TB-Profiler result

Run: SRR069989

Summary

Run ID: SRR069989

Sample name:

Date: 02-04-2023 14:18:21

Number of reads: 1366546

Percentage reads mapped: 76.26

Strain: lineage2

Drug-resistance: HR-TB


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrA 7570 p.Ala90Val missense_variant 0.89 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.15 streptomycin
katG 2155108 c.1002_1003dupGA frameshift_variant 0.86 isoniazid
kasA 2518310 p.Asp66Asn missense_variant 1.0 isoniazid
embB 4247448 p.His312Arg missense_variant 0.16 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6123 p.Ala295Gly missense_variant 0.13
gyrB 6127 c.888G>C synonymous_variant 0.15
gyrB 6133 c.894G>C synonymous_variant 0.14
gyrB 6136 c.897G>A synonymous_variant 0.16
gyrB 6148 c.909C>G synonymous_variant 0.15
gyrB 6169 c.930C>G synonymous_variant 0.21
gyrA 6727 c.-575G>T upstream_gene_variant 0.14
gyrA 6730 c.-572A>G upstream_gene_variant 0.14
gyrA 6745 c.-557T>G upstream_gene_variant 0.14
gyrA 6760 c.-542G>C upstream_gene_variant 0.13
gyrA 6778 c.-524C>T upstream_gene_variant 0.18
gyrA 6793 c.-509T>C upstream_gene_variant 0.19
gyrB 6797 p.Gly520Thr missense_variant 0.21
gyrA 6824 c.-478C>T upstream_gene_variant 0.25
gyrA 6841 c.-461T>C upstream_gene_variant 0.23
gyrA 6844 c.-458T>G upstream_gene_variant 0.21
gyrA 6853 c.-449A>G upstream_gene_variant 0.16
gyrA 6856 c.-446T>C upstream_gene_variant 0.15
gyrA 6859 c.-443T>C upstream_gene_variant 0.14
gyrA 6862 c.-440C>G upstream_gene_variant 0.14
gyrA 6878 c.-424T>C upstream_gene_variant 0.15
gyrA 6881 c.-421T>C upstream_gene_variant 0.15
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7517 c.216G>A synonymous_variant 0.19
gyrA 7523 c.222C>G synonymous_variant 0.17
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7799 c.498A>G synonymous_variant 0.14
gyrA 7835 c.534A>G synonymous_variant 0.17
gyrA 7838 c.537C>G synonymous_variant 0.17
gyrA 7859 c.558A>C synonymous_variant 0.16
gyrA 8099 c.798T>C synonymous_variant 0.13
gyrA 8111 c.810G>C synonymous_variant 0.15
gyrA 8156 c.855T>C synonymous_variant 0.2
gyrA 8168 c.867A>G synonymous_variant 0.19
gyrA 8174 c.873C>G synonymous_variant 0.21
gyrA 8177 c.876A>C synonymous_variant 0.2
gyrA 8198 c.897T>C synonymous_variant 0.17
gyrA 8207 c.906T>C synonymous_variant 0.17
gyrA 8219 c.918T>C synonymous_variant 0.17
gyrA 8225 c.924T>C synonymous_variant 0.17
gyrA 8294 c.993T>C synonymous_variant 0.15
gyrA 8324 c.1023T>C synonymous_variant 0.19
gyrA 8342 c.1041G>C synonymous_variant 0.13
gyrA 8351 c.1050C>T synonymous_variant 0.14
gyrA 8393 c.1092T>C synonymous_variant 0.18
gyrA 8399 c.1098T>C synonymous_variant 0.24
gyrA 8420 c.1119T>C synonymous_variant 0.25
gyrA 8423 c.1122G>C synonymous_variant 0.23
gyrA 8442 c.1141C>T synonymous_variant 0.17
gyrA 8453 c.1152A>C synonymous_variant 0.19
