TB-Profiler result

Run: ERR3275450
Summary

Run ID: ERR3275450

Sample name:

Date: 18-08-2022 13:10:08

Number of reads: 2535245

Percentage reads mapped: 99.7

Strain: lineage4

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.39 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5650 c.411C>A synonymous_variant 0.2
gyrB 6115 c.876A>G synonymous_variant 0.14
gyrB 6121 c.882C>T synonymous_variant 0.14
gyrB 6127 c.888G>C synonymous_variant 0.14
gyrB 6133 c.894G>C synonymous_variant 0.15
gyrB 6136 c.897G>A synonymous_variant 0.14
gyrB 6151 c.912C>T synonymous_variant 0.14
gyrB 6184 c.945C>T synonymous_variant 0.14
gyrB 6196 c.957C>T synonymous_variant 0.12
gyrA 6610 c.-692C>G upstream_gene_variant 0.16
gyrA 6613 c.-689A>G upstream_gene_variant 0.16
gyrA 6616 c.-686A>G upstream_gene_variant 0.23
gyrA 6634 c.-668T>C upstream_gene_variant 0.26
gyrA 6637 c.-665T>G upstream_gene_variant 0.26
gyrA 6640 c.-662A>C upstream_gene_variant 0.26
gyrA 6643 c.-659A>G upstream_gene_variant 0.26
gyrA 6646 c.-656C>T upstream_gene_variant 0.32
gyrA 6655 c.-647T>C upstream_gene_variant 0.33
gyrA 6673 c.-629A>C upstream_gene_variant 0.4
gyrA 6676 c.-626T>G upstream_gene_variant 0.4
gyrA 6700 c.-602T>C upstream_gene_variant 0.36
gyrA 6703 c.-599G>C upstream_gene_variant 0.37
gyrA 6706 c.-596G>A upstream_gene_variant 0.4
gyrA 6709 c.-593A>G upstream_gene_variant 0.4
gyrA 6712 c.-590G>C upstream_gene_variant 0.4
gyrA 6727 c.-575G>T upstream_gene_variant 0.36
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.33
gyrA 6745 c.-557T>C upstream_gene_variant 0.3
gyrA 6754 c.-548C>T upstream_gene_variant 0.33
gyrA 6763 c.-539G>C upstream_gene_variant 0.39
gyrA 6772 c.-530C>G upstream_gene_variant 0.41
gyrA 6775 c.-527G>C upstream_gene_variant 0.43
gyrA 6793 c.-509T>C upstream_gene_variant 0.48
gyrB 6798 p.Gly520Ala missense_variant 0.42
gyrA 6808 c.-494C>G upstream_gene_variant 0.38
gyrA 6824 c.-478C>T upstream_gene_variant 0.41
gyrA 6841 c.-461T>C upstream_gene_variant 0.38
gyrA 6862 c.-440C>G upstream_gene_variant 0.4
gyrA 6869 c.-433T>C upstream_gene_variant 0.39
gyrA 6872 c.-430_-428delTTGinsCTT upstream_gene_variant 0.39
gyrA 6878 c.-424T>C upstream_gene_variant 0.41
gyrA 6889 c.-413G>A upstream_gene_variant 0.36
gyrA 6898 c.-404G>T upstream_gene_variant 0.18
gyrA 7355 c.54T>A synonymous_variant 0.18
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7391 c.90C>T synonymous_variant 0.17
gyrA 7394 c.93T>C synonymous_variant 0.17
gyrA 7397 c.96G>C synonymous_variant 0.17
gyrA 7403 c.102C>T synonymous_variant 0.2
gyrA 7412 c.111C>G synonymous_variant 0.2
gyrA 7421 c.120G>C synonymous_variant 0.18
gyrA 7424 c.123G>C synonymous_variant 0.17
gyrA 7427 c.126G>C synonymous_variant 0.17
gyrA 7433 c.132G>C synonymous_variant 0.15
gyrA 7439 c.138C>T synonymous_variant 0.17
gyrA 7442 c.141G>C synonymous_variant 0.17
gyrA 7451 c.150C>A synonymous_variant 0.17
gyrA 7457 c.156T>C synonymous_variant 0.17
gyrA 7511 c.210C>T synonymous_variant 0.19
gyrA 7523 c.222C>G synonymous_variant 0.19
gyrA 7526 c.225G>C synonymous_variant 0.19
gyrA 7547 c.246C>T synonymous_variant 0.24
gyrA 7553 c.252C>T synonymous_variant 0.25
gyrA 7559 c.258G>C synonymous_variant 0.29
gyrA 7565 c.264C>T synonymous_variant 0.29
gyrA 7574 c.273G>C synonymous_variant 0.38
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7589 c.288G>C synonymous_variant 0.35
gyrA 7595 c.294C>T synonymous_variant 0.4
gyrA 7607 c.306C>T synonymous_variant 0.4
gyrA 8609 c.1308G>C synonymous_variant 0.12
gyrA 8619 c.1318T>C synonymous_variant 0.12
gyrA 8633 c.1332C>G synonymous_variant 0.12
gyrA 8636 c.1335A>C synonymous_variant 0.12
gyrA 8642 c.1341A>G synonymous_variant 0.12
gyrA 8645 c.1344C>G synonymous_variant 0.12
gyrA 8649 p.Arg450Lys missense_variant 0.14
gyrA 8666 c.1365G>C synonymous_variant 0.14
gyrA 8672 c.1371A>G synonymous_variant 0.14
gyrA 8693 c.1392T>C synonymous_variant 0.13
gyrA 8696 c.1395G>C synonymous_variant 0.13
gyrA 8699 c.1398A>G synonymous_variant 0.13
gyrA 8852 c.1551T>C synonymous_variant 0.15
gyrA 8858 c.1557T>C synonymous_variant 0.17
gyrA 8870 c.1569G>C synonymous_variant 0.2
gyrA 8873 c.1572A>G synonymous_variant 0.19
gyrA 8897 c.1596T>C synonymous_variant 0.21
gyrA 8903 c.1602T>C synonymous_variant 0.24
gyrA 8915 c.1614A>G synonymous_variant 0.28
gyrA 8921 c.1620C>T synonymous_variant 0.32
gyrA 8942 c.1641G>C synonymous_variant 0.32
gyrA 8945 c.1644G>C synonymous_variant 0.31
gyrA 8946 c.1645T>C synonymous_variant 0.31
gyrA 8957 c.1656C>T synonymous_variant 0.32
gyrA 8967 p.Ala556Lys missense_variant 0.3
gyrA 8978 c.1677C>T synonymous_variant 0.28
gyrA 8987 c.1686C>G synonymous_variant 0.25
gyrA 8990 c.1689C>G synonymous_variant 0.26
gyrA 8993 c.1692C>T synonymous_variant 0.26
gyrA 8996 c.1695T>C synonymous_variant 0.25
gyrA 8998 p.Leu566Trp missense_variant 0.25
gyrA 9018 p.Gln573Lys missense_variant 0.24
gyrA 9023 c.1722A>C synonymous_variant 0.18
gyrA 9171 p.Val624Leu missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491097 c.315G>C synonymous_variant 0.15
fgd1 491112 c.330G>C synonymous_variant 0.3
fgd1 491115 c.333G>C synonymous_variant 0.3
fgd1 491121 c.339A>G synonymous_variant 0.3
fgd1 491137 p.Glu119Ile missense_variant 0.36
fgd1 491144 p.Ala121Glu missense_variant 0.38
fgd1 491166 c.384G>T synonymous_variant 0.38
fgd1 491172 c.390C>G synonymous_variant 0.36
fgd1 491184 c.402A>G synonymous_variant 0.42
fgd1 491190 c.408G>C synonymous_variant 0.42
fgd1 491191 p.Gly137Arg missense_variant 0.42
fgd1 491196 c.414A>C synonymous_variant 0.42
fgd1 491202 c.420G>C synonymous_variant 0.45
fgd1 491203 p.Gln141Glu missense_variant 0.45
fgd1 491213 p.Ser144Thr missense_variant 0.4
mshA 575705 c.358T>C synonymous_variant 0.13
mshA 575734 c.387T>G synonymous_variant 0.13
mshA 575737 c.390T>C synonymous_variant 0.14
mshA 575740 c.393G>T synonymous_variant 0.14
mshA 575761 c.414C>G synonymous_variant 0.12
mshA 575785 c.438T>C synonymous_variant 0.12
mshA 575797 p.Ile150Met missense_variant 0.12
rpoB 759623 c.-184C>A upstream_gene_variant 0.17
rpoB 759772 c.-35C>A upstream_gene_variant 0.2
rpoB 760101 c.295T>C synonymous_variant 0.18
rpoB 760110 c.304_306delTCTinsAGC synonymous_variant 0.2
rpoB 760118 c.312T>G synonymous_variant 0.27
