.830T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472791 | n.946G>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472840 | n.995A>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473026 | n.1181T>C | non_coding_transcript_exon_variant | 0.51 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473065 | n.1220C>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.52 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1473089 | n.1244A>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1473099 | n.1254T>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.49 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.49 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.49 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.49 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.51 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1473132 | n.1287T>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473286 | n.1441C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473292 | n.1447G>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1473391 | n.-267C>T | upstream_gene_variant | 0.11 |
rrl | 1473770 | n.113T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473789 | n.132G>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1473797 | n.140G>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1473806 | n.149C>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1473814 | n.157A>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1473815 | n.158T>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1473822 | n.165A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1473828 | n.171_172insCA | non_coding_transcript_exon_variant | 0.34 |
rrl | 1473871 | n.214T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473916 | n.259C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474135 | n.478G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474142 | n.485C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474155 | n.498G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474174 | n.517A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474201 | n.544T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474202 | n.545T>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1474266 | n.609T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474281 | n.624A>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1474316 | n.659T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474352 | n.696_699delACAT | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474359 | n.703_704insGTGG | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474466 | n.809G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474483 | n.826C>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474487 | n.830G>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474517 | n.860C>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474551 | n.894G>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474751 | n.1094G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474777 | n.1120T>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.37 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1475706 | n.2049A>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.39 |
rrl | 1475767 | n.2110G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475769 | n.2112_2113insTC | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.46 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475982 | n.2325G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475996 | n.2339T>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476026 | n.2369T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476251 | n.2594T>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476256 | n.2599A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476261 | n.2604A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476267 | n.2610G>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476268 | n.2611A>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476275 | n.2618T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476276 | n.2619C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476299 | n.2642C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476308 | n.2651G>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476443 | n.2786G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476455 | n.2798C>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476528 | n.2871A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476539 | n.2882A>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476572 | n.2915G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476573 | n.2916A>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.12 |
rpsA | 1833955 | c.414G>C | synonymous_variant | 0.14 |
rpsA | 1833959 | p.Leu140Val | missense_variant | 0.15 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.19 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.2 |
rpsA | 1833985 | c.444G>C | synonymous_variant | 0.25 |
rpsA | 1833988 | c.447C>G | synonymous_variant | 0.26 |
rpsA | 1833994 | c.453G>C | synonymous_variant | 0.26 |
rpsA | 1833997 | c.456G>C | synonymous_variant | 0.27 |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.3 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.28 |
rpsA | 1834034 | p.Ile165Val | missense_variant | 0.29 |
rpsA | 1834040 | p.Lys167Gln | missense_variant | 0.28 |
rpsA | 1834054 | c.513C>G | synonymous_variant | 0.27 |
rpsA | 1834093 | c.552G>C | synonymous_variant | 0.2 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.15 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.13 |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.16 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.16 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.16 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.15 |
rpsA | 1834307 | p.Asp256His | missense_variant | 0.11 |
rpsA | 1834390 | c.849G>C | synonymous_variant | 0.12 |
rpsA | 1834395 | p.Arg285Gln | missense_variant | 0.12 |
rpsA | 1834398 | p.His286Leu | missense_variant | 0.12 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.16 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.16 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.16 |
rpsA | 1834424 | p.Gln295Glu | missense_variant | 0.16 |
rpsA | 1834427 | p.Ile296Val | missense_variant | 0.17 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.16 |
rpsA | 1834451 | c.910_912delTTGinsCTC | synonymous_variant | 0.18 |
rpsA | 1834456 | c.915T>C | synonymous_variant | 0.16 |
rpsA | 1834459 | c.918G>C | synonymous_variant | 0.15 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.15 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.14 |
rpsA | 1834486 | p.Glu315Asp | missense_variant | 0.16 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.16 |
rpsA | 1834501 | c.960G>C | synonymous_variant | 0.16 |
rpsA | 1834523 | p.Glu328Gln | missense_variant | 0.16 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.38 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.17 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.18 |
rpoA | 3877881 | c.627G>C | synonymous_variant | 0.17 |
rpoA | 3877886 | p.Leu208Val | missense_variant | 0.17 |
rpoA | 3877896 | c.612G>C | synonymous_variant | 0.18 |
rpoA | 3877905 | p.Ser201Ala | missense_variant | 0.2 |
rpoA | 3877908 | p.Asn200Pro | missense_variant | 0.19 |
rpoA | 3877920 | c.588G>C | synonymous_variant | 0.19 |
rpoA | 3877926 | p.Leu194Val | missense_variant | 0.19 |
rpoA | 3877932 | c.576G>C | synonymous_variant | 0.18 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.17 |
rpoA | 3877968 | c.540C>G | synonymous_variant | 0.18 |
rpoA | 3877971 | p.Asp179Glu | missense_variant | 0.18 |
rpoA | 3877974 | c.534G>C | synonymous_variant | 0.17 |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.2 |
rpoA | 3877992 | c.516C>G | synonymous_variant | 0.18 |
rpoA | 3877998 | c.510G>C | synonymous_variant | 0.19 |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.13 |
clpC1 | 4039593 | p.Arg371Lys | missense_variant | 0.11 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |