TB-Profiler result

Run: SRR5153091
Summary

Run ID: SRR5153091

Sample name:

Date: 04-04-2023 09:14:48

Number of reads: 2497639

Percentage reads mapped: 42.37

Strain: lineage4.3.3

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.3 Euro-American (LAM) mainly-LAM None 1.0
lineage4.3.3 Euro-American (LAM) LAM;T RD115 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
katG 2155693 p.Ser140Asn missense_variant 0.29 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6266 p.Pro343Gly missense_variant 0.15
gyrB 6298 c.1059C>T synonymous_variant 0.25
gyrB 6306 c.1067_1068insGAT disruptive_inframe_insertion 0.24
gyrA 6310 c.-992G>C upstream_gene_variant 0.24
gyrB 6312 p.Ile358Ser missense_variant 0.24
gyrB 6313 c.1075_1077delTCG conservative_inframe_deletion 0.25
gyrA 6328 c.-974C>T upstream_gene_variant 0.25
gyrA 6331 c.-971A>G upstream_gene_variant 0.24
gyrA 6334 c.-968G>C upstream_gene_variant 0.27
gyrA 6352 c.-950C>G upstream_gene_variant 0.21
gyrA 6362 c.-940T>C upstream_gene_variant 0.15
gyrA 6760 c.-542G>C upstream_gene_variant 0.19
gyrA 6763 c.-539G>C upstream_gene_variant 0.17
gyrB 6764 p.Leu509Phe missense_variant 0.17
gyrA 6775 c.-527G>T upstream_gene_variant 0.24
gyrA 6787 c.-515G>A upstream_gene_variant 0.22
gyrB 6798 p.Gly520Ala missense_variant 0.22
gyrA 6802 c.-500G>A upstream_gene_variant 0.24
gyrA 6811 c.-491C>T upstream_gene_variant 0.22
gyrA 6835 c.-467C>T upstream_gene_variant 0.17
gyrA 6844 c.-458T>C upstream_gene_variant 0.12
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8040 p.Gly247Ser missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491343 c.561C>G synonymous_variant 0.12
fgd1 491349 c.567T>C synonymous_variant 0.12
fgd1 491355 c.573C>A synonymous_variant 0.16
fgd1 491364 c.582T>C synonymous_variant 0.13
fgd1 491367 c.585G>C synonymous_variant 0.14
fgd1 491380 p.Glu200Met missense_variant 0.14
fgd1 491385 p.Glu201Asp missense_variant 0.13
rpoB 760172 c.366G>C synonymous_variant 0.2
rpoB 760181 c.375T>G synonymous_variant 0.21
rpoB 760184 c.378A>G synonymous_variant 0.21
rpoB 760185 c.379C>T synonymous_variant 0.21
rpoB 760199 c.393C>G synonymous_variant 0.26
rpoB 760223 c.417T>C synonymous_variant 0.28
rpoB 760235 c.429T>C synonymous_variant 0.29
rpoB 760244 c.438G>C synonymous_variant 0.25
rpoB 760253 c.447T>A synonymous_variant 0.23
rpoB 760256 c.450C>T synonymous_variant 0.22
rpoB 760274 p.Glu156Asp missense_variant 0.16
rpoB 760283 c.477G>C synonymous_variant 0.13
rpoB 760287 p.Ile161Val missense_variant 0.13
rpoB 760511 c.705G>C synonymous_variant 0.13
rpoB 760522 p.Ser239Asn missense_variant 0.14
rpoB 760527 p.Gln241Glu missense_variant 0.15
rpoB 760532 c.726T>C synonymous_variant 0.15
rpoB 760534 p.Val243Ala missense_variant 0.15
rpoB 760541 c.735G>T synonymous_variant 0.15
rpoB 760547 c.741G>C synonymous_variant 0.15
rpoB 760563 p.Arg253Met missense_variant 0.17
rpoB 760568 c.762G>C synonymous_variant 0.18
rpoB 760571 c.765G>C synonymous_variant 0.18
rpoB 760591 p.Val262Ala missense_variant 0.15
rpoB 760596 p.Thr264Gln missense_variant 0.15
rpoB 760616 c.810C>T synonymous_variant 0.12
rpoB 760625 c.819C>G synonymous_variant 0.17
rpoB 760646 c.840C>G synonymous_variant 0.15
rpoB 760655 c.849A>G synonymous_variant 0.14
rpoB 760658 c.852G>A synonymous_variant 0.14
rpoB 760661 c.855A>C synonymous_variant 0.15
rpoB 760670 c.864G>C synonymous_variant 0.14
rpoB 760673 c.867G>C synonymous_variant 0.12
rpoB 760676 p.Leu290Phe missense_variant 0.13
rpoB 760679 c.873A>G synonymous_variant 0.13
rpoB 760682 c.876C>T synonymous_variant 0.14
rpoB 760683 c.877T>C synonymous_variant 0.14
rpoB 761213 c.1407G>C synonymous_variant 0.15
rpoB 761234 c.1428G>C synonymous_variant 0.2
rpoB 761249 c.1443A>G synonymous_variant 0.22
rpoB 761255 c.1449T>G synonymous_variant 0.18
rpoB 761258 c.1452G>A synonymous_variant 0.18
rpoB 761261 c.1455G>C synonymous_variant 0.18
rpoB 761264 c.1458C>G synonymous_variant 0.18
rpoB 761273 c.1467T>C synonymous_variant 0.23
rpoB 761288 c.1482G>C synonymous_variant 0.27
rpoB 761289 p.Ser495Ala missense_variant 0.27
rpoB 761294 c.1488G>A synonymous_variant 0.32
rpoB 761318 c.1512G>C synonymous_variant 0.27
rpoB 761327 c.1521A>G synonymous_variant 0.26
rpoB 761339 c.1533C>G synonymous_variant 0.27
rpoB 761345 c.1539G>C synonymous_variant 0.27
rpoB 761346 p.Val514Ile missense_variant 0.27
rpoB 761355 p.Val517Leu missense_variant 0.26
rpoB 761360 c.1554T>C synonymous_variant 0.24
rpoB 761362 p.Ser519Thr missense_variant 0.25
rpoB 761370 p.Ile522Val missense_variant 0.24
rpoB 761558 c.1752C>G synonymous_variant 0.2
rpoB 761564 c.1758G>C synonymous_variant 0.2
rpoB 761570 c.1764T>C synonymous_variant 0.19
rpoB 761573 c.1767C>G synonymous_variant 0.22
rpoB 761579 c.1773G>C synonymous_variant 0.25
rpoB 761582 c.1776G>A synonymous_variant 0.27
rpoB 761612 c.1806G>C synonymous_variant 0.34
rpoB 761615 c.1809A>G synonymous_variant 0.35
rpoB 761627 c.1821C>T synonymous_variant 0.38
rpoB 761633 c.1827G>C synonymous_variant 0.38
rpoB 761643 p.Val613Ile missense_variant 0.36
rpoB 761649 c.1843_1844delAGinsTC synonymous_variant 0.29
rpoB 761657 c.1851C>G synonymous_variant 0.25
rpoB 761660 c.1854G>C synonymous_variant 0.24
rpoB 761661 p.Leu619Val missense_variant 0.24
rpoB 761675 c.1869G>T synonymous_variant 0.16
rpoB 761778 p.Asn658Asp missense_variant 0.13
rpoB 762002 c.2196C>G synonymous_variant 0.15
rpoB 762003 p.Asn733Gln missense_variant 0.17
rpoB 762011 c.2205G>C synonymous_variant 0.19
rpoB 762014 c.2208C>G synonymous_variant 0.18
rpoB 762017 c.2211A>G synonymous_variant 0.17
rpoB 762020 p.Glu738Asp missense_variant 0.14
rpoB 762026 c.2220G>C synonymous_variant 0.19
rpoB 762041 c.2235C>T synonymous_variant 0.24
rpoB 762047 c.2241G>A synonymous_variant 0.21
rpoB 762053 c.2247T>C synonymous_variant 0.24
rpoB 762062 c.2256T>C synonymous_variant 0.22
rpoB 762065 c.2259T>C synonymous_variant 0.21
rpoB 762068 c.2262C>T synonymous_variant 0.21
rpoB 762083 c.2277T>C synonymous_variant 0.19
rpoB 762086 c.2280G>C synonymous_variant 0.19
rpoB 762101 c.2295C>G synonymous_variant 0.22
rpoB 762104 c.2298C>T synonymous_variant 0.22
rpoB 762114 p.Ile770Val missense_variant 0.29
rpoB 762131 c.2325C>G synonymous_variant 0.28
rpoB 762137 c.2331C>T synonymous_variant 0.27
rpoB 762143 c.2337T>C synonymous_variant 0.27
rpoB 762161 c.2355C>T synonymous_variant 0.27
rpoB 762176 c.2370T>C synonymous_variant 0.32
rpoB 762185 c.2379G>C synonymous_variant 0.3
rpoB 762188 c.2382C>T synonymous_variant 0.31
rpoB 762221 c.2415G>A synonymous_variant 0.35
rpoB 762233 c.2427G>C synonymous_variant 0.4
rpoB 762236 c.2430G>C synonymous_variant 0.43
rpoB 762254 c.2448T>C synonymous_variant 0.47
rpoB 762257 c.2451C>G synonymous_variant 0.47
rpoB 762275 c.2469C>G synonymous_variant 0.45
rpoB 762290 c.2484C>T synonymous_variant 0.4
rpoB 762293 c.2487T>C synonymous_variant 0.39
rpoB 762329 c.2523G>C synonymous_variant 0.28
rpoB 762335 c.2529C>T synonymous_variant 0.25
rpoB 762338 c.2532T>C synonymous_variant 0.17
rpoB 762347 c.2541T>C synonymous_variant 0.14
rpoC 762383 c.-987C>G upstream_gene_variant 0.14
rpoC 762395 c.-975G>C upstream_gene_variant 0.19
rpoC 762398 c.-972T>G upstream_gene_variant 0.18
rpoC 762404 c.-966T>C upstream_gene_variant 0.18
rpoC 762407 c.-963G>C upstream_gene_variant 0.17
rpoC 762410 c.-960T>G upstream_gene_variant 0.19
rpoC 762416 c.-954A>G upstream_gene_variant 0.18
rpoB 762426 p.Ser874Gln missense_variant 0.19
rpoC 762434 c.-936T>C upstream_gene_variant 0.21
rpoC 762470 c.-900G>T upstream_gene_variant 0.26
rpoB 762489 p.Val895Thr missense_variant 0.18
rpoC 762497 c.-873C>T upstream_gene_variant 0.19
rpoC 762509 c.-861T>G upstream_gene_variant 0.19
rpoB 762510 p.Ala902Pro missense_variant 0.19
rpoC 762527 c.-843G>C upstream_gene_variant 0.15
rpoC 762536 c.-834T>C upstream_gene_variant 0.13
rpoC 762854 c.-516G>C upstream_gene_variant 0.14
rpoC 762857 c.-513C>G upstream_gene_variant 0.14
rpoB 762858 p.Thr1018Ala missense_variant 0.14
rpoC 762863 c.-507T>C upstream_gene_variant 0.15
rpoB 762879 p.Met1025Leu missense_variant 0.19
rpoC 762899 c.-471G>C upstream_gene_variant 0.23
rpoC 762920 c.-450C>T upstream_gene_variant 0.38
rpoC 762923 c.-447C>G upstream_gene_variant 0.42
rpoC 762929 c.-441G>C upstream_gene_variant 0.46
rpoC 762947 c.-423C>G upstream_gene_variant 0.46
rpoC 762962 c.-408C>T upstream_gene_variant 0.49
rpoC 762983 c.-387C>T upstream_gene_variant 0.6
rpoC 762989 c.-381G>T upstream_gene_variant 0.59
rpoC 762995 c.-375G>C upstream_gene_variant 0.6
rpoC 762998 c.-372G>A upstream_gene_variant 0.57
rpoC 763004 c.-366G>A upstream_gene_variant 0.54
rpoC 763025 c.-345C>T upstream_gene_variant 0.36
rpoC 763028 c.-342T>C upstream_gene_variant 0.33
rpoC 763031 c.-339T>C upstream_gene_variant 0.34
rpoC 763049 c.-321G>A upstream_gene_variant 0.3
rpoC 763053 c.-317T>C upstream_gene_variant 0.26
rpoC 763070 c.-300T>C upstream_gene_variant 0.19
rpoB 763074 p.Thr1090Val missense_variant 0.18
rpoC 763079 c.-291C>G upstream_gene_variant 0.18
rpoC 763085 c.-285C>G upstream_gene_variant 0.18
rpoC 763088 c.-282C>G upstream_gene_variant 0.19
rpoC 763094 c.-276G>C upstream_gene_variant 0.23
rpoC 763115 c.-255T>C upstream_gene_variant 0.22
rpoC 763124 c.-246C>T upstream_gene_variant 0.21
rpoC 763139 c.-231C>T upstream_gene_variant 0.18
rpoC 763142 c.-228C>G upstream_gene_variant 0.17
rpoC 763145 c.-225G>A upstream_gene_variant 0.15
rpoC 763157 c.-213G>T upstream_gene_variant 0.14
rpoC 763166 c.-204A>G upstream_gene_variant 0.13
rpoC 763172 c.-198G>C upstream_gene_variant 0.14
rpoC 763468 c.99G>C synonymous_variant 0.14
rpoC 763486 c.117T>C synonymous_variant 0.19
rpoC 763501 c.132C>T synonymous_variant 0.25
rpoC 763505 c.136C>T synonymous_variant 0.27
rpoC 763528 c.159G>T synonymous_variant 0.31
rpoC 763531 c.162G>C synonymous_variant 0.32
rpoC 763534 c.165T>C synonymous_variant 0.32
rpoC 763537 c.168C>G synonymous_variant 0.32
rpoC 763546 c.177A>G synonymous_variant 0.37
rpoC 763558 c.189C>T synonymous_variant 0.41
rpoC 763561 c.192G>A synonymous_variant 0.41
rpoC 763570 c.201G>C synonymous_variant 0.4
rpoC 763573 c.204G>C synonymous_variant 0.4
rpoC 763594 c.225C>T synonymous_variant 0.37
rpoC 763633 c.264T>C synonymous_variant 0.28
rpoC 763648 c.279C>T synonymous_variant 0.28
rpoC 763651 c.282C>T synonymous_variant 0.25
rpoC 763660 c.291T>G synonymous_variant 0.16
rpoC 763666 c.297G>C synonymous_variant 0.18
rpoC 763669 c.300C>G synonymous_variant 0.17
rpoC 763702 c.333C>G synonymous_variant 0.14
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.14
rpoC 763711 c.342G>C synonymous_variant 0.14
rpoC 763714 c.345G>T synonymous_variant 0.13
rpoC 763717 c.348T>C synonymous_variant 0.13
rpoC 763723 c.354G>C synonymous_variant 0.15
rpoC 763732 c.363C>G synonymous_variant 0.15
rpoC 763741 c.372C>T synonymous_variant 0.15
rpoC 763747 c.378G>A synonymous_variant 0.14
rpoC 764059 c.690G>T synonymous_variant 0.18
rpoC 764077 c.708C>G synonymous_variant 0.17
rpoC 764083 c.714A>G synonymous_variant 0.17
rpoC 764084 p.Asn239Val missense_variant 0.16
rpoC 764101 c.732C>G synonymous_variant 0.18
rpoC 764102 p.Val245Gln missense_variant 0.18
rpoC 764131 c.762T>C synonymous_variant 0.16
rpoC 764134 c.765C>G synonymous_variant 0.15
rpoC 764140 c.771C>T synonymous_variant 0.16
rpoC 764338 c.969G>A synonymous_variant 0.15
rpoC 764344 c.975C>G synonymous_variant 0.15
rpoC 764353 c.984G>T synonymous_variant 0.15
