Rv0005 - c.1554T>C


Drug resistance types
70 Sensitive 52 RR-TB 141 HR-TB 131 MDR-TB 9 Pre-XDR-TB 3 XDR-TB 227 Other
lineage Counts
lineage Count
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
La1.7;lineage3.1;lineage4 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.2.2.2 1
lineage4.9 205
lineage4.6.2.2 5
M.canetti;lineage4.9 7
La1.7;lineage4.9 11
lineage3 5
lineage3.1.2.2 1
La1.7.1;La1.7.X-unk4 1
La3;lineage2.1;lineage4.9;lineage6.3 4
M.canetti;lineage1 1
lineage2.1;lineage4.1.4;lineage4.9 1
La3;lineage4.9 13
lineage4.6.3;lineage4.9 2
lineage4.3.2.1 2
M.canetti;lineage2.1;lineage4.9 26
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage1.2.2.2 1
lineage2.2.1 22
lineage5.2 2
La1;lineage4.9 2
lineage4.1.2.1 16
lineage2.2.2 3
lineage4.9;lineage6.3 8
La2;lineage4.9;lineage9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage4.3.3 5
lineage2.1;lineage4.9 21
lineage4.5 3
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage1.1.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
La1.7.1;La1.7.X-unk4;lineage7 1
La3;lineage4.8 2
La3;lineage2 1
lineage2.1 3
lineage4.2;lineage4.8.1;lineage4.9 2
La3 2
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage1.2.1.2.1 1
La1.7;lineage4.2 1
lineage4 8
lineage2.1;lineage4.9;lineage6.3 10
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9 12
lineage1.1 1
lineage2.2.1.1 2
lineage4.8;lineage4.9 2
lineage1.1.1;lineage4 1
La1.7.1 2
La3;M.canetti;lineage3.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage3 1
lineage4.2;lineage4.9 3
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;lineage4 1
M.canetti;lineage4.9;lineage9 1
21
lineage2.1;lineage6.3 2
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9;lineage7 1
lineage4.3.4 1
lineage2.1;lineage2.2;lineage6.3 1
lineage4.9;lineage7 5
lineage4.4.1.1.1 2
La3;lineage2.1;lineage4.9 3
lineage6.3.1 1
lineage4.3.4.2.1 6
lineage3.1 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
La1.7;M.canetti;lineage4.9 5
lineage4.3.2;lineage4.9 1
lineage4.3.2 1
M.canetti;lineage2.1;lineage4.1.2.1 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage2;lineage4.9 1
La1.7.1;lineage4.9 1
La1.7;lineage4.9;lineage7 3
La2;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 2
lineage4.1.2.1.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.3.1;lineage4.9;lineage6 1
lineage4.1.3 2
lineage2.1;lineage4.3.2 1
lineage4.8.1 1
La1.7 1
lineage4.9;lineage9 3
M.canetti;lineage2.2.2;lineage6.2 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage2.2.1;lineage4.9 2
lineage4.1;lineage4.9 1
lineage4.1.1.3 4
lineage4.1.1.3;lineage4.9 2
M.canetti;lineage2.2 3
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage1.1.2 2
La3;lineage2.1;lineage6.3 1
La1.2.BCG 1
lineage2.2 4
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage1.2.1.1 1
La3;M.canetti;lineage4.8;lineage4.9 1
lineage1;lineage4.9 2
lineage4.3.4.1 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.1.1.1 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4.1;lineage4.8 2
lineage4.4.1.1 3
lineage4.2.1 2
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage4.2;lineage4.6.3;lineage4.9 1
lineage4.1 1
La1;lineage4.1.2 1
M.canetti;lineage2.1 1
lineage4.9.1 1
La1.4 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage3;lineage4.9 1
lineage5.1.4 1
lineage4.7 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage1.1.3.1 1
lineage3.1.2.1;lineage4 1
La1.6;lineage4 1
La3;M.canetti;lineage4.9 2
lineage1.1.2;lineage4 1
lineage4.2.1.1;lineage4.3.3 1
lineage4.8 4
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La3;lineage1.1.2 1
La1.8.1 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1;lineage2;lineage4.9 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage2.2.1;lineage4 2
M.canetti;lineage2.1;lineage4 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
La1.6;La3;M.canetti;lineage4.2.2 1
La1.7.X-unk4;lineage4.9 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage4.1.2 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
La1.6;La3;lineage4.9 2
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage2.2.1;lineage3 1
lineage4.9;lineage6.1.3 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage2.2.1;lineage6.3 1
spoligotype Counts
spoligotype Count
None 633
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR2513470 Other lineage4.2.2.2 None
SRR6045219 HR-TB lineage4.9 None
ERR124636 HR-TB lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR176778 HR-TB lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
ERR4816470 HR-TB lineage3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR3283032 Other lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675582 Other lineage4.9 None
ERR400336 Sensitive lineage4.9 None
SRR3675580 Sensitive lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR3675248 Other lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR400326 Other lineage4.9 None
ERR1873393 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797043 Sensitive lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR6046382 RR-TB lineage2.2.1 None