rpoB 760121 c.315T>C synonymous_variant 0.23
rpoB 760130 p.Asp108Glu missense_variant 0.25
rpoB 760139 c.333A>G synonymous_variant 0.35
rpoB 760181 c.375T>C synonymous_variant 0.5
rpoB 760184 c.378A>G synonymous_variant 0.5
rpoB 760196 c.390C>G synonymous_variant 0.5
rpoB 760235 c.429T>C synonymous_variant 0.52
rpoB 760244 c.438G>C synonymous_variant 0.48
rpoB 760256 c.450C>T synonymous_variant 0.45
rpoB 760274 p.Glu156Asp missense_variant 0.33
rpoB 760276 p.Lys157Met missense_variant 0.33
rpoB 760283 c.477G>C synonymous_variant 0.31
rpoB 760298 c.492G>C synonymous_variant 0.15
rpoB 760370 c.564C>G synonymous_variant 0.23
rpoB 760376 p.Asp190Glu missense_variant 0.23
rpoB 760382 c.576G>C synonymous_variant 0.27
rpoB 760388 c.582C>T synonymous_variant 0.36
rpoB 760400 c.594G>C synonymous_variant 0.43
rpoB 760406 c.600G>C synonymous_variant 0.44
rpoB 760407 p.Ser201Gly missense_variant 0.44
rpoB 760415 c.609C>T synonymous_variant 0.47
rpoB 760418 c.612G>C synonymous_variant 0.5
rpoB 760430 c.624T>C synonymous_variant 0.47
rpoB 760460 c.654G>C synonymous_variant 0.56
rpoB 760475 c.669A>G synonymous_variant 0.5
rpoB 760481 c.675G>C synonymous_variant 0.5
rpoB 760484 c.678A>G synonymous_variant 0.47
rpoB 760502 c.696C>G synonymous_variant 0.47
rpoB 760588 p.Thr261Ile missense_variant 0.64
rpoB 760591 p.Val262Ala missense_variant 0.7
rpoB 760595 c.789C>T synonymous_variant 0.7
rpoB 760596 p.Thr264Pro missense_variant 0.64
rpoB 760608 c.802C>T synonymous_variant 0.64
rpoB 760611 c.805T>C synonymous_variant 0.62
rpoB 760634 c.828T>C synonymous_variant 0.58
rpoB 760646 c.840C>G synonymous_variant 0.54
rpoB 760655 c.849A>G synonymous_variant 0.5
rpoB 760661 c.855A>G synonymous_variant 0.5
rpoB 760668 p.Thr288Ala missense_variant 0.5
rpoB 760674 c.868T>C synonymous_variant 0.55
rpoB 760679 c.873A>G synonymous_variant 0.55
rpoB 760683 c.877T>C synonymous_variant 0.6
rpoB 760858 p.Val351Ala missense_variant 0.4
rpoB 760862 c.1056G>C synonymous_variant 0.4
rpoB 760886 p.Glu360Asp missense_variant 0.36
rpoB 760887 p.Thr361Val missense_variant 0.36
rpoB 760910 c.1104C>T synonymous_variant 0.33
rpoB 760916 c.1110C>T synonymous_variant 0.33
rpoB 760928 c.1122G>C synonymous_variant 0.18
rpoB 760943 c.1137C>T synonymous_variant 0.19
rpoB 760946 c.1140A>G synonymous_variant 0.19
rpoB 760965 p.Met387Leu missense_variant 0.18
rpoB 760970 c.1164G>C synonymous_variant 0.18
rpoB 760973 c.1167G>T synonymous_variant 0.2
rpoB 760982 c.1176G>C synonymous_variant 0.14
rpoB 760985 c.1179G>C synonymous_variant 0.15
rpoB 760988 c.1182C>G synonymous_variant 0.15
rpoB 760991 c.1185G>T synonymous_variant 0.21
rpoB 760997 c.1191G>C synonymous_variant 0.27
rpoB 761006 c.1200C>G synonymous_variant 0.35
rpoB 761015 c.1209G>C synonymous_variant 0.37
rpoB 761027 c.1221A>C synonymous_variant 0.4
rpoB 761036 c.1230G>C synonymous_variant 0.43
rpoB 761037 c.1231T>C synonymous_variant 0.45
rpoB 761051 c.1245G>T synonymous_variant 0.55
rpoB 761054 c.1248G>C synonymous_variant 0.55
rpoB 761057 c.1251G>C synonymous_variant 0.55
rpoB 761060 c.1254C>G synonymous_variant 0.52
rpoB 761063 c.1257C>G synonymous_variant 0.52
rpoB 761084 c.1278C>A synonymous_variant 0.58
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.52
rpoB 761102 c.1296A>G synonymous_variant 0.52
rpoB 761132 c.1326G>C synonymous_variant 0.44
rpoB 761133 c.1327T>C synonymous_variant 0.44
rpoB 761147 c.1341C>T synonymous_variant 0.38
rpoB 761150 c.1344A>T synonymous_variant 0.33
rpoB 761152 p.Leu449Gln missense_variant 0.13
rpoB 761165 c.1359G>C synonymous_variant 0.25
rpoB 761171 c.1365C>T synonymous_variant 0.23
rpoB 761178 p.Ser458Thr missense_variant 0.18
rpoB 761186 p.Glu460Asp missense_variant 0.18
rpoB 761189 c.1383T>C synonymous_variant 0.18
rpoB 761195 c.1389G>C synonymous_variant 0.25
rpoB 761198 c.1392G>C synonymous_variant 0.24
rpoB 761219 c.1413G>C synonymous_variant 0.25
rpoB 761234 c.1428G>C synonymous_variant 0.25
rpoB 761249 c.1443A>G synonymous_variant 0.22
rpoB 761255 c.1449T>G synonymous_variant 0.22
rpoB 761258 c.1452G>A synonymous_variant 0.22
rpoB 761261 c.1455G>C synonymous_variant 0.22
rpoB 761264 c.1458C>G synonymous_variant 0.22
rpoB 761273 c.1467T>C synonymous_variant 0.24
rpoB 761318 c.1512G>T synonymous_variant 0.44
rpoB 761327 c.1521A>G synonymous_variant 0.43
rpoB 761333 c.1527G>T synonymous_variant 0.36
rpoB 761339 c.1533C>G synonymous_variant 0.42
rpoB 761345 c.1539G>C synonymous_variant 0.36
rpoB 761346 p.Val514Ser missense_variant 0.33
rpoB 761354 c.1548C>A synonymous_variant 0.33
rpoB 761357 c.1551G>T synonymous_variant 0.31
rpoB 761360 c.1554T>C synonymous_variant 0.31
rpoB 761362 p.Ser519Thr missense_variant 0.33
rpoB 761369 p.Glu521Asp missense_variant 0.33
rpoB 761373 p.Val523His missense_variant 0.31
rpoB 761384 c.1578C>G synonymous_variant 0.29
rpoB 761393 c.1587G>A synonymous_variant 0.31
rpoB 761528 c.1722C>T synonymous_variant 0.26
rpoB 761537 c.1731C>G synonymous_variant 0.29
rpoB 761555 c.1749G>C synonymous_variant 0.35
rpoB 761558 c.1752C>G synonymous_variant 0.35
rpoB 761564 c.1758G>C synonymous_variant 0.36
rpoB 761570 c.1764T>C synonymous_variant 0.36
rpoB 761573 c.1767C>G synonymous_variant 0.35
rpoB 761579 c.1773G>C synonymous_variant 0.35
rpoB 761612 c.1806G>T synonymous_variant 0.4
rpoB 761615 c.1809A>C synonymous_variant 0.4
rpoB 761636 c.1830G>T synonymous_variant 0.35
rpoB 761645 c.1839C>G synonymous_variant 0.31
rpoB 761657 c.1851C>T synonymous_variant 0.21
rpoB 761666 c.1860G>C synonymous_variant 0.21
rpoB 761669 c.1863C>T synonymous_variant 0.23
rpoB 761936 c.2130C>T synonymous_variant 0.14
rpoB 761948 c.2142G>C synonymous_variant 0.15
rpoB 761954 c.2148C>A synonymous_variant 0.19
rpoB 761955 p.Ile717Val missense_variant 0.19
rpoB 761969 c.2163G>A synonymous_variant 0.29
rpoB 761990 c.2184G>C synonymous_variant 0.34
rpoB 762008 c.2202C>T synonymous_variant 0.38
rpoB 762014 c.2208C>G synonymous_variant 0.39
rpoB 762038 c.2232C>T synonymous_variant 0.45
rpoB 762047 c.2241G>A synonymous_variant 0.43
rpoB 762053 c.2247T>C synonymous_variant 0.38
rpoB 762056 c.2250G>A synonymous_variant 0.4
rpoB 762065 c.2259T>G synonymous_variant 0.35
rpoB 762083 c.2277T>C synonymous_variant 0.24
rpoB 762086 c.2280G>C synonymous_variant 0.24
rpoB 762101 c.2295C>G synonymous_variant 0.19
rpoB 762114 p.Ile770Val missense_variant 0.24
rpoB 762122 c.2316C>T synonymous_variant 0.27
rpoB 762131 c.2325C>G synonymous_variant 0.17
rpoB 762134 c.2328C>A synonymous_variant 0.17
rpoB 762137 c.2331C>T synonymous_variant 0.17
rpoB 762140 c.2334G>C synonymous_variant 0.17
rpoB 762143 c.2337T>C synonymous_variant 0.17
rpoB 762149 c.2343G>T synonymous_variant 0.17
rpoB 762158 c.2352G>C synonymous_variant 0.15
rpoB 762167 c.2361T>C synonymous_variant 0.17
rpoB 762176 c.2370T>C synonymous_variant 0.17
rpoB 762185 c.2379G>C synonymous_variant 0.17
rpoB 762194 c.2388G>C synonymous_variant 0.15
rpoB 762233 c.2427G>C synonymous_variant 0.28
rpoB 762236 c.2430G>C synonymous_variant 0.22
rpoB 762245 c.2439G>C synonymous_variant 0.22
rpoB 762275 c.2469C>T synonymous_variant 0.22
rpoB 762284 c.2478G>C synonymous_variant 0.24
rpoB 762293 c.2487T>C synonymous_variant 0.27
rpoB 762296 c.2490G>C synonymous_variant 0.27
rpoB 762317 c.2511A>G synonymous_variant 0.22
rpoB 762323 c.2517C>A synonymous_variant 0.21
rpoB 762329 c.2523G>C synonymous_variant 0.18
rpoC 762404 c.-966T>C upstream_gene_variant 0.19
rpoC 762410 c.-960T>G upstream_gene_variant 0.32
rpoC 762416 c.-954A>G upstream_gene_variant 0.32
rpoC 762449 c.-921C>A upstream_gene_variant 0.44
rpoB 762450 p.Arg882Ser missense_variant 0.56
rpoC 762470 c.-900G>C upstream_gene_variant 0.46
rpoC 762488 c.-882G>C upstream_gene_variant 0.5
rpoC 762491 c.-879T>C upstream_gene_variant 0.5
rpoC 762509 c.-861T>G upstream_gene_variant 0.42
rpoB 762510 p.Ala902Pro missense_variant 0.46
rpoC 762515 c.-855C>T upstream_gene_variant 0.4
rpoC 762533 c.-837T>C upstream_gene_variant 0.18
rpoC 762857 c.-513C>G upstream_gene_variant 0.18
rpoC 762860 c.-510G>C upstream_gene_variant 0.18
rpoC 762863 c.-507T>C upstream_gene_variant 0.18
rpoC 762866 c.-504C>T upstream_gene_variant 0.23
rpoB 762879 p.Met1025Leu missense_variant 0.5
rpoC 762894 c.-476C>T upstream_gene_variant 0.56
rpoC 762899 c.-471G>C upstream_gene_variant 0.59
rpoC 762917 c.-453C>G upstream_gene_variant 0.53
rpoC 762920 c.-450C>T upstream_gene_variant 0.52
rpoC 762923 c.-447C>G upstream_gene_variant 0.52
rpoC 762929 c.-441G>C upstream_gene_variant 0.58
rpoC 762959 c.-411G>C upstream_gene_variant 0.64
rpoC 762962 c.-408C>T upstream_gene_variant 0.64
rpoC 762995 c.-375G>T upstream_gene_variant 0.65
rpoC 763031 c.-339T>G upstream_gene_variant 0.7
rpoC 763034 c.-336C>G upstream_gene_variant 0.64
rpoC 763040 c.-330C>G upstream_gene_variant 0.67
rpoC 763070 c.-300T>C upstream_gene_variant 0.54
rpoC 763082 c.-288C>T upstream_gene_variant 0.52
rpoC 763088 c.-282C>G upstream_gene_variant 0.54
rpoC 763094 c.-276G>C upstream_gene_variant 0.61
rpoC 763115 c.-255T>C upstream_gene_variant 0.5
rpoC 763127 c.-243G>C upstream_gene_variant 0.46
rpoC 763136 c.-234C>T upstream_gene_variant 0.48
rpoC 763145 c.-225G>A upstream_gene_variant 0.46
rpoC 763157 c.-213G>T upstream_gene_variant 0.44
rpoC 763166 c.-204A>G upstream_gene_variant 0.5
rpoC 763172 c.-198G>C upstream_gene_variant 0.47
rpoC 763193 c.-177C>G upstream_gene_variant 0.36
rpoC 763486 c.117T>C synonymous_variant 0.21
rpoC 763492 c.123G>C synonymous_variant 0.17
rpoC 763528 c.159G>A synonymous_variant 0.39
rpoC 763531 c.162G>T synonymous_variant 0.42
rpoC 763546 c.177A>G synonymous_variant 0.45
rpoC 763570 c.201G>C synonymous_variant 0.5
rpoC 763594 c.225C>T synonymous_variant 0.45
rpoC 763633 c.264T>C synonymous_variant 0.35
rpoC 763657 c.288G>A synonymous_variant 0.28
rpoC 763660 c.291T>G synonymous_variant 0.29
rpoC 763666 c.297G>C synonymous_variant 0.24
rpoC 763669 c.300C>G synonymous_variant 0.25
rpoC 763675 c.306C>G synonymous_variant 0.28
rpoC 763696 c.327T>C synonymous_variant 0.24
rpoC 763699 c.330G>T synonymous_variant 0.24
rpoC 763702 c.333C>G synonymous_variant 0.27
rpoC 763708 c.339G>C synonymous_variant 0.26
rpoC 763711 c.342G>C synonymous_variant 0.26
rpoC 763714 c.345G>C synonymous_variant 0.25
rpoC 763717 c.348T>C synonymous_variant 0.27
rpoC 763723 c.354G>C synonymous_variant 0.27
rpoC 763732 c.363C>A synonymous_variant 0.3
rpoC 763741 c.372C>T synonymous_variant 0.32
rpoC 763744 c.375G>C synonymous_variant 0.3
rpoC 763747 c.378G>A synonymous_variant 0.3
rpoC 763765 c.396T>C synonymous_variant 0.29
rpoC 763774 c.405G>C synonymous_variant 0.22
rpoC 763781 p.Ser138Ala missense_variant 0.19
rpoC 763782 c.415delG frameshift_variant 0.13
rpoC 763900 c.531G>C synonymous_variant 0.21
rpoC 763933 c.564C>T synonymous_variant 0.26
rpoC 763940 p.Ala191Ser missense_variant 0.28
rpoC 763945 c.576T>C synonymous_variant 0.28
rpoC 763947 p.Ala193Val missense_variant 0.29
rpoC 763951 c.582G>C synonymous_variant 0.29
rpoC 763960 c.591T>G synonymous_variant 0.38
rpoC 763969 c.600C>T synonymous_variant 0.35
rpoC 763987 c.618C>T synonymous_variant 0.31
rpoC 763991 p.Ile208Leu missense_variant 0.28
rpoC 763996 c.627T>C synonymous_variant 0.28
rpoC 763999 c.630C>T synonymous_variant 0.28
rpoC 764002 c.633C>G synonymous_variant 0.29
rpoC 764003 p.Ala212Ser missense_variant 0.31
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.31
rpoC 764029 p.Glu220Asp missense_variant 0.23
rpoC 764032 p.Asp221Glu missense_variant 0.21
rpoC 764040 p.Ser224Thr missense_variant 0.23
rpoC 764044 c.675T>C synonymous_variant 0.23
rpoC 764054 c.685C>T synonymous_variant 0.15
rpoC 764059 c.690G>T synonymous_variant 0.15
rpoC 764332 c.963G>A synonymous_variant 0.2
rpoC 764338 c.969G>A synonymous_variant 0.24
rpoC 764353 c.984G>T synonymous_variant 0.24
rpoC 764365 c.996C>T synonymous_variant 0.24
rpoC 764371 c.1002G>C synonymous_variant 0.24
rpoC 764377 c.1008C>G synonymous_variant 0.24
rpoC 764380 c.1011G>C synonymous_variant 0.25
rpoC 764387 c.1018T>C synonymous_variant 0.27
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.28
rpoC 764428 c.1059G>C synonymous_variant 0.33
rpoC 764431 c.1062G>C synonymous_variant 0.33
rpoC 764434 c.1065A>G synonymous_variant 0.33
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.32
rpoC 764458 c.1089G>C synonymous_variant 0.27
rpoC 764461 c.1092A>G synonymous_variant 0.27
rpoC 764497 c.1128A>G synonymous_variant 0.42
rpoC 764510 c.1141C>T synonymous_variant 0.38
rpoC 764524 c.1155C>G synonymous_variant 0.42
rpoC 764530 c.1161C>G synonymous_variant 0.44
rpoC 764534 c.1165C>A synonymous_variant 0.44
rpoC 764539 c.1170C>T synonymous_variant 0.42
rpoC 764542 c.1173C>T synonymous_variant 0.48
rpoC 764545 c.1176C>A synonymous_variant 0.44
rpoC 764560 c.1191T>C synonymous_variant 0.46
rpoC 764575 c.1206T>G synonymous_variant 0.48
rpoC 764611 c.1242G>T synonymous_variant 0.42
rpoC 764626 c.1257C>T synonymous_variant 0.35
rpoC 764632 c.1263T>C synonymous_variant 0.33
rpoC 764650 c.1281G>T synonymous_variant 0.3
rpoC 764668 c.1299C>T synonymous_variant 0.38
rpoC 764692 c.1323C>T synonymous_variant 0.36
rpoC 764713 c.1344G>T synonymous_variant 0.29
rpoC 764716 c.1347G>C synonymous_variant 0.3
rpoC 764746 c.1377G>T synonymous_variant 0.25
rpoC 764752 c.1383G>C synonymous_variant 0.26
rpoC 764758 c.1389C>G synonymous_variant 0.3
rpoC 764764 c.1395T>C synonymous_variant 0.28
rpoC 764791 c.1422C>G synonymous_variant 0.19
rpoC 764803 c.1434C>T synonymous_variant 0.19
rpoC 764809 c.1440C>T synonymous_variant 0.18
rpoC 764810 p.Pro481Ala missense_variant 0.19
rpoC 764815 c.1446A>G synonymous_variant 0.18
rpoC 764824 c.1455T>C synonymous_variant 0.18
rpoC 764827 c.1458G>C synonymous_variant 0.22
rpoC 764858 c.1489T>C synonymous_variant 0.23
rpoC 764869 c.1500C>T synonymous_variant 0.25
rpoC 764875 c.1506C>A synonymous_variant 0.24
rpoC 764887 c.1518G>C synonymous_variant 0.17
rpoC 764888 c.1519T>C synonymous_variant 0.17
rpoC 764911 c.1542A>G synonymous_variant 0.19
rpoC 764912 p.Met515Gln missense_variant 0.19
rpoC 764932 c.1563C>A synonymous_variant 0.15
rpoC 764948 c.1579_1581delTTGinsCTC synonymous_variant 0.26
rpoC 764968 c.1599T>C synonymous_variant 0.22
rpoC 765004 c.1635G>C synonymous_variant 0.21
rpoC 765007 c.1638T>G synonymous_variant 0.21
rpoC 765008 c.1639T>C synonymous_variant 0.21
rpoC 765011 c.1642_1644delAGCinsTCG synonymous_variant 0.2
rpoC 765016 c.1647C>G synonymous_variant 0.22
rpoC 765019 c.1650A>G synonymous_variant 0.29
rpoC 765040 c.1671T>C synonymous_variant 0.32
rpoC 765041 c.1672T>C synonymous_variant 0.29
rpoC 765047 c.1678T>C synonymous_variant 0.28
rpoC 765055 c.1686C>G synonymous_variant 0.26
rpoC 765073 c.1704G>C synonymous_variant 0.18
rpoC 765076 c.1707A>G synonymous_variant 0.14
rpoC 765079 c.1710T>G synonymous_variant 0.14
rpoC 765082 c.1713G>C synonymous_variant 0.14
rpoC 765085 c.1716T>C synonymous_variant 0.15
rpoC 765089 c.1720T>C synonymous_variant 0.14
rpoC 765100 c.1731G>C synonymous_variant 0.14
rpoC 765103 c.1734G>T synonymous_variant 0.15
rpoC 765370 c.2001G>C synonymous_variant 0.2
rpoC 765379 c.2010G>C synonymous_variant 0.2
rpoC 765382 c.2013G>T synonymous_variant 0.2
rpoC 765383 p.Met672Leu missense_variant 0.24
rpoC 765403 c.2034G>C synonymous_variant 0.3
rpoC 765405 p.Leu679His missense_variant 0.29
rpoC 765409 c.2040T>G synonymous_variant 0.3
rpoC 765421 c.2052C>G synonymous_variant 0.42
rpoC 765449 p.Ala694Ser missense_variant 0.35
rpoC 765454 c.2085C>G synonymous_variant 0.38
rpoC 765469 c.2100G>C synonymous_variant 0.35
rpoC 765478 c.2109T>G synonymous_variant 0.32
rpoC 765480 p.Tyr704Phe missense_variant 0.32
rpoC 765499 c.2130C>G synonymous_variant 0.26
rpoC 765517 c.2148C>G synonymous_variant 0.21
rpoC 765533 p.Tyr722His missense_variant 0.13
rpoC 765835 c.2466C>T synonymous_variant 0.12
rpoC 765861 p.Phe831Tyr missense_variant 0.2
rpoC 765875 p.Val836Ile missense_variant 0.25
rpoC 765907 c.2538G>T synonymous_variant 0.24
rpoC 765910 c.2541G>C synonymous_variant 0.25
rpoC 765928 c.2559C>G synonymous_variant 0.26
rpoC 765940 c.2571A>T synonymous_variant 0.31
rpoC 765947 c.2578T>C synonymous_variant 0.21
rpoC 765962 c.2593_2595delTTGinsCTT synonymous_variant 0.14
rpoC 765967 c.2598C>T synonymous_variant 0.15
rpoC 765973 c.2604C>G synonymous_variant 0.12
rpoC 765979 c.2610C>G synonymous_variant 0.12
rpoC 765982 c.2613C>T synonymous_variant 0.12
rpoC 766333 c.2964G>T synonymous_variant 0.18
rpoC 766345 c.2976T>C synonymous_variant 0.16
rpoC 766348 c.2979A>G synonymous_variant 0.15
rpoC 766351 c.2982C>G synonymous_variant 0.15
rpoC 766353 p.Val995Ala missense_variant 0.15
rpoC 766369 c.3000C>G synonymous_variant 0.16
rpoC 766375 c.3006C>G synonymous_variant 0.16
rpoC 766381 c.3012C>T synonymous_variant 0.17
rpoC 766384 c.3015A>G synonymous_variant 0.16
rpoC 766390 c.3021C>T synonymous_variant 0.17
rpoC 766393 c.3024C>T synonymous_variant 0.17
rpoC 766408 c.3039C>T synonymous_variant 0.16
rpoC 766435 p.Glu1022Asp missense_variant 0.14
rpoC 766507 c.3138C>T synonymous_variant 0.15
rpoC 766513 c.3144C>T synonymous_variant 0.16
rpoC 766522 c.3153C>A synonymous_variant 0.15
rpoC 766528 c.3159T>G synonymous_variant 0.15
rpoC 766531 c.3162G>C synonymous_variant 0.17
rpoC 766534 c.3165C>G synonymous_variant 0.16
rpoC 766537 c.3168G>A synonymous_variant 0.15
rpoC 766540 p.Asp1057Glu missense_variant 0.15
rpoC 766549 c.3180G>C synonymous_variant 0.15
rpoC 766570 c.3201T>C synonymous_variant 0.15
rpoC 766573 c.3204T>G synonymous_variant 0.15
rpoC 766594 c.3225G>T synonymous_variant 0.15
rpoC 766607 p.Ile1080Leu missense_variant 0.17
rpoC 766618 c.3249G>T synonymous_variant 0.18
rpoC 766942 c.3573C>T synonymous_variant 0.14
rpoC 766945 c.3576A>C synonymous_variant 0.21
rpoC 766963 c.3594T>C synonymous_variant 0.31
rpoC 766996 c.3627C>T synonymous_variant 0.41
rpoC 767002 c.3633G>C synonymous_variant 0.38
rpoC 767008 c.3639G>A synonymous_variant 0.39
rpoC 767023 c.3654C>T synonymous_variant 0.36
rpoC 767044 c.3675G>C synonymous_variant 0.32
rpoC 767080 c.3711G>C synonymous_variant 0.26
rpoC 767098 c.3729T>C synonymous_variant 0.23
rpoC 767104 c.3735C>G synonymous_variant 0.29
rpoC 767107 c.3738C>T synonymous_variant 0.31
rpoC 767119 c.3750A>G synonymous_variant 0.3
rpoC 767125 c.3756G>C synonymous_variant 0.32
rpoC 767134 c.3765C>T synonymous_variant 0.32
rpoC 767138 c.3769C>T synonymous_variant 0.3
rpoC 767149 c.3780C>T synonymous_variant 0.31
rpoC 767158 c.3789T>C synonymous_variant 0.3
rpoC 767179 c.3810C>T synonymous_variant 0.23
rpoC 767180 p.Ala1271Ser missense_variant 0.23
rpoC 767191 c.3822C>G synonymous_variant 0.29
rpoC 767197 c.3828G>A synonymous_variant 0.29
rpoC 767203 c.3834C>G synonymous_variant 0.27
rpoC 767206 c.3837C>G synonymous_variant 0.27
rpoC 767209 c.3840T>C synonymous_variant 0.27
rpoC 767212 c.3843G>C synonymous_variant 0.26
rpoC 767221 c.3852C>G synonymous_variant 0.25
rpoC 767230 c.3861G>C synonymous_variant 0.19
rpoC 767233 c.3864T>C synonymous_variant 0.17
rpoC 767254 c.3885G>C synonymous_variant 0.13
mmpR5 778898 c.-92C>A upstream_gene_variant 0.12
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781559 c.-1G>C upstream_gene_variant 0.3
rpsL 781572 p.Gln5Asn missense_variant 0.43
rpsL 781586 c.27C>T synonymous_variant 0.5
rpsL 781595 c.36T>C synonymous_variant 0.57
rpsL 781608 p.Ser17Ala missense_variant 0.57
rpsL 781616 c.57C>G synonymous_variant 0.73
rpsL 781628 c.69T>C synonymous_variant 0.73
rpsL 781649 c.90T>C synonymous_variant 0.6
rpsL 781655 c.96T>C synonymous_variant 0.6
rpsL 781658 c.99A>C synonymous_variant 0.53
rpsL 781670 c.111G>C synonymous_variant 0.43
rpsL 781706 c.147T>C synonymous_variant 0.14
rpsL 781763 c.204C>G synonymous_variant 0.17
rpsL 781766 c.207C>T synonymous_variant 0.17
rpsL 781772 c.213C>T synonymous_variant 0.17
rpsL 781802 c.243G>C synonymous_variant 0.46
rpsL 781814 c.255C>T synonymous_variant 0.57
rpsL 781817 c.258G>T synonymous_variant 0.57
rpsL 781829 c.270G>C synonymous_variant 0.53
rpsL 781832 c.273T>C synonymous_variant 0.57
rpsL 781859 c.300T>C synonymous_variant 0.57
rpsL 781868 c.309T>C synonymous_variant 0.47
rpsL 781871 c.312G>C synonymous_variant 0.47
rpsL 781877 c.318T>A synonymous_variant 0.5
rpsL 781892 c.333A>G synonymous_variant 0.4
rpsL 781898 c.339A>T synonymous_variant 0.4
rpsL 781907 c.348T>C synonymous_variant 0.4
rpsL 781916 c.357T>C synonymous_variant 0.27
rpsL 781929 p.Gly124Ser missense_variant 0.17
rpsL 781933 c.374G>A splice_region_variant&stop_retained_variant 0.17
atpE 1461113 c.69C>T synonymous_variant 0.2
atpE 1461132 p.Val30Ile missense_variant 0.42
atpE 1461146 c.102G>T synonymous_variant 0.46
atpE 1461149 c.105T>G synonymous_variant 0.46
atpE 1461161 c.117C>G synonymous_variant 0.46
atpE 1461164 c.120C>T synonymous_variant 0.43
atpE 1461167 c.123G>T synonymous_variant 0.43
atpE 1461170 c.126A>G synonymous_variant 0.4
atpE 1461179 c.135G>T synonymous_variant 0.4
atpE 1461182 c.138A>G synonymous_variant 0.38
atpE 1461185 c.141G>C synonymous_variant 0.38
atpE 1461197 c.153A>C synonymous_variant 0.38
atpE 1461219 c.175T>C synonymous_variant 0.46
atpE 1461230 c.186G>T synonymous_variant 0.36
atpE 1461233 c.189A>G synonymous_variant 0.36
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.38
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.38
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.42
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.42
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.42
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.42
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.2
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 0.19
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 0.19
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.19
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.2
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.19
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.19
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.19
rrs 1472043 n.198T>A non_coding_transcript_exon_variant 0.19
rrs 1472050 n.205G>C non_coding_transcript_exon_variant 0.22
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.25
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.28
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.47
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.45
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.44
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.2
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.68
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.29
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.29
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.32
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.33
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.35
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.34
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.34
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.34
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.41
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.33
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.35
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.36
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.43
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.29
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 0.16
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 0.17
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.37
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.69
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.75
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.75
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.15
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.15
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.49
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.54
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.55
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.55
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.57
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.59
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.59
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.59
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.61
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.59
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.56
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.57
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.34
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.52
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.52
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.19
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.14
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.29
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.3
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.39
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.4
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.38
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.38
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.4
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.36
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.31
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.27
rrs 1472846 n.1001C>T non_coding_transcript_exon_variant 0.48
rrs 1472847 n.1002G>A non_coding_transcript_exon_variant 0.48
rrs 1472848 n.1003T>C non_coding_transcript_exon_variant 0.5
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 0.56
rrs 1472861 n.1016G>A non_coding_transcript_exon_variant 0.59
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.48
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.48
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.52
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.52
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.57
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.57
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.64
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.64
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.79
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.71
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.6
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.53
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.53
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.5
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.47
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.55
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.55
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.55
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.57
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.59
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 0.33
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.33
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.33
rrl 1473684 n.27G>A non_coding_transcript_exon_variant 0.3
rrl 1473699 n.43delG non_coding_transcript_exon_variant 0.27
rrl 1473707 n.50T>A non_coding_transcript_exon_variant 0.29
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.31
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.33
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.43
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.43
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.43
rrl 1473770 n.113T>C non_coding_transcript_exon_variant 0.47
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.33
rrl 1473812 n.155G>A non_coding_transcript_exon_variant 0.36
rrl 1473814 n.157A>T non_coding_transcript_exon_variant 0.36
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.42
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.53
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.53
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.53
rrl 1473839 n.182G>A non_coding_transcript_exon_variant 0.53
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.53
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.53
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.53
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.57
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.57
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.67
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.67
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.67
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.67
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.31
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.35
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.37
rrl 1474181 n.524_525insT non_coding_transcript_exon_variant 0.33
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 0.33
rrl 1474185 n.529delA non_coding_transcript_exon_variant 0.33
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.24
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.13
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.4
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.46
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.48
rrl 1474507 n.850G>C non_coding_transcript_exon_variant 0.43
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.5
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.64
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.67
rrl 1474743 n.1086T>G non_coding_transcript_exon_variant 0.53
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.6
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.5
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.45
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.41
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.42
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.4
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.42
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.5
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.53
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.54
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.54
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.27
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.27
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.27
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.2
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.24
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.33
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.44
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.44
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.47
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.56
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.48
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.47
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.28
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.17
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.21
rrl 1475760 n.2105_2106delGC non_coding_transcript_exon_variant 0.43
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.43
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.43
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.15
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.14