rpoC 764365 c.996C>T synonymous_variant 0.17
rpoC 764380 c.1011G>C synonymous_variant 0.29
rpoC 764387 c.1018T>C synonymous_variant 0.29
rpoC 764398 c.1029G>C synonymous_variant 0.24
rpoC 764404 c.1035C>T synonymous_variant 0.21
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.22
rpoC 764428 c.1059G>C synonymous_variant 0.28
rpoC 764431 c.1062G>C synonymous_variant 0.26
rpoC 764434 c.1065A>G synonymous_variant 0.26
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.27
rpoC 764446 c.1077T>C synonymous_variant 0.34
rpoC 764449 c.1080G>C synonymous_variant 0.33
rpoC 764458 c.1089G>C synonymous_variant 0.4
rpoC 764461 c.1092A>G synonymous_variant 0.38
rpoC 764521 c.1152T>C synonymous_variant 0.55
rpoC 764527 c.1158C>T synonymous_variant 0.55
rpoC 764539 c.1170C>G synonymous_variant 0.54
rpoC 764548 c.1179G>C synonymous_variant 0.51
rpoC 764560 c.1191T>C synonymous_variant 0.53
rpoC 764566 c.1197C>G synonymous_variant 0.54
rpoC 764575 c.1206T>G synonymous_variant 0.52
rpoC 764578 c.1209C>G synonymous_variant 0.52
rpoC 764626 c.1257C>T synonymous_variant 0.36
rpoC 764644 c.1275G>C synonymous_variant 0.33
rpoC 764650 c.1281G>T synonymous_variant 0.33
rpoC 764662 c.1293G>C synonymous_variant 0.32
rpoC 764677 c.1308C>G synonymous_variant 0.31
rpoC 764680 c.1311G>A synonymous_variant 0.3
rpoC 764686 c.1317C>T synonymous_variant 0.31
rpoC 764701 c.1332C>G synonymous_variant 0.3
rpoC 764752 c.1383G>C synonymous_variant 0.27
rpoC 764755 c.1386C>T synonymous_variant 0.29
rpoC 764764 c.1395T>C synonymous_variant 0.28
rpoC 764779 c.1410G>A synonymous_variant 0.25
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.27
rpoC 764785 c.1416C>G synonymous_variant 0.27
rpoC 764791 c.1422C>G synonymous_variant 0.27
rpoC 764803 c.1434C>G synonymous_variant 0.3
rpoC 764809 c.1440C>G synonymous_variant 0.3
rpoC 764812 c.1443C>G synonymous_variant 0.3
rpoC 764815 c.1446A>G synonymous_variant 0.31
rpoC 764827 c.1458G>C synonymous_variant 0.32
rpoC 764851 c.1482C>T synonymous_variant 0.31
rpoC 764854 c.1485G>T synonymous_variant 0.3
rpoC 764858 c.1489T>C synonymous_variant 0.33
rpoC 764869 c.1500C>T synonymous_variant 0.38
rpoC 764872 c.1503A>G synonymous_variant 0.38
rpoC 764875 c.1506C>G synonymous_variant 0.36
rpoC 764887 c.1518G>C synonymous_variant 0.35
rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 0.35
rpoC 764911 c.1542A>G synonymous_variant 0.46
rpoC 764912 p.Met515Gln missense_variant 0.45
rpoC 764935 c.1566T>C synonymous_variant 0.42
rpoC 764948 c.1579T>C synonymous_variant 0.36
rpoC 764953 c.1584G>C synonymous_variant 0.36
rpoC 764968 c.1599T>C synonymous_variant 0.28
rpoC 764995 c.1626C>G synonymous_variant 0.79
rpoC 765007 c.1638T>G synonymous_variant 0.13
rpoC 765008 c.1639T>C synonymous_variant 0.13
rpoC 765011 p.Ser548Trp missense_variant 0.12
rpoC 765016 c.1647C>G synonymous_variant 0.12
rpoC 765751 c.2382C>G synonymous_variant 0.14
rpoC 765753 p.Asp795Ala missense_variant 0.18
rpoC 765757 c.2388C>T synonymous_variant 0.18
rpoC 765772 c.2403C>G synonymous_variant 0.24
rpoC 765781 c.2412C>T synonymous_variant 0.27
rpoC 765784 c.2415C>G synonymous_variant 0.29
rpoC 765793 c.2424C>G synonymous_variant 0.29
rpoC 765796 c.2427C>T synonymous_variant 0.29
rpoC 765811 c.2442T>C synonymous_variant 0.28
rpoC 765814 c.2445A>T synonymous_variant 0.28
rpoC 765817 c.2448G>C synonymous_variant 0.28
rpoC 765820 c.2451G>C synonymous_variant 0.29
rpoC 765823 c.2454C>G synonymous_variant 0.29
rpoC 765844 c.2475C>G synonymous_variant 0.46
rpoC 765871 c.2502T>G synonymous_variant 0.4
rpoC 765875 p.Val836Ile missense_variant 0.4
rpoC 765886 c.2517C>G synonymous_variant 0.38
rpoC 765907 c.2538G>T synonymous_variant 0.35
rpoC 765910 c.2541G>C synonymous_variant 0.36
rpoC 765934 c.2565C>T synonymous_variant 0.29
rpoC 765940 c.2571A>T synonymous_variant 0.26
rpoC 765946 c.2577C>T synonymous_variant 0.19
rpoC 765947 c.2578T>C synonymous_variant 0.18
rpoC 765952 c.2583G>C synonymous_variant 0.17
rpoC 765955 c.2586C>T synonymous_variant 0.18
rpoC 765961 c.2592G>C synonymous_variant 0.19
rpoC 765962 c.2593T>C synonymous_variant 0.2
rpoC 765967 c.2598C>T synonymous_variant 0.24
rpoC 765979 c.2610C>G synonymous_variant 0.23
rpoC 765982 c.2613C>T synonymous_variant 0.24
rpoC 765994 c.2625A>T synonymous_variant 0.17
rpoC 766009 c.2640G>C synonymous_variant 0.14
rpoC 766363 c.2994G>C synonymous_variant 0.18
rpoC 766381 c.3012C>T synonymous_variant 0.27
rpoC 766384 c.3015A>G synonymous_variant 0.29
rpoC 766390 c.3021C>T synonymous_variant 0.3
rpoC 766408 c.3039C>T synonymous_variant 0.27
rpoC 766429 c.3061_3062insCGG disruptive_inframe_insertion 0.28
rpoC 766435 p.Glu1022Asp missense_variant 0.24
rpoC 766447 c.3078T>C synonymous_variant 0.23
rpoC 766456 c.3087C>G synonymous_variant 0.17
rpoC 766459 c.3090G>T synonymous_variant 0.15
rpoC 766738 c.3369G>C synonymous_variant 0.16
rpoC 766742 p.Gln1125Met missense_variant 0.16
rpoC 766753 c.3384C>G synonymous_variant 0.22
rpoC 766754 p.Glu1129Gln missense_variant 0.22
rpoC 766765 c.3396A>C synonymous_variant 0.27
rpoC 766774 c.3405T>C synonymous_variant 0.28
rpoC 766776 p.Arg1136His missense_variant 0.28
rpoC 766799 p.Ala1144Ser missense_variant 0.33
rpoC 766804 c.3435A>G synonymous_variant 0.37
rpoC 766837 c.3468G>C synonymous_variant 0.2
rpoC 766843 c.3474T>C synonymous_variant 0.17
rpoC 766975 c.3606C>G synonymous_variant 0.17
rpoC 766978 c.3609C>A synonymous_variant 0.18
rpoC 766987 c.3618G>A synonymous_variant 0.29
rpoC 766996 c.3627C>T synonymous_variant 0.42
rpoC 767002 c.3633G>C synonymous_variant 0.4
rpoC 767023 c.3654C>T synonymous_variant 0.4
rpoC 767044 c.3675G>C synonymous_variant 0.5
rpoC 767059 c.3690T>C synonymous_variant 0.43