gyrA 8498 c.1197C>T synonymous_variant 0.14
gyrA 8624 c.1323G>C synonymous_variant 0.19
gyrA 8627 c.1326C>G synonymous_variant 0.19
gyrA 8636 c.1335A>C synonymous_variant 0.14
gyrA 8642 c.1341A>G synonymous_variant 0.22
gyrA 8645 c.1344C>G synonymous_variant 0.22
gyrA 8672 c.1371A>G synonymous_variant 0.15
gyrA 8829 c.1528T>C synonymous_variant 0.17
gyrA 8852 c.1551T>C synonymous_variant 0.17
gyrA 8858 c.1557T>C synonymous_variant 0.17
gyrA 8867 c.1566A>G synonymous_variant 0.19
gyrA 8870 c.1569G>C synonymous_variant 0.15
gyrA 8873 c.1572A>C synonymous_variant 0.15
gyrA 8903 c.1602T>C synonymous_variant 0.14
gyrA 9200 c.1899A>G synonymous_variant 0.15
gyrA 9204 p.Ser635Thr missense_variant 0.18
gyrA 9227 c.1926C>G synonymous_variant 0.14
gyrA 9230 c.1929T>C synonymous_variant 0.14
gyrA 9233 c.1932C>T synonymous_variant 0.15
gyrA 9242 c.1941A>C synonymous_variant 0.16
gyrA 9252 p.Val651Ile missense_variant 0.14
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9644 c.2343T>C synonymous_variant 0.15
gyrA 9647 c.2346C>T synonymous_variant 0.15
gyrA 9650 c.2349G>C synonymous_variant 0.18
gyrA 9665 c.2364A>G synonymous_variant 0.16
gyrA 9666 p.Arg789Gly missense_variant 0.21
gyrA 9674 c.2373T>C synonymous_variant 0.32
gyrA 9677 c.2376C>T synonymous_variant 0.33
gyrA 9701 c.2400T>C synonymous_variant 0.3
gyrA 9704 c.2403T>C synonymous_variant 0.3
gyrA 9708 c.2407T>C synonymous_variant 0.26
gyrA 9722 c.2421C>T synonymous_variant 0.25
gyrA 9734 c.2433A>G synonymous_variant 0.15
fgd1 490887 c.105G>C synonymous_variant 0.27
fgd1 490902 c.120T>C synonymous_variant 0.22
fgd1 490905 c.123T>C synonymous_variant 0.19
fgd1 490911 c.129T>G synonymous_variant 0.16
fgd1 490917 c.135C>A synonymous_variant 0.15
fgd1 490921 p.Gln47Glu missense_variant 0.17
fgd1 491232 c.450T>C synonymous_variant 0.13
fgd1 491244 c.462T>C synonymous_variant 0.15
fgd1 491259 c.477T>C synonymous_variant 0.2
fgd1 491286 c.504G>C synonymous_variant 0.38
fgd1 491292 c.510G>C synonymous_variant 0.27
fgd1 491295 c.513C>G synonymous_variant 0.3
fgd1 491296 p.Val172Ile missense_variant 0.3
fgd1 491319 c.537G>C synonymous_variant 0.4
fgd1 491331 c.549G>A synonymous_variant 0.27
fgd1 491583 c.801G>A synonymous_variant 0.14
fgd1 491601 c.819T>C synonymous_variant 0.14
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575779 c.432A>G synonymous_variant 0.19
mshA 575821 c.474G>C synonymous_variant 0.2
mshA 575824 c.477T>G synonymous_variant 0.15
ccsA 620307 c.417C>G synonymous_variant 0.22
ccsA 620317 p.Val143Leu missense_variant 0.23
ccsA 620340 c.450C>G synonymous_variant 0.24
ccsA 620349 c.459A>G synonymous_variant 0.19
ccsA 620362 p.Ala158Thr missense_variant 0.24
ccsA 620367 c.477T>C synonymous_variant 0.17
ccsA 620730 c.840C>T synonymous_variant 0.14
ccsA 620778 c.888T>C synonymous_variant 0.15
