Rv0001 - c.771A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
48 Sensitive
2 RR-TB
36 HR-TB
9 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
52 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 67 |
| lineage4.6.2.2 | 2 |
| La1;lineage4.9 | 1 |
| lineage2.2.1 | 9 |
| La1.7;lineage4.2 | 1 |
| La1.2 | 1 |
| lineage1.1.1;lineage4 | 1 |
| La1.7;lineage4.9 | 2 |
| 5 | |
| La3;lineage4.9 | 5 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.8 | 3 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.1.2.1 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage9 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| M.canetti;lineage1 | 1 |
| lineage4 | 5 |
| lineage4.2.1 | 1 |
| lineage1.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage3.1.2.2 | 1 |
| lineage3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 149 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819877 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR4769452 | Other | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR23961549 | Other | La1.2 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR212001 | HR-TB | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR2027305 | Sensitive | lineage4.8 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283042 | Other | lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR11342669 | Other | lineage4.8 | None | SRR3675522 | Other | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6046593 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | SRR29096178 | Sensitive | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR2446382 | Other | lineage4 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR11342670 | Sensitive | lineage4.8 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR4812155 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176740 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR12708416 | Sensitive | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR987722 | MDR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4819241 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4800717 | HR-TB | lineage1.2.2.2 | None | SRR1169249 | Other | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4769450 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR400326 | Other | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR2514552 | Sensitive | lineage3 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR6044942 | HR-TB | lineage4.9 | None |
|---|