rpoC 767062 c.3693C>A synonymous_variant 0.43
rpoC 767065 c.3696G>A synonymous_variant 0.43
rpoC 767071 c.3702C>G synonymous_variant 0.47
rpoC 767092 c.3723C>T synonymous_variant 0.3
rpoC 767093 c.3724_3725delAGinsTC synonymous_variant 0.3
rpoC 767098 c.3729T>C synonymous_variant 0.26
rpoC 767100 p.Lys1244Arg missense_variant 0.27
rpoC 767106 p.Asn1246Ile missense_variant 0.24
rpoC 767110 c.3741T>C synonymous_variant 0.26
rpoC 767113 c.3744G>C synonymous_variant 0.29
rpoC 767119 c.3750A>G synonymous_variant 0.28
rpoC 767134 c.3765C>T synonymous_variant 0.24
rpoC 767167 c.3798C>G synonymous_variant 0.12
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781628 c.69T>C synonymous_variant 0.18
rpsL 781631 c.72G>C synonymous_variant 0.18
rpsL 781637 c.78C>G synonymous_variant 0.19
rpsL 781655 c.96T>C synonymous_variant 0.16
rpsL 781658 c.99A>G synonymous_variant 0.15
rpsL 781802 c.243G>C synonymous_variant 0.14
rpsL 781805 c.246G>C synonymous_variant 0.14
rpsL 781814 c.255C>T synonymous_variant 0.17
rpsL 781817 c.258G>T synonymous_variant 0.16
rpsL 781829 c.270G>C synonymous_variant 0.17
rpsL 781832 c.273T>C synonymous_variant 0.16
rpsL 781835 c.276T>C synonymous_variant 0.16
rpsL 781841 c.282C>T synonymous_variant 0.16
rpsL 781853 c.294C>T synonymous_variant 0.19
rpsL 781865 c.306G>C synonymous_variant 0.16
rpsL 781868 c.309T>C synonymous_variant 0.16
rpsL 781871 c.312G>C synonymous_variant 0.15
rplC 801174 c.366T>C synonymous_variant 0.13
rplC 801195 c.387G>C synonymous_variant 0.12
rplC 801220 p.Ser138Cys missense_variant 0.14
fbiC 1303095 c.165G>A synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.35
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.35
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.34
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.35
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.33
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.34
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.34
rrs 1471943 n.98T>C non_coding_transcript_exon_variant 0.35
rrs 1471978 n.133C>T non_coding_transcript_exon_variant 0.23
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.2
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.19
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.44
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.44
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.54
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.54
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.54
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 0.45
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.38
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.13
rrs 1472486 n.641A>G non_coding_transcript_exon_variant 0.14
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.13
rrs 1472497 n.652G>T non_coding_transcript_exon_variant 0.4
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.47
rrs 1472580 n.735C>A non_coding_transcript_exon_variant 0.59
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.63
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.68
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.62
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.62
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.29
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.62
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.62
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.64
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.63
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.67
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.65
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.62
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.62
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.62
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.61
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.6
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.61
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.62
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.61
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.52
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.52
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.54
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.27
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.28
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.29
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.4
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.5
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.53
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.54
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.55
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.61
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.61
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.57
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.57
rrl 1473822 n.165A>G non_coding_transcript_exon_variant 0.52
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.44
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.44
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.53
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.38
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.38
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.39
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.35
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.35
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.32
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.32
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.33
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.26