ccsA 620784 c.894C>G synonymous_variant 0.14
ccsA 620787 c.897C>G synonymous_variant 0.14
rpoB 760130 p.Asp108Glu missense_variant 0.15
rpoB 760223 c.417T>C synonymous_variant 0.19
rpoB 760235 c.429T>C synonymous_variant 0.21
rpoB 760253 c.447T>C synonymous_variant 0.33
rpoB 760283 c.477G>C synonymous_variant 0.19
rpoB 760361 c.555T>C synonymous_variant 0.15
rpoB 760376 p.Asp190Glu missense_variant 0.19
rpoB 760406 c.600G>C synonymous_variant 0.25
rpoB 760418 c.612G>C synonymous_variant 0.17
rpoB 760424 c.618C>G synonymous_variant 0.19
rpoB 760430 c.624T>C synonymous_variant 0.21
rpoB 760591 p.Val262Ala missense_variant 0.17
rpoB 760611 c.805T>C synonymous_variant 0.22
rpoB 760634 c.828T>C synonymous_variant 0.21
rpoB 760646 c.840C>G synonymous_variant 0.2
rpoB 760655 c.849A>G synonymous_variant 0.15
rpoB 760661 c.855A>C synonymous_variant 0.17
rpoB 760886 c.1080A>G synonymous_variant 0.15
rpoB 760919 c.1113C>G synonymous_variant 0.19
rpoB 760925 c.1119T>C synonymous_variant 0.17
rpoB 760928 c.1122G>C synonymous_variant 0.17
rpoB 760934 c.1128C>T synonymous_variant 0.2
rpoB 760946 c.1140A>G synonymous_variant 0.25
rpoB 760970 c.1164G>C synonymous_variant 0.21
rpoB 760982 c.1176G>C synonymous_variant 0.13
rpoB 760985 c.1179G>C synonymous_variant 0.13
rpoB 760991 c.1185G>C synonymous_variant 0.19
rpoB 761021 c.1215G>C synonymous_variant 0.18
rpoB 761027 c.1221A>G synonymous_variant 0.19
rpoB 761036 c.1230G>C synonymous_variant 0.19
rpoB 761037 c.1231T>C synonymous_variant 0.19
rpoB 761051 c.1245G>T synonymous_variant 0.15
rpoB 761054 c.1248G>A synonymous_variant 0.14
rpoB 761222 c.1416G>C synonymous_variant 0.25
rpoB 761249 c.1443A>G synonymous_variant 0.33
rpoB 761255 c.1449T>G synonymous_variant 0.35
rpoB 761261 c.1455G>T synonymous_variant 0.32
rpoB 761297 c.1491C>T synonymous_variant 0.22
rpoB 761327 c.1521A>G synonymous_variant 0.16
rpoB 761360 c.1554T>C synonymous_variant 0.21
rpoB 761362 p.Ser519Thr missense_variant 0.21
rpoB 761373 p.Val523His missense_variant 0.18
rpoB 761414 c.1608A>G synonymous_variant 0.17
rpoB 761510 c.1704T>C synonymous_variant 0.19
rpoB 761531 c.1725C>G synonymous_variant 0.18
rpoB 761537 c.1731C>G synonymous_variant 0.17
rpoB 761813 c.2007T>C synonymous_variant 0.14
rpoB 761815 p.Ala670Glu missense_variant 0.14
rpoB 761924 c.2118G>A synonymous_variant 0.18
rpoB 761948 c.2142G>C synonymous_variant 0.28
rpoB 761954 c.2148C>G synonymous_variant 0.27
rpoB 761969 c.2163G>A synonymous_variant 0.31
rpoB 761999 c.2193G>C synonymous_variant 0.29
rpoB 762008 c.2202C>G synonymous_variant 0.24
rpoB 762014 c.2208C>T synonymous_variant 0.24
rpoB 762017 c.2211A>G synonymous_variant 0.18
rpoB 762053 c.2247T>C synonymous_variant 0.19
rpoB 762062 c.2256T>C synonymous_variant 0.22
rpoB 762065 c.2259T>C synonymous_variant 0.22