SRR9971270 RR-TB lineage2.2.1 None
ERR4872094 MDR-TB lineage5.2 None
SRR10808805 Other La1;lineage4.9 None
ERR5917710 RR-TB lineage4.1.2.1 None
SRR069989 HR-TB lineage2.2.2 None
SRR5341323 Sensitive lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR3675585 HR-TB lineage4.9 None
ERR751326 Other lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323037 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
SRR21732980 Other lineage4.3.3 None
ERR4819877 HR-TB lineage4.9 None
ERR176751 HR-TB lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR3468544 RR-TB lineage2.1;lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
SRR13423544 Other lineage4.5 None
SRR3675541 Sensitive lineage4.9 None
SRR9971112 HR-TB lineage2.2.1 None
SRR3675387 Other lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR8665994 RR-TB lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR4812155 Other lineage4.9 None
ERR3283042 HR-TB lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR14066533 RR-TB lineage1.1.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR926164 Other lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR4816656 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR473332 Other lineage4.9 None
ERR12015083 Other La3;lineage4.8 None
SRR1165628 Other La3;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR3675450 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR1158918 Other lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1196546 Other lineage4.9 None
SRR1180137 RR-TB lineage2.2.1 None
SRR1165423 RR-TB lineage4.1.2.1 None
ERR4769452 Other lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
SAMN02414850 Other lineage4.1.2.1 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR1180413 Sensitive lineage4.9 None
SRR1172817 Other La3 None
SRR6045191 Sensitive lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
SRR23961559 Other La1.7;lineage4.2 None
ERR2517475 Other lineage4 None
ERR502510 HR-TB lineage4.9 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675243 MDR-TB lineage4.9 None
SRR12708419 Other lineage4.3.3 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
ERR4819241 Other lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR7240492 MDR-TB La1.7.1 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR6046485 Other lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR7131023 Other lineage4.1.2.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR1180410 Sensitive lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
SRR3675568 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR502511 HR-TB lineage4.9 None
ERR3283028 Other La3;lineage4 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675572 Other None
SRR1184381 MDR-TB None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
ERR4815604 Other None
ERR11252612 Other La3;lineage4.9 None
SRR1184372 MDR-TB None
ERR4796577 HR-TB None
ERR11252736 Other lineage4.9 None
SRR7535086 Other None
SRR18213713 HR-TB None
ERR212001 HR-TB None
SRR3675236 Other None
ERR137286 Other lineage4.9 None
ERR6358979 HR-TB lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR6046611 Sensitive lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
SRR9971114 Other lineage2.2.1 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
ERR779852 HR-TB lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
ERR736817 HR-TB lineage4.3.4 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR5341330 Other lineage4.9 None
SRR1165506 Other lineage4.1.2.1 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR4769493 Other lineage4.9 None
ERR9787139 Other lineage6.3.1 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1180312 Sensitive lineage4.9 None
SRR1173118 Other lineage2.2.1 None
ERR323066 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
SRR1184346 HR-TB lineage3.1 None
SRR1173400 Other lineage4.9 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR926160 Other lineage4.9 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR4811031 Other lineage4.5 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811030 Other lineage4.9 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1063849 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR3797085 Other lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
ERR323036 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR3273109 HR-TB lineage4 None
ERR2446566 Other lineage4.9 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR3675522 Other lineage4.9 None
ERR926163 Other lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675488 Other La1.7;lineage4.9 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1180946 Sensitive lineage2;lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
ERR323039 MDR-TB La2;lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
ERR736831 Other lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR12708409 HR-TB lineage4.3.3 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