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.29
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.37
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.45
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.48
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.48
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.49
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.49
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.46
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.35
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.13
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.13
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.14
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.14
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.14
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.15
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.16
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.24
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.23
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.2
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.35
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.33
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.38
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.39
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.5
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.29
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.26
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.25
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.25
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.25
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.13
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.35
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.41
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.43
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.45
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.47
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.46
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.46
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.47
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.47
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.51
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.35
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.3
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.29
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.26
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.22
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.25
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.23
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.23
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.27
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.27
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.29
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.33
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.4
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.4
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.42
rrl 1475422 n.1765A>G non_coding_transcript_exon_variant 0.15
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.29
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.41
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.44
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.44
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.45
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.45
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.45
rrl 1475481 n.1824C>G non_coding_transcript_exon_variant 0.43
rrl 1475482 n.1825A>G non_coding_transcript_exon_variant 0.44
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.42
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.38
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.34
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.23
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.23
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.23
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.2
rrl 1475555 n.1898T>C non_coding_transcript_exon_variant 0.17
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.14
rrl 1475655 n.1998T>A non_coding_transcript_exon_variant 0.16
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.2
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.22
rrl 1475735 n.2078T>C non_coding_transcript_exon_variant 0.45
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.36
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.32
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.33
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.37
rrl 1475791 n.2134A>G non_coding_transcript_exon_variant 0.46
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.7
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.69
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.73
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.7
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.71
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.59
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.58
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.55
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.33
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.3
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.3
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.3
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.3
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.29
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.29
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.3