rpoB 762083 c.2277T>C synonymous_variant 0.15
rpoB 762086 c.2280G>C synonymous_variant 0.16
rpoB 762218 c.2412T>G synonymous_variant 0.14
rpoB 762284 c.2478G>C synonymous_variant 0.2
rpoB 762293 c.2487T>C synonymous_variant 0.14
rpoB 762329 c.2523G>C synonymous_variant 0.14
rpoB 762338 c.2532T>C synonymous_variant 0.15
rpoB 762347 c.2541T>C synonymous_variant 0.17
rpoB 762369 c.2563T>C synonymous_variant 0.18
rpoC 762374 c.-996G>C upstream_gene_variant 0.21
rpoC 762380 c.-990T>G upstream_gene_variant 0.23
rpoC 762395 c.-975G>C upstream_gene_variant 0.2
rpoC 762398 c.-972T>C upstream_gene_variant 0.24
rpoC 762401 c.-969G>C upstream_gene_variant 0.2
rpoC 762404 c.-966T>C upstream_gene_variant 0.19
rpoC 762410 c.-960T>C upstream_gene_variant 0.19
rpoC 762416 c.-954A>G upstream_gene_variant 0.2
rpoC 762443 c.-927G>T upstream_gene_variant 0.15
rpoC 762929 c.-441G>C upstream_gene_variant 0.39
rpoC 762989 c.-381G>C upstream_gene_variant 0.34
rpoC 762995 c.-375G>T upstream_gene_variant 0.32
rpoC 763028 c.-342T>C upstream_gene_variant 0.27
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.25
rpoC 763040 c.-330C>G upstream_gene_variant 0.26
rpoC 763070 c.-300T>C upstream_gene_variant 0.18
rpoC 763076 c.-294C>G upstream_gene_variant 0.15
rpoC 763115 c.-255T>C upstream_gene_variant 0.17
rpoC 763136 c.-234C>T upstream_gene_variant 0.24
rpoC 763148 c.-222G>C upstream_gene_variant 0.24
rpoC 763158 c.-212C>T upstream_gene_variant 0.26
rpoC 763166 c.-204A>G upstream_gene_variant 0.19
rpoC 763169 c.-201A>G upstream_gene_variant 0.19
rpoC 763441 c.72C>G synonymous_variant 0.17
rpoC 763444 c.75T>C synonymous_variant 0.15
rpoC 763456 c.87A>G synonymous_variant 0.18
rpoC 763468 c.99G>C synonymous_variant 0.18
rpoC 763486 c.117T>C synonymous_variant 0.15
rpoC 763528 c.159G>A synonymous_variant 0.14
rpoC 763546 c.177A>G synonymous_variant 0.18
rpoC 763570 c.201G>C synonymous_variant 0.12
rpoC 763594 c.225C>T synonymous_variant 0.16
rpoC 763633 c.264T>C synonymous_variant 0.14
rpoC 763642 c.273G>C synonymous_variant 0.14
rpoC 763765 c.396T>C synonymous_variant 0.15
rpoC 763768 c.399C>G synonymous_variant 0.16
rpoC 763780 c.411C>G synonymous_variant 0.19
rpoC 763783 c.414G>C synonymous_variant 0.15
rpoC 763801 c.432C>G synonymous_variant 0.18
rpoC 763807 c.438T>C synonymous_variant 0.15
rpoC 763835 p.Ala156Met missense_variant 0.12
rpoC 763858 c.489A>G synonymous_variant 0.2
rpoC 763872 p.Gly168Ala missense_variant 0.16
rpoC 763978 c.609C>G synonymous_variant 0.15
rpoC 764005 c.636G>C synonymous_variant 0.19
rpoC 764011 c.642T>C synonymous_variant 0.19
rpoC 764024 c.655T>C synonymous_variant 0.25
rpoC 764040 p.Ser224Asn missense_variant 0.18
rpoC 764044 c.675T>C synonymous_variant 0.17
rpoC 764059 c.690G>C synonymous_variant 0.28
rpoC 764083 c.714A>G synonymous_variant 0.3
rpoC 764098 c.729A>G synonymous_variant 0.25
