lineage | Count |
---|---|
lineage2.2.1 | 10 |
31 | |
lineage4 | 53 |
lineage4.9 | 46 |
lineage4.5 | 3 |
lineage4.3.4.2.1 | 1 |
lineage4.7 | 1 |
lineage4.1.2 | 1 |
lineage4.1.2.1 | 7 |
lineage3 | 8 |
lineage2.2 | 3 |
lineage2.2.2 | 1 |
lineage4.8 | 2 |
lineage4.6.1.2 | 4 |
lineage2.2.1.2 | 2 |
lineage7;lineage2.2.1.2 | 1 |
lineage3.1.3 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage4;lineage2 | 1 |
lineage4.1.1.2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.3.3 | 1 |
lineage4.2.1 | 2 |
spoligotype | Count |
---|---|
None | 183 |
ID | Drug resistance | Lineage | Country iso2 | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046492 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | ERR4828628 | MDR-TB | lineage4.5 | None | SRR6046802 | Other | lineage4 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7496471 | Sensitive | None | SRR7496523 | Other | lineage4.7 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | ERR323037 | HR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR363446 | Sensitive | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4178226 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4798431 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359045 | HR-TB | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR9786076 | Sensitive | lineage3 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR736835 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR736856 | HR-TB | lineage4 | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR1173281 | RR-TB | lineage3 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR9786523 | Sensitive | lineage4.1.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173310 | MDR-TB | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1173740 | Other | None | SRR17658565 | Other | lineage3 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675270 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR4816466 | HR-TB | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4819462 | Other | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819933 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341330 | HR-TB | None | SRR5341456 | Other | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5535933 | HR-TB | None | SRR6045503 | HR-TB | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6045519 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045217 | Other | lineage4 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046046 | Other | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046299 | HR-TB | None |
---|