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.32
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.32
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.45
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.46
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.46
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.46
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.44
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.46
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.49
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.6
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.64
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.62
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.64
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.63
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.52
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.5
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.49
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.49
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.42
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 0.37
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.37
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.37
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.4
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.49
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.43
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.43
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.42
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.41
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.47
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.61
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.52
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.52
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.45
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.43
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.41
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.42
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.42
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.39
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.39
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.38
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.38
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.38
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.38
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.25
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.22
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.21
rpsA 1833571 c.30A>G synonymous_variant 0.15
rpsA 1833580 c.39C>T synonymous_variant 0.15
rpsA 1833589 c.48A>C synonymous_variant 0.15
rpsA 1833595 c.54T>C synonymous_variant 0.15
rpsA 1833596 p.Ser19Ala missense_variant 0.15
rpsA 1833604 c.63C>T synonymous_variant 0.16
rpsA 1833607 c.66T>C synonymous_variant 0.15
rpsA 1833616 c.75A>C synonymous_variant 0.17
rpsA 1833619 c.78A>C synonymous_variant 0.16
rpsA 1833623 p.Lys28Ala missense_variant 0.17
rpsA 1833646 c.105T>C synonymous_variant 0.21
rpsA 1833652 c.111C>T synonymous_variant 0.14
rpsA 1833769 c.228C>G synonymous_variant 0.15
rpsA 1833787 c.246C>G synonymous_variant 0.17
rpsA 1833790 c.249T>C synonymous_variant 0.18
rpsA 1833793 c.252C>T synonymous_variant 0.17
rpsA 1833799 c.258C>G synonymous_variant 0.19
rpsA 1833802 c.261A>G synonymous_variant 0.21
rpsA 1833808 c.267G>T synonymous_variant 0.26
rpsA 1833811 c.270G>C synonymous_variant 0.28
rpsA 1833835 c.294C>T synonymous_variant 0.38
rpsA 1833838 c.297G>C synonymous_variant 0.35
rpsA 1833841 c.300C>G synonymous_variant 0.35
rpsA 1833847 c.306C>G synonymous_variant 0.38
rpsA 1833856 c.315A>G synonymous_variant 0.38
rpsA 1833859 c.318C>G synonymous_variant 0.37
rpsA 1833862 c.321G>T synonymous_variant 0.37
rpsA 1833874 c.333T>C synonymous_variant 0.41
rpsA 1833886 c.345C>G synonymous_variant 0.4
rpsA 1833894 p.Ala118Glu missense_variant 0.43
rpsA 1833919 c.378C>T synonymous_variant 0.29
rpsA 1833920 p.Lys127Arg missense_variant 0.29
rpsA 1833928 c.387G>T synonymous_variant 0.31
rpsA 1833931 c.390C>G synonymous_variant 0.3
rpsA 1833949 c.408T>C synonymous_variant 0.29
rpsA 1833952 c.411C>T synonymous_variant 0.29
rpsA 1833964 c.423C>T synonymous_variant 0.35
rpsA 1833970 c.429G>T synonymous_variant 0.36
rpsA 1833979 c.438T>C synonymous_variant 0.37
rpsA 1833991 c.450C>G synonymous_variant 0.37
rpsA 1834000 c.459G>C synonymous_variant 0.32
rpsA 1834012 c.471G>C synonymous_variant 0.34
rpsA 1834015 c.474G>C synonymous_variant 0.35
rpsA 1834021 c.480C>T synonymous_variant 0.4
rpsA 1834030 c.489C>G synonymous_variant 0.43
rpsA 1834034 p.Ile165Val missense_variant 0.43
rpsA 1834093 c.552G>T synonymous_variant 0.29
rpsA 1834099 c.558C>G synonymous_variant 0.31
rpsA 1834117 c.576G>A synonymous_variant 0.29
rpsA 1834189 c.648G>C synonymous_variant 0.13
rpsA 1834195 c.654G>C synonymous_variant 0.18
rpsA 1834213 c.672G>C synonymous_variant 0.2
rpsA 1834234 c.693G>C synonymous_variant 0.21
rpsA 1834249 c.708T>C synonymous_variant 0.29
rpsA 1834261 c.720A>G synonymous_variant 0.33
rpsA 1834264 c.723G>C synonymous_variant 0.33
rpsA 1834279 c.738C>T synonymous_variant 0.27
rpsA 1834294 c.753G>C synonymous_variant 0.2
rpsA 1834298 p.Gln253Glu missense_variant 0.19
rpsA 1834303 c.762T>G synonymous_variant 0.17
rpsA 1834306 c.765T>C synonymous_variant 0.18
rpsA 1834307 p.Asp256Thr missense_variant 0.17
rpsA 1834327 c.786G>C synonymous_variant 0.23
rpsA 1834340 p.Met267Leu missense_variant 0.23
rpsA 1834348 c.807T>C synonymous_variant 0.22
rpsA 1834354 c.813G>T synonymous_variant 0.23
rpsA 1834357 c.816T>C synonymous_variant 0.22