SRR5341453 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR3283014 Other La3;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR133825 HR-TB La1;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR1180444 Sensitive lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR14782405 HR-TB lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1162864 MDR-TB lineage4.1.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR3797046 HR-TB lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
SRR3675222 Other La1.7 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
ERR369156 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR5341467 Other lineage4.9 None
ERR9786711 Other lineage4.6.2.2 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR11465511 Other lineage4.3.4.2.1 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9786601 Other lineage4.1.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045892 Sensitive lineage4.9 None
ERR5908228 RR-TB lineage4.3.3 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2446382 Other lineage4 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR12708371 HR-TB lineage4.1.1.3 None
ERR3283018 HR-TB lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
SRR6046594 Other lineage4.9 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR6045233 Other M.canetti;lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341469 HR-TB lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR323038 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR11465510 Sensitive lineage4.3.4.2.1 None
ERR9119096 RR-TB lineage4.3.3 None
ERR736856 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR6045053 Other lineage4 None
ERR9786671 Other None
ERR9786843 Other None
SRR1640750 RR-TB None
ERR234659 HR-TB None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR9787197 Other None
ERR4816999 Other None
SRR28119777 Other lineage4.9 None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR245675 Sensitive lineage1.1.2 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797029 Other lineage4.9 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
SRR3675510 Sensitive La3;lineage4.9 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR176766 MDR-TB lineage2.1;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR176651 Other lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6046385 Sensitive lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
SRR3675549 Other lineage4.9 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046046 Other lineage4.9 None
SRR1167055 Other lineage4.1.2.1 None
ERR369151 Other lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR702405 HR-TB lineage4.9 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR212033 Other lineage4.9 None
SRR3675322 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR1183049 RR-TB lineage2.2 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR18910194 HR-TB lineage2.2.2 None
SRR5535933 Other lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
SRR1162740 Other lineage4.1.2.1 None
SRR20969708 HR-TB lineage2.2 None
ERR926165 Other lineage4.9 None
SRR6045832 Other lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR6046141 Other lineage4.9 None
SRR1167384 Other La3;lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
SRR3675473 Sensitive lineage4.9 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR1181349 Sensitive lineage4 None
SRR3675461 RR-TB lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR038268 MDR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR3675486 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR10315567 HR-TB lineage2.2.1 None
SRR3675477 Sensitive lineage4.9 None
ERR323058 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR11465151 Sensitive lineage4.3.4.1 None
SRR7496472 Other lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR323062 HR-TB lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR6046210 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
ERR2229143 RR-TB lineage4.9 None
ERR176779 HR-TB lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR12708413 HR-TB lineage4.1.1.3 None
SRR1180250 Other lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
SRR1175513 Sensitive lineage4.9 None
ERR4796254 Other lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR4816478 HR-TB lineage4 None
ERR3801503 Other lineage4.6.2.2 None
SRR1181289 RR-TB lineage2.2.1 None
ERR3797064 Other La3;lineage4.9 None
SRR1173767 MDR-TB lineage4.4.1.1 None
SRR12416842 HR-TB lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR6044815 RR-TB lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
ERR4818831 Other lineage3 None
ERR4819781 Other lineage2.2.1 None
ERR4797313 Sensitive lineage2.2.1 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR9786440 Other lineage4.1 None
SRR3675457 Other lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
SRR9970978 Other La1;lineage4.1.2 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR1180399 Sensitive lineage4.9 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
