Rv0005 - c.1524G>C
Drug resistance types
44 Sensitive
2 RR-TB
37 HR-TB
8 MDR-TB
5 Pre-XDR-TB
1 XDR-TB
129 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.1.2.1 | 8 |
| lineage4.9 | 76 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9 | 14 |
| lineage4.5 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.2.1 | 13 |
| La3;lineage2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2 | 2 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage3 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.9;lineage6.3 | 7 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La1;lineage4.9 | 2 |
| lineage4.1.3 | 2 |
| La3;lineage4.8 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4 | 5 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| 14 | |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.8 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage2.1 | 5 |
| La3;lineage4.9 | 2 |
| La3;lineage1.1.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La3 | 2 |
| lineage1.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.7 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.1.2 | 1 |
| lineage4.4.1.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| La1;lineage4.1.2 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage4.8.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3.1 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 226 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR1196677 | Other | lineage2.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR13285068 | Sensitive | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR1196546 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR11465025 | Other | lineage4.1.1.3 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4800341 | Other | lineage3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR28119777 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1172234 | Other | lineage4.9 | None | ERR12015083 | Other | La3;lineage4.8 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR3675312 | Sensitive | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3675221 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR2517475 | Other | lineage4 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1173363 | Other | None | SRR3675572 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR752229 | Other | lineage4.5 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1710057 | Other | lineage2.1 | None | ERR3275450 | Other | lineage4 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR3675522 | Other | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6789626 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR1173118 | Other | lineage2.2.1 | None | SRR25827682 | Other | None | ERR4818536 | Other | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR9786671 | Other | None | SRR3675547 | Sensitive | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4816999 | Other | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR2446382 | Other | lineage4 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1165699 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR3675247 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR28119752 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR29016780 | Other | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675311 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR5341456 | Other | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1173633 | Other | lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR9786440 | Other | lineage4.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None |
|---|