rpsA 1834361 c.820T>C synonymous_variant 0.21
rpsA 1834366 c.825A>G synonymous_variant 0.21
rpsA 1834369 c.828C>G synonymous_variant 0.21
rpsA 1834375 c.834G>C synonymous_variant 0.2
rpsA 1834378 c.837T>C synonymous_variant 0.19
rpsA 1834387 c.846C>T synonymous_variant 0.22
rpsA 1834399 p.His286Gln missense_variant 0.26
rpsA 1834408 c.867C>T synonymous_variant 0.23
rpsA 1834411 c.870T>C synonymous_variant 0.23
rpsA 1834417 c.876G>C synonymous_variant 0.3
rpsA 1834423 c.882G>C synonymous_variant 0.31
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.39
rpsA 1834456 c.915T>C synonymous_variant 0.39
rpsA 1834465 c.924T>C synonymous_variant 0.39
rpsA 1834468 c.927A>G synonymous_variant 0.39
rpsA 1834489 c.948T>C synonymous_variant 0.48
rpsA 1834516 c.975G>A synonymous_variant 0.44
rpsA 1834528 c.987T>C synonymous_variant 0.39
rpsA 1834534 c.993C>G synonymous_variant 0.36
rpsA 1834540 c.999G>C synonymous_variant 0.3
rpsA 1834543 c.1002C>G synonymous_variant 0.28
rpsA 1834546 c.1005T>C synonymous_variant 0.26
rpsA 1834552 c.1011G>C synonymous_variant 0.25
rpsA 1834555 c.1014T>G synonymous_variant 0.24
rpsA 1834557 p.Ala339Val missense_variant 0.24
rpsA 1834591 c.1050C>T synonymous_variant 0.26
rpsA 1834597 c.1056C>T synonymous_variant 0.25
rpsA 1834606 c.1065C>T synonymous_variant 0.13
rpsA 1834609 c.1068T>C synonymous_variant 0.13
rpsA 1834622 p.Ser361Thr missense_variant 0.12
rpsA 1834639 c.1098T>C synonymous_variant 0.14
rpsA 1834654 p.Glu371Asp missense_variant 0.12
rpsA 1834663 c.1122C>T synonymous_variant 0.25
rpsA 1834667 p.Ala376Ser missense_variant 0.26
rpsA 1834690 c.1149T>C synonymous_variant 0.32
rpsA 1834733 p.Ala398Pro missense_variant 0.38
rpsA 1834738 c.1197A>G synonymous_variant 0.4
rpsA 1834753 c.1212T>C synonymous_variant 0.42
rpsA 1834759 c.1218A>C synonymous_variant 0.41
rpsA 1834765 p.Glu408Asp missense_variant 0.39
rpsA 1834776 p.Ala412Glu missense_variant 0.37
rpsA 1834780 c.1239A>G synonymous_variant 0.36
rpsA 1834788 p.Ala416Gly missense_variant 0.35
rpsA 1834792 c.1251G>C synonymous_variant 0.35
rpsA 1834804 c.1263C>G synonymous_variant 0.33
rpsA 1834836 p.Met432Thr missense_variant 0.77
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155632 c.480A>C synonymous_variant 0.19
katG 2155635 c.477C>G synonymous_variant 0.14
katG 2155638 c.474G>A synonymous_variant 0.19
katG 2155659 c.453C>G synonymous_variant 0.24
katG 2155680 c.432G>C synonymous_variant 0.19
katG 2155691 c.421T>C synonymous_variant 0.36
katG 2155696 p.Ala139Gly missense_variant 0.35
katG 2155716 c.396T>G synonymous_variant 0.33
katG 2155735 p.Met126Gln missense_variant 0.23
katG 2155740 c.372C>T synonymous_variant 0.21
katG 2155743 c.369G>C synonymous_variant 0.21
katG 2155746 p.Ala122Gly missense_variant 0.22
katG 2155758 c.354C>A synonymous_variant 0.23
katG 2155765 p.His116Ile missense_variant 0.24
katG 2155768 p.Ile115Thr missense_variant 0.23
katG 2155785 p.Ala109Ser missense_variant 0.22
katG 2155794 c.318G>C synonymous_variant 0.14
katG 2156196 c.-85C>T upstream_gene_variant 0.98
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518919 p.Gly269Ser missense_variant 1.0
folC 2746340 p.Ala420Val missense_variant 1.0
pepQ 2859739 p.Ala227Gly missense_variant 0.11
pepQ 2859750 c.669C>T synonymous_variant 0.12
pepQ 2859756 c.663C>T synonymous_variant 0.12
pepQ 2859778 p.Val214Ala missense_variant 0.14
pepQ 2859781 p.Gln213Ala missense_variant 0.14
pepQ 2859789 c.630G>C synonymous_variant 0.16
pepQ 2859798 c.621G>C synonymous_variant 0.11
thyA 3073868 p.Thr202Ala missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3877587 c.921A>C synonymous_variant 0.15
rpoA 3877600 p.Gln303Ala missense_variant 0.2
rpoA 3877613 p.Ile299Val missense_variant 0.29
rpoA 3877617 c.891G>C synonymous_variant 0.3
rpoA 3877638 c.870T>C synonymous_variant 0.33
rpoA 3877647 c.861C>T synonymous_variant 0.31
rpoA 3877653 c.855C>T synonymous_variant 0.31
rpoA 3877656 c.852T>G synonymous_variant 0.31
rpoA 3877662 c.846C>T synonymous_variant 0.32
rpoA 3877665 c.843C>G synonymous_variant 0.33
rpoA 3877674 c.834C>T synonymous_variant 0.31
rpoA 3877686 c.822A>G synonymous_variant 0.29
rpoA 3877692 c.816G>C synonymous_variant 0.27
rpoA 3877704 c.804G>T synonymous_variant 0.2
rpoA 3877881 c.627G>C synonymous_variant 0.15
rpoA 3877884 c.624G>C synonymous_variant 0.14
rpoA 3877893 c.615C>G synonymous_variant 0.17
rpoA 3877896 p.Pro204Ala missense_variant 0.16
rpoA 3877905 c.603A>C synonymous_variant 0.19
rpoA 3877908 c.600T>C synonymous_variant 0.19
rpoA 3877926 c.582G>C synonymous_variant 0.17
rpoA 3877932 c.576G>C synonymous_variant 0.17
rpoA 3877936 p.Lys191Arg missense_variant 0.17
rpoA 3877962 c.546G>T synonymous_variant 0.16
rpoA 3877971 p.Asp179Glu missense_variant 0.13
rpoA 3877974 c.534G>C synonymous_variant 0.12
rpoA 3878217 c.291A>G synonymous_variant 0.12
rpoA 3878244 c.264G>A synonymous_variant 0.23
rpoA 3878247 c.261G>C synonymous_variant 0.23
rpoA 3878256 c.252G>C synonymous_variant 0.24
rpoA 3878264 p.Ser82Gly missense_variant 0.25
rpoA 3878271 c.237T>C synonymous_variant 0.25
rpoA 3878283 p.Glu75Asp missense_variant 0.26
rpoA 3878298 c.210A>G synonymous_variant 0.23
rpoA 3878301 c.207C>G synonymous_variant 0.18
rpoA 3878304 c.204G>C synonymous_variant 0.18
rpoA 3878313 c.195G>C synonymous_variant 0.18
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4038740 c.1965G>C synonymous_variant 0.15
clpC1 4038746 c.1959C>T synonymous_variant 0.19
clpC1 4038749 c.1956C>T synonymous_variant 0.2
clpC1 4038755 c.1950G>C synonymous_variant 0.27
clpC1 4038767 c.1938G>T synonymous_variant 0.3
clpC1 4038770 c.1935C>G synonymous_variant 0.28
clpC1 4038773 c.1932T>C synonymous_variant 0.3
