Rv0005 - c.1524G>C


Drug resistance types
34 Sensitive 2 RR-TB 44 HR-TB 8 MDR-TB 5 Pre-XDR-TB 1 XDR-TB 121 Other
lineage Counts
lineage Count
lineage3.1 1
lineage4.9 70
La1;lineage4.9 2
lineage4.3.2 1
lineage4.1.2.1 8
lineage2.1;lineage4.9 14
lineage4.3.1;lineage4.9;lineage6 1
lineage2.2.1 12
La1;lineage4.1.2 1
lineage2.1 5
lineage3 2
lineage2.1;lineage4.9;lineage6.3 8
La3;lineage2.1;lineage4.9;lineage6.3 4
La1.7;lineage4.2 1
lineage4 5
lineage4.3.3 2
lineage4.6.2.2 1
M.canetti;lineage4.9;lineage9 1
lineage1.1.3.1 1
14
lineage4.9;lineage6.3 5
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.1;lineage4 1
lineage4.8 1
lineage4.2.1 1
La1;lineage2;lineage4.9 1
lineage2.2.1;lineage6.3 1
lineage2.2.1.2;lineage7 1
lineage4.4.1.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.1.3 2
lineage4.1 1
La3;lineage4.8 1
lineage4.8.1 1
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage1.1.1;lineage4 1
lineage5.1.4 1
lineage4.7 2
lineage4.5 2
lineage4.2.1.1;lineage4.3.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage6.3.1 1
La3;lineage4.9 1
La3;lineage1.1.2 1
lineage4.1.2 1
lineage2.2 1
lineage2.2.1;lineage3 1
lineage4.9;lineage6.1.3 1
lineage1;lineage4.9 1
lineage4.1.1.1 1
lineage1.1.2 1
La3 2
M.canetti;lineage2.1;lineage4.9 2
La3;lineage2 1
La3;lineage2.2.1 1
lineage4.1;lineage4.9 1
lineage4.3.4.1 1
lineage4.1.1.3;lineage4.9 1
La3;lineage2.1;lineage6.3 1
lineage2.1;lineage6.3 2
lineage4.4.1.1.1 1
lineage4.1.1.3 1
lineage1.2.1.1 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage4.2.2.2 1
spoligotype Counts
spoligotype Count
None 215
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1184346 HR-TB lineage3.1 None
SRR1173400 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR3797070 Other lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
SRR3675387 Other lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR4819781 Other lineage2.2.1 None
SRR3675457 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR9970978 Other La1;lineage4.1.2 None
SRR6044819 Sensitive lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR4797588 MDR-TB lineage3 None
SRR3416776 Other lineage2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786601 Other lineage4.1.2.1 None
SRR23961559 Other La1.7;lineage4.2 None
SRR3675311 Other lineage4.9 None
ERR2446382 Other lineage4 None
SRR12708419 Other lineage4.3.3 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR9786645 Other lineage4.6.2.2 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR1184381 MDR-TB None
ERR9786604 Other None
SRR6789626 Other None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
SRR12708416 Sensitive None
SRR9971114 Other lineage2.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR5341330 Other lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR4820773 HR-TB lineage4.9 None
ERR9786569 Other lineage4.8 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR702406 Other lineage2.1 None
ERR2512770 Sensitive lineage4.2.1 None
SRR3675210 Sensitive lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341345 Sensitive lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR400345 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675580 Sensitive lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
SRR1172951 Other lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR4817731 HR-TB lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR12708372 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786440 Other lineage4.1 None
ERR12015083 Other La3;lineage4.8 None
SRR3675547 Sensitive lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR6044835 Other lineage4.9 None
ERR4815752 Other lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4819422 HR-TB lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR2513283 Sensitive lineage5.1.4 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496523 Other lineage4.7 None
SRR5341456 Other lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675572 Other None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR18213713 HR-TB None
ERR4816999 Other None
SRR28119777 Other lineage4.9 None
ERR752229 Other lineage4.5 None
SRR3675275 Other lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
SRR1710057 Other lineage2.1 None
ERR3275450 Other lineage4 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR3283055 HR-TB lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR9970980 HR-TB lineage4.1.2 None
SRR1196677 Other lineage2.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1173633 Other lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
SRR3675473 Sensitive lineage4.9 None
SRR5153091 HR-TB lineage4.3.3 None
SRR3675312 Sensitive lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR4818536 Other lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1173118 Other lineage2.2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR4811031 Other lineage4.5 None
ERR400336 Sensitive lineage4.9 None
ERR4811030 Other lineage4.9 None
ERR400326 Other lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR3675522 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4819877 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR1172728 RR-TB La3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
ERR9786694 Other lineage4.1.2.1 None
SRR3675514 Sensitive lineage4.9 None
SRR1172234 Other lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR3675247 Other lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR1172817 Other La3 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
SRR6045191 Sensitive lineage4.9 None
ERR2517475 Other lineage4 None
SRR6045892 Sensitive lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
ERR4819241 Other lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR9786682 Other lineage4.1.2.1 None
ERR11465279 Sensitive lineage4.3.4.1 None
ERR9786671 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
SRR1173363 Other None
SRR1184372 MDR-TB None
ERR234659 HR-TB None
SRR25827682 Other None
SRR3675236 Other None
SRR1196583 Other lineage4.9 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3675549 Other lineage4.9 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR11465025 Other lineage4.1.1.3 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
SRR3675455 Sensitive lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR1184312 Other lineage2.2.1 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR3804169 HR-TB lineage4.1.3 None
ERR2513470 Other lineage4.2.2.2 None
SRR6789621 Other lineage4.9 None