rpoC 764101 c.732C>G synonymous_variant 0.23
rpoC 764110 c.741C>T synonymous_variant 0.25
rpoC 764131 c.762T>C synonymous_variant 0.19
rpoC 764161 c.792G>C synonymous_variant 0.19
rpoC 764188 c.819A>G synonymous_variant 0.19
rpoC 764195 p.Ser276Gln missense_variant 0.18
rpoC 764203 c.834G>T synonymous_variant 0.21
rpoC 764206 c.837T>C synonymous_variant 0.22
rpoC 764257 c.888G>C synonymous_variant 0.17
rpoC 764266 c.897T>C synonymous_variant 0.17
rpoC 764269 c.900G>C synonymous_variant 0.17
rpoC 764282 c.913_915delTCGinsAGC synonymous_variant 0.14
rpoC 764365 c.996C>T synonymous_variant 0.44
rpoC 764380 c.1011G>C synonymous_variant 0.24
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.24
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.22
rpoC 764405 c.1036A>C synonymous_variant 0.19
rpoC 764434 c.1065A>G synonymous_variant 0.15
rpoC 764446 c.1077T>C synonymous_variant 0.17
rpoC 764449 c.1080G>C synonymous_variant 0.18
rpoC 764452 c.1083T>C synonymous_variant 0.18
rpoC 764458 c.1089G>C synonymous_variant 0.19
rpoC 764461 c.1092A>G synonymous_variant 0.18
rpoC 764497 c.1128A>G synonymous_variant 0.2
rpoC 764503 c.1134G>C synonymous_variant 0.17
rpoC 764521 c.1152T>C synonymous_variant 0.13
rpoC 764539 c.1170C>G synonymous_variant 0.14
rpoC 764560 c.1191T>C synonymous_variant 0.21
rpoC 764566 c.1197C>G synonymous_variant 0.23
rpoC 764573 c.1204_1206delCTTinsTTG synonymous_variant 0.21
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.2
rpoC 764581 c.1212T>C synonymous_variant 0.19
rpoC 764626 c.1257C>T synonymous_variant 0.35
rpoC 764632 c.1263T>C synonymous_variant 0.38
rpoC 764650 c.1281G>T synonymous_variant 0.5
rpoC 764695 c.1326T>C synonymous_variant 0.47
rpoC 764716 c.1347G>C synonymous_variant 0.29
rpoC 764752 c.1383G>C synonymous_variant 0.2
rpoC 764764 c.1395T>C synonymous_variant 0.19
rpoC 764791 c.1422C>G synonymous_variant 0.26
rpoC 764809 c.1440C>T synonymous_variant 0.23
rpoC 764812 c.1443C>G synonymous_variant 0.19
rpoC 764815 c.1446A>G synonymous_variant 0.2
rpoC 764824 c.1455T>C synonymous_variant 0.17
rpoC 764830 c.1461C>G synonymous_variant 0.16
rpoC 764968 c.1599T>C synonymous_variant 0.22
rpoC 764995 c.1626C>G synonymous_variant 0.16
rpoC 765103 c.1734G>A synonymous_variant 0.13
rpoC 765287 c.1918C>T synonymous_variant 0.21
rpoC 765292 c.1923G>T synonymous_variant 0.14
rpoC 765352 c.1983G>C synonymous_variant 0.15
rpoC 765383 p.Met672Leu missense_variant 0.26
rpoC 765404 p.Leu679Val missense_variant 0.16
rpoC 765409 c.2040T>C synonymous_variant 0.14
rpoC 765412 c.2043T>C synonymous_variant 0.14
rpoC 765421 c.2052C>G synonymous_variant 0.22
rpoC 765478 c.2109T>C synonymous_variant 0.14
rpoC 765499 c.2130C>G synonymous_variant 0.23
rpoC 765508 c.2139C>G synonymous_variant 0.31
rpoC 765541 c.2172C>G synonymous_variant 0.35