ERR3468607 RR-TB lineage4.9 None
ERR11465189 RR-TB lineage4.9.1 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
SRR16278274 Other La1.4 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR3675311 Other lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR6045952 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR216938 HR-TB La1.7;lineage4.9 None
SRR5341396 Other lineage3;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1183144 RR-TB lineage2.2.1 None
ERR473314 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR6359082 Other lineage4.9 None
ERR926155 Other lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR2513283 Sensitive lineage5.1.4 None
SRR11662690 HR-TB lineage4.9 None
SRR7496523 Other lineage4.7 None
ERR4811493 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR108125 RR-TB lineage4.9 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR181824 MDR-TB lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR1063896 HR-TB None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR6789626 Other None
SRR28351455 Other lineage3.1.2.1;lineage4 None
ERR2514692 Other None
SRR25827682 Other None
SRR28351554 Other La1.6;lineage4 None
SRR28119805 Other lineage4.9 None
SRR12708416 Sensitive None
ERR6866807 RR-TB lineage4.9 None
ERR752229 Other lineage4.5 None
SRR1196583 Other lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR4817692 MDR-TB lineage1.1.2;lineage4 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR736872 HR-TB lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR2514327 HR-TB lineage4.8 None
ERR4831616 MDR-TB lineage2.2.1 None
SRR3675507 RR-TB lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
ERR369157 Sensitive lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1173453 Other lineage4.4.1.1 None
SRR1180375 Sensitive lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR400320 Sensitive lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4821053 RR-TB lineage3 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6866639 HR-TB lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
SRR1196677 Other lineage2.2 None
ERR9786569 Other lineage4.8 None
ERR702406 Other lineage2.1 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR2693228 RR-TB lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
SRR1181020 Other lineage2.2.1 None
ERR176741 Other lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
SRR3675487 MDR-TB M.canetti;lineage4.9 None
ERR736848 Other lineage4.9 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
SRR6046564 Sensitive lineage4.9 None
SRR1791696 RR-TB La1.8.1 None
SRR1180226 HR-TB lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
SRR6045555 Other lineage4.9 None
SRR3675444 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323115 Sensitive lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
SRR13861381 HR-TB lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
SRR3675506 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR3797023 MDR-TB La1.8.1 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR2027263 Other lineage4 None
ERR9786526 Other lineage4.1;lineage4.8 None
ERR3283016 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR6046133 HR-TB lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
ERR176643 Other La3;lineage4.9 None
ERR176658 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR4798099 HR-TB lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR3275450 Other lineage4 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1180420 Sensitive lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR4818929 HR-TB lineage4.9 None
SRR6046878 Other lineage4.9 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR4819932 Other lineage4.7 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675558 MDR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
ERR4820773 HR-TB lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR4816466 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675561 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR6044942 HR-TB lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR3675210 Sensitive lineage4.9 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
SRR3675312 Sensitive lineage4.9 None
ERR4799025 Other lineage4.8 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4818536 Other lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR1181351 Sensitive lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR400345 Other lineage4.9 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR3675455 Sensitive lineage4.9 None
ERR387051 RR-TB lineage4.9 None
ERR926157 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR3675269 RR-TB lineage4.9 None
ERR2512770 Sensitive lineage4.2.1 None
ERR990545 RR-TB lineage3 None
SRR3675545 RR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR181887 Other lineage4.9 None
ERR323060 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
ERR4769521 RR-TB lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR2693254 Other La1.6;La3;lineage4.9 None