clpC1 4038782 c.1923G>C synonymous_variant 0.36
clpC1 4038790 c.1915C>T synonymous_variant 0.36
clpC1 4038795 p.Ser637Thr missense_variant 0.4
clpC1 4038812 c.1893T>C synonymous_variant 0.46
clpC1 4038815 c.1890G>T synonymous_variant 0.48
clpC1 4038842 c.1863G>C synonymous_variant 0.49
clpC1 4038860 c.1845G>C synonymous_variant 0.47
clpC1 4038878 c.1827A>G synonymous_variant 0.41
clpC1 4038896 c.1809C>T synonymous_variant 0.32
clpC1 4038905 c.1800A>G synonymous_variant 0.21
clpC1 4038911 c.1794G>T synonymous_variant 0.13
clpC1 4038932 c.1773G>C synonymous_variant 0.12
clpC1 4038968 c.1737G>A synonymous_variant 0.87
clpC1 4038971 c.1734T>C synonymous_variant 0.12
clpC1 4038974 c.1731T>C synonymous_variant 0.13
clpC1 4038980 c.1725C>T synonymous_variant 0.14
clpC1 4038983 c.1722C>T synonymous_variant 0.15
clpC1 4038989 c.1716T>C synonymous_variant 0.17
clpC1 4038997 c.1708T>C synonymous_variant 0.19
clpC1 4039004 c.1701C>G synonymous_variant 0.27
clpC1 4039022 c.1683A>G synonymous_variant 0.34
clpC1 4039046 c.1659C>T synonymous_variant 0.35
clpC1 4039067 c.1638G>C synonymous_variant 0.34
clpC1 4039070 c.1635G>C synonymous_variant 0.33
clpC1 4039082 c.1623C>T synonymous_variant 0.34
clpC1 4039085 c.1620A>G synonymous_variant 0.33
clpC1 4039091 c.1614G>C synonymous_variant 0.33
clpC1 4039097 c.1608G>T synonymous_variant 0.33
clpC1 4039106 c.1599G>C synonymous_variant 0.23
clpC1 4039121 c.1584T>C synonymous_variant 0.19
clpC1 4039124 c.1581C>G synonymous_variant 0.14
clpC1 4039129 p.Lys526Gln missense_variant 0.12
clpC1 4039136 c.1569C>T synonymous_variant 0.19
clpC1 4039142 c.1563A>G synonymous_variant 0.23
clpC1 4039145 c.1560G>C synonymous_variant 0.24
clpC1 4039169 p.Glu512Asp missense_variant 0.29
clpC1 4039178 c.1527G>T synonymous_variant 0.26
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.25
clpC1 4039187 c.1518G>T synonymous_variant 0.25
clpC1 4039190 c.1515C>T synonymous_variant 0.24
clpC1 4039199 p.Ala502Glu missense_variant 0.23
clpC1 4039217 c.1488G>C synonymous_variant 0.19
clpC1 4039220 c.1485G>C synonymous_variant 0.19
clpC1 4039239 p.Gly489Ala missense_variant 0.22
clpC1 4039427 p.Glu426Asp missense_variant 0.21
clpC1 4039430 c.1275T>C synonymous_variant 0.21
clpC1 4039436 c.1269G>A synonymous_variant 0.23
clpC1 4039442 c.1263A>G synonymous_variant 0.29
clpC1 4039448 c.1257A>G synonymous_variant 0.29
clpC1 4039454 c.1251A>C synonymous_variant 0.33
clpC1 4039463 c.1242C>G synonymous_variant 0.25
clpC1 4039466 c.1239T>C synonymous_variant 0.25
clpC1 4039469 c.1236T>C synonymous_variant 0.24
clpC1 4039472 c.1233G>T synonymous_variant 0.24
clpC1 4039481 c.1224T>C synonymous_variant 0.26
clpC1 4039484 c.1221T>C synonymous_variant 0.25
clpC1 4039487 c.1218G>C synonymous_variant 0.26
clpC1 4039517 c.1188C>G synonymous_variant 0.22
clpC1 4039544 c.1161C>T synonymous_variant 0.22
clpC1 4039556 c.1149G>C synonymous_variant 0.18
clpC1 4039565 c.1140G>C synonymous_variant 0.19
clpC1 4039570 p.Met379Leu missense_variant 0.19
clpC1 4039571 c.1134G>C synonymous_variant 0.19
clpC1 4039574 p.Ala377Thr missense_variant 0.18
clpC1 4039586 c.1119G>C synonymous_variant 0.24
clpC1 4039589 c.1116G>C synonymous_variant 0.24
clpC1 4039598 c.1107C>T synonymous_variant 0.29
clpC1 4039610 c.1095G>C synonymous_variant 0.33
clpC1 4039616 c.1089G>C synonymous_variant 0.33
clpC1 4039634 p.Glu357Asn missense_variant 0.33
clpC1 4039649 c.1056G>C synonymous_variant 0.4
clpC1 4039652 c.1053G>C synonymous_variant 0.4
clpC1 4039661 c.1044T>C synonymous_variant 0.42
clpC1 4039688 c.1017G>A synonymous_variant 0.46
clpC1 4039694 c.1011G>T synonymous_variant 0.45
clpC1 4039700 c.1005C>T synonymous_variant 0.45
clpC1 4039724 c.981A>G synonymous_variant 0.47
clpC1 4039733 c.972G>C synonymous_variant 0.47
clpC1 4039742 c.963C>T synonymous_variant 0.44
clpC1 4039748 c.957G>C synonymous_variant 0.48
clpC1 4039751 c.954A>G synonymous_variant 0.47
clpC1 4039757 c.948A>G synonymous_variant 0.51
clpC1 4039766 c.939T>C synonymous_variant 0.57
clpC1 4039769 c.936C>G synonymous_variant 0.58
clpC1 4039778 c.927A>G synonymous_variant 0.57
clpC1 4039793 c.912C>G synonymous_variant 0.53
clpC1 4039817 c.888A>T synonymous_variant 0.38
clpC1 4039820 c.885T>G synonymous_variant 0.37
clpC1 4039831 c.874T>C synonymous_variant 0.34
clpC1 4039832 c.873C>G synonymous_variant 0.33
clpC1 4039835 c.870C>T synonymous_variant 0.33
clpC1 4039850 c.855T>C synonymous_variant 0.3
clpC1 4039865 c.840T>C synonymous_variant 0.15
clpC1 4039868 c.837C>T synonymous_variant 0.16
clpC1 4039880 c.825G>A synonymous_variant 0.19
clpC1 4039898 c.807C>G synonymous_variant 0.17
clpC1 4039904 c.801A>G synonymous_variant 0.21
clpC1 4039913 c.792C>T synonymous_variant 0.23
clpC1 4039937 c.768G>C synonymous_variant 0.35
clpC1 4039940 c.765G>C synonymous_variant 0.35
clpC1 4039943 c.762G>C synonymous_variant 0.35
clpC1 4039946 c.759A>T synonymous_variant 0.36
clpC1 4039952 c.753T>C synonymous_variant 0.37
clpC1 4039955 c.750G>C synonymous_variant 0.37
clpC1 4039958 c.747G>C synonymous_variant 0.38
clpC1 4039979 c.726C>G synonymous_variant 0.35
clpC1 4039985 c.720G>A synonymous_variant 0.37
clpC1 4039991 c.714G>C synonymous_variant 0.36
clpC1 4040002 p.His235Asn missense_variant 0.31
clpC1 4040003 c.702G>C synonymous_variant 0.3
clpC1 4040015 c.690G>C synonymous_variant 0.25
clpC1 4040021 c.684A>C synonymous_variant 0.21
clpC1 4040027 c.678C>G synonymous_variant 0.18
clpC1 4040030 c.675C>G synonymous_variant 0.18
clpC1 4040033 c.672G>C synonymous_variant 0.18
clpC1 4040042 c.663C>T synonymous_variant 0.2
clpC1 4040048 c.657C>T synonymous_variant 0.2
clpC1 4040057 c.648C>T synonymous_variant 0.2
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0