rrl 1475954 n.2297A>C non_coding_transcript_exon_variant 0.38
rrl 1475959 n.2302C>A non_coding_transcript_exon_variant 0.12
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.25
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.27
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.21
rrl 1475989 n.2332T>C non_coding_transcript_exon_variant 0.21
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.21
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.21
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.14
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.4
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.47
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.47
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.41
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.42
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.19
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.25
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.73
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.48
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.46
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.48
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.48
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.48
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.21
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.46
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.46
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.46
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.46
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.62
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.17
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.42
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.42
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.45
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.46
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.45
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.62
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.73
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.76
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.76
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.76
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.77
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.77
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.84
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.83
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.84
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.83
rrl 1476454 n.2797C>T non_coding_transcript_exon_variant 0.13
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.81
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.79
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.64
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.5
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.46
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.46
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.46
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.46
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.44
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.46
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.46
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.46
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.46
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.46
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.44
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.39
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.39
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.55
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.33
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.36
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.33
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.27
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.2
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.2
fabG1 1673346 c.-94C>G upstream_gene_variant 0.12
fabG1 1673349 c.-91G>C upstream_gene_variant 0.12
inhA 1674876 c.675C>T synonymous_variant 0.25
inhA 1674879 c.678T>C synonymous_variant 0.31
inhA 1674892 p.Asn231Asp missense_variant 0.33
inhA 1674903 c.702T>C synonymous_variant 0.33
inhA 1674904 p.Ala235Pro missense_variant 0.33
inhA 1674909 c.708G>A synonymous_variant 0.33
inhA 1674912 c.711G>C synonymous_variant 0.36
inhA 1674915 c.714C>G synonymous_variant 0.36
inhA 1674942 c.741T>C synonymous_variant 0.4
inhA 1674949 c.748C>T synonymous_variant 0.4
inhA 1674966 c.765T>C synonymous_variant 0.4
rpsA 1833517 c.-24delC upstream_gene_variant 0.12
rpsA 1833536 c.-6A>C upstream_gene_variant 0.17
rpsA 1833547 c.6G>A synonymous_variant 0.18
rpsA 1833589 c.48A>C synonymous_variant 0.23
rpsA 1833595 c.54T>G synonymous_variant 0.24
rpsA 1833596 p.Ser19Ala missense_variant 0.24
rpsA 1833604 c.63C>T synonymous_variant 0.3
rpsA 1833616 c.75A>T synonymous_variant 0.33
rpsA 1833619 c.78A>C synonymous_variant 0.29
rpsA 1833625 c.84A>G synonymous_variant 0.39
rpsA 1833664 c.123C>G synonymous_variant 0.35
rpsA 1833676 c.135A>G synonymous_variant 0.3
rpsA 1833679 c.138G>T synonymous_variant 0.28
rpsA 1833685 c.144G>C synonymous_variant 0.29
rpsA 1833691 c.150G>A synonymous_variant 0.25
rpsA 1833694 c.153G>T synonymous_variant 0.25
rpsA 1833697 c.156C>T synonymous_variant 0.25
rpsA 1833700 c.159C>T synonymous_variant 0.26
rpsA 1833709 c.168C>T synonymous_variant 0.24
rpsA 1833724 c.183C>T synonymous_variant 0.21
rpsA 1833727 c.186G>C synonymous_variant 0.22
rpsA 1833733 c.192C>G synonymous_variant 0.2
rpsA 1833734 p.Ala65Ser missense_variant 0.2
rpsA 1833742 c.201A>G synonymous_variant 0.15
rpsA 1833745 c.204G>C synonymous_variant 0.16
rpsA 1833748 c.207C>G synonymous_variant 0.15
rpsA 1833760 c.219C>T synonymous_variant 0.22
rpsA 1833787 c.246C>G synonymous_variant 0.25
rpsA 1833790 c.249T>C synonymous_variant 0.25
rpsA 1833802 c.261A>G synonymous_variant 0.25
rpsA 1833811 c.270G>T synonymous_variant 0.24
rpsA 1833823 c.282G>A synonymous_variant 0.4
rpsA 1833832 c.291G>A synonymous_variant 0.44
rpsA 1833838 c.297G>C synonymous_variant 0.44
rpsA 1833841 c.300C>G synonymous_variant 0.42