rpoC 765553 c.2184C>T synonymous_variant 0.23
rpoC 765556 c.2187G>C synonymous_variant 0.24
rpoC 765559 c.2190G>C synonymous_variant 0.24
rpoC 765578 c.2209C>T synonymous_variant 0.18
rpoC 765583 c.2214G>T synonymous_variant 0.2
rpoC 765613 p.His748Gln missense_variant 0.23
rpoC 765625 c.2256C>G synonymous_variant 0.25
rpoC 765628 c.2259G>C synonymous_variant 0.24
rpoC 765631 p.Asp754Glu missense_variant 0.27
rpoC 765658 c.2289C>T synonymous_variant 0.34
rpoC 765700 c.2331T>C synonymous_variant 0.31
rpoC 765734 c.2365T>C synonymous_variant 0.2
rpoC 765739 c.2370G>C synonymous_variant 0.16
rpoC 765796 c.2427C>T synonymous_variant 0.17
rpoC 765811 c.2442T>C synonymous_variant 0.19
rpoC 765814 c.2445A>G synonymous_variant 0.19
rpoC 765826 c.2457T>C synonymous_variant 0.2
rpoC 765835 c.2466C>T synonymous_variant 0.21
rpoC 765892 c.2523T>C synonymous_variant 0.18
rpoC 765928 c.2559C>G synonymous_variant 0.17
rpoC 765967 c.2598C>T synonymous_variant 0.17
rpoC 765979 c.2610C>G synonymous_variant 0.12
rpoC 765982 c.2613C>T synonymous_variant 0.13
rpoC 765985 c.2616C>T synonymous_variant 0.14
rpoC 765994 c.2625A>T synonymous_variant 0.16
rpoC 766009 c.2640G>C synonymous_variant 0.15
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.15
rpoC 766021 c.2652G>C synonymous_variant 0.15
rpoC 766486 c.3117A>C synonymous_variant 0.12
rpoC 766489 c.3120G>T synonymous_variant 0.14
rpoC 766531 c.3162G>T synonymous_variant 0.12
rpoC 766543 c.3174C>T synonymous_variant 0.2
rpoC 766549 c.3180G>C synonymous_variant 0.21
rpoC 766573 c.3204T>C synonymous_variant 0.25
rpoC 766583 p.Gly1072Ser missense_variant 0.26
rpoC 766588 c.3219G>A synonymous_variant 0.26
rpoC 766591 c.3222A>G synonymous_variant 0.24
rpoC 766607 p.Ile1080Leu missense_variant 0.17
rpoC 766630 c.3261G>C synonymous_variant 0.19
rpoC 766726 c.3357T>C synonymous_variant 0.21
rpoC 766738 c.3369G>T synonymous_variant 0.25
rpoC 766750 c.3381C>G synonymous_variant 0.18
rpoC 766765 c.3396A>C synonymous_variant 0.12
rpoC 766774 c.3405T>C synonymous_variant 0.14
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.2
rpoC 767059 c.3690T>G synonymous_variant 0.2
rpoC 767062 c.3693C>A synonymous_variant 0.2
rpoC 767074 c.3705T>C synonymous_variant 0.26
rpoC 767098 c.3729T>C synonymous_variant 0.25
rpoC 767119 c.3750A>G synonymous_variant 0.23
rpoC 767134 c.3765C>G synonymous_variant 0.22
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776053 c.2428T>C synonymous_variant 0.15
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776744 c.1737C>G synonymous_variant 0.15
mmpL5 777203 c.1278G>C synonymous_variant 0.16
mmpL5 777206 c.1275A>G synonymous_variant 0.17
mmpL5 777214 p.Ala423Thr missense_variant 0.16
mmpL5 777245 c.1236G>C synonymous_variant 0.15
mmpL5 777254 c.1227G>C synonymous_variant 0.13