rpsA 1833847 c.306C>G synonymous_variant 0.4
rpsA 1833856 c.315A>G synonymous_variant 0.47
rpsA 1833862 c.321G>T synonymous_variant 0.52
rpsA 1833874 c.333T>G synonymous_variant 0.5
rpsA 1833886 c.345C>G synonymous_variant 0.48
rpsA 1833894 p.Ala118Glu missense_variant 0.45
rpsA 1833928 c.387G>C synonymous_variant 0.56
rpsA 1833949 c.408T>C synonymous_variant 0.5
rpsA 1833961 c.420C>G synonymous_variant 0.52
rpsA 1833970 c.429G>T synonymous_variant 0.5
rpsA 1833979 c.438T>C synonymous_variant 0.52
rpsA 1833991 c.450C>G synonymous_variant 0.5
rpsA 1834000 c.459G>C synonymous_variant 0.46
rpsA 1834009 c.468C>T synonymous_variant 0.43
rpsA 1834012 c.471G>C synonymous_variant 0.45
rpsA 1834015 c.474G>C synonymous_variant 0.45
rpsA 1834021 c.480C>T synonymous_variant 0.43
rpsA 1834030 c.489C>G synonymous_variant 0.38
rpsA 1834033 c.492C>T synonymous_variant 0.36
rpsA 1834073 p.Lys178Arg missense_variant 0.17
rpsA 1834099 c.558C>G synonymous_variant 0.1
rpsA 1834228 c.687C>A synonymous_variant 0.25
rpsA 1834231 c.690T>G synonymous_variant 0.24
rpsA 1834234 c.693G>T synonymous_variant 0.24
rpsA 1834240 c.699T>C synonymous_variant 0.24
rpsA 1834246 c.705G>T synonymous_variant 0.25
rpsA 1834249 c.708T>C synonymous_variant 0.23
rpsA 1834252 c.711C>G synonymous_variant 0.25
rpsA 1834261 c.720A>G synonymous_variant 0.24
rpsA 1834264 c.723G>C synonymous_variant 0.23
rpsA 1834279 c.738C>T synonymous_variant 0.3
rpsA 1834294 c.753G>T synonymous_variant 0.24
rpsA 1834297 c.756C>T synonymous_variant 0.28
rpsA 1834303 c.762T>G synonymous_variant 0.22
rpsA 1834306 c.765T>C synonymous_variant 0.22
rpsA 1834327 c.786G>T synonymous_variant 0.37
rpsA 1834357 c.816T>C synonymous_variant 0.42
rpsA 1834366 c.825A>G synonymous_variant 0.44
rpsA 1834375 c.834G>C synonymous_variant 0.48
rpsA 1834396 c.855G>C synonymous_variant 0.45
rpsA 1834411 c.870T>G synonymous_variant 0.47
rpsA 1834414 c.873C>T synonymous_variant 0.47
rpsA 1834417 c.876G>C synonymous_variant 0.47
rpsA 1834423 c.882G>C synonymous_variant 0.52
rpsA 1834429 c.888C>T synonymous_variant 0.55
rpsA 1834438 c.897C>T synonymous_variant 0.53
rpsA 1834451 c.910T>C synonymous_variant 0.53
rpsA 1834456 c.915T>G synonymous_variant 0.52
rpsA 1834468 c.927A>G synonymous_variant 0.42
rpsA 1834477 c.936C>T synonymous_variant 0.44
rpsA 1834489 c.948T>C synonymous_variant 0.41
rpsA 1834519 c.978G>C synonymous_variant 0.5
rpsA 1834520 p.Ala327Ser missense_variant 0.45
rpsA 1834528 c.987T>C synonymous_variant 0.45
rpsA 1834534 c.993C>T synonymous_variant 0.5
rpsA 1834543 c.1002C>G synonymous_variant 0.5
rpsA 1834555 c.1014T>G synonymous_variant 0.4
rpsA 1834557 p.Ala339Gly missense_variant 0.4
rpsA 1834606 c.1065C>T synonymous_variant 0.5
rpsA 1834609 c.1068T>C synonymous_variant 0.47
rpsA 1834619 c.1078T>C synonymous_variant 0.5
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.5
rpsA 1834633 c.1092A>G synonymous_variant 0.56
rpsA 1834639 c.1098T>C synonymous_variant 0.53
rpsA 1834645 c.1104C>T synonymous_variant 0.58
rpsA 1834666 c.1125G>C synonymous_variant 0.57
rpsA 1834667 p.Ala376Ser missense_variant 0.57
rpsA 1834690 c.1149T>C synonymous_variant 0.5
rpsA 1834698 c.1157_1158insC frameshift_variant 0.48
rpsA 1834701 p.Gln387Pro missense_variant 0.48
rpsA 1834704 c.1164delC frameshift_variant 0.48
rpsA 1834720 c.1179C>G synonymous_variant 0.42
rpsA 1834732 c.1191T>C synonymous_variant 0.42
rpsA 1834738 c.1197A>G synonymous_variant 0.44
rpsA 1834753 c.1212T>C synonymous_variant 0.42
rpsA 1834759 c.1218A>C synonymous_variant 0.35
rpsA 1834765 p.Glu408Asp missense_variant 0.35
rpsA 1834774 c.1233C>T synonymous_variant 0.15
rpsA 1834776 p.Ala412Glu missense_variant 0.15
rpsA 1834780 c.1239A>G synonymous_variant 0.13
rpsA 1834789 c.1248T>C synonymous_variant 0.23
rpsA 1834813 c.1272G>T synonymous_variant 0.17
rpsA 1834830 p.Ala430Val missense_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154915 c.1197A>G synonymous_variant 1.0
pncA 2289919 c.-678C>T upstream_gene_variant 0.17
kasA 2517917 c.-198G>C upstream_gene_variant 0.33
kasA 2517941 c.-174C>G upstream_gene_variant 0.29
kasA 2517953 c.-162C>T upstream_gene_variant 0.21
kasA 2517962 c.-153C>G upstream_gene_variant 0.16
kasA 2518726 c.612G>C synonymous_variant 0.2
kasA 2518738 c.624G>C synonymous_variant 0.27
kasA 2518756 c.642G>C synonymous_variant 0.36
kasA 2518768 c.654C>G synonymous_variant 0.36
kasA 2518771 c.657C>G synonymous_variant 0.33
kasA 2518774 c.660C>T synonymous_variant 0.31
kasA 2518783 c.669T>G synonymous_variant 0.31
kasA 2518787 p.Arg225Lys missense_variant 0.31
kasA 2518792 c.678C>T synonymous_variant 0.25
kasA 2518795 c.681C>T synonymous_variant 0.25
kasA 2518798 c.684G>C synonymous_variant 0.25
kasA 2518822 c.708C>A synonymous_variant 0.2
kasA 2518825 c.711T>C synonymous_variant 0.21
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087095 p.Phe92Leu missense_variant 0.14
embC 4240381 p.Gln173His missense_variant 0.18
embC 4240729 c.867C>G synonymous_variant 0.2
embC 4240735 c.873C>G synonymous_variant 0.25
embC 4240741 c.879C>T synonymous_variant 0.26
embC 4240756 c.894G>C synonymous_variant 0.32
embC 4240771 c.909G>C synonymous_variant 0.3
embC 4240772 p.Ser304Ala missense_variant 0.3
embC 4240778 p.His306Gly missense_variant 0.32
embC 4240781 p.Ala307Ser missense_variant 0.33
embC 4240789 c.927T>C synonymous_variant 0.44
embC 4240819 c.957A>C synonymous_variant 0.5
embC 4240826 p.Ala322Ser missense_variant 0.52
embC 4240831 c.969T>G synonymous_variant 0.48
embC 4240856 p.Ala332Thr missense_variant 0.42
embC 4240859 p.Leu333Ile missense_variant 0.42
embC 4240876 c.1014C>T synonymous_variant 0.27
embC 4240879 c.1017G>T synonymous_variant 0.27
embC 4240885 c.1023T>C synonymous_variant 0.27
embC 4240886 p.Ile342Val missense_variant 0.27
embC 4240897 c.1035C>G synonymous_variant 0.25
embC 4240900 c.1038A>G synonymous_variant 0.25
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4245974 c.-540C>A upstream_gene_variant 0.15
embA 4246367 p.Tyr1045* stop_gained 0.14
embB 4247455 c.942C>G synonymous_variant 0.2
embB 4248779 p.Glu756* stop_gained 0.2
ethA 4326360 p.Met372Leu missense_variant 0.18
gid 4408012 p.Arg64Leu missense_variant 0.18
gid 4408358 c.-156C>G upstream_gene_variant 1.0