mmpL5 777398 c.1083G>A synonymous_variant 0.17
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781649 c.90T>C synonymous_variant 0.17
rpsL 781655 c.96T>C synonymous_variant 0.18
rpsL 781682 c.123T>C synonymous_variant 0.24
rpsL 781715 c.156T>C synonymous_variant 0.26
rpsL 781728 c.169T>C synonymous_variant 0.18
rpsL 781736 c.177T>C synonymous_variant 0.17
rpsL 781751 c.192G>C synonymous_variant 0.17
rpsL 781754 c.195G>C synonymous_variant 0.19
rpsL 781760 c.201T>C synonymous_variant 0.27
rpsL 781793 c.234G>C synonymous_variant 0.24
rpsL 781832 c.273T>C synonymous_variant 0.24
rpsL 781841 c.282C>G synonymous_variant 0.18
rpsL 781859 c.300T>C synonymous_variant 0.16
rplC 800612 c.-197A>G upstream_gene_variant 0.13
rplC 800648 c.-161A>C upstream_gene_variant 0.19
rplC 800654 c.-155T>C upstream_gene_variant 0.16
rplC 800738 c.-71T>C upstream_gene_variant 0.14
rplC 800771 c.-38C>T upstream_gene_variant 0.14
rplC 801174 c.366T>C synonymous_variant 0.14
rplC 801222 c.414T>C synonymous_variant 0.25
rplC 801228 c.420T>C synonymous_variant 0.25
fbiC 1303818 c.888C>G synonymous_variant 0.18
fbiC 1303836 c.906G>C synonymous_variant 0.17
fbiC 1303845 c.915C>G synonymous_variant 0.18
fbiC 1303846 p.Phe306Val missense_variant 0.21
fbiC 1303854 c.924T>C synonymous_variant 0.24
fbiC 1303860 c.930A>C synonymous_variant 0.27
fbiC 1303881 c.951G>C synonymous_variant 0.23
fbiC 1303884 c.954T>G synonymous_variant 0.18
fbiC 1303981 p.Val351Ile missense_variant 0.16
fbiC 1303995 c.1065C>T synonymous_variant 0.24
fbiC 1304001 c.1071C>G synonymous_variant 0.22
fbiC 1304565 c.1635C>G synonymous_variant 0.14
fbiC 1304580 c.1650T>C synonymous_variant 0.13
fbiC 1304613 c.1683T>C synonymous_variant 0.17
fbiC 1304832 c.1902C>G synonymous_variant 0.15
fbiC 1305311 p.Arg794Gln missense_variant 0.14
fbiC 1305331 p.Glu801Asn missense_variant 0.24
fbiC 1305336 c.2406T>C synonymous_variant 0.24
fbiC 1305381 c.2451G>C synonymous_variant 0.28
fbiC 1305397 p.Glu823Gln missense_variant 0.18
fbiC 1305405 c.2475A>G synonymous_variant 0.15
Rv1258c 1406660 c.681C>G synonymous_variant 0.13
Rv1258c 1406668 c.673T>C synonymous_variant 0.13
Rv1258c 1406695 p.Leu216Val missense_variant 0.12
Rv1258c 1406765 p.Gln192His missense_variant 0.2
atpE 1461219 c.175T>C synonymous_variant 0.16
atpE 1461224 c.180T>C synonymous_variant 0.16
atpE 1461233 c.189A>G synonymous_variant 0.2
atpE 1461254 c.210T>C synonymous_variant 0.13
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.21
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.19
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.18
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.17
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.12
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.21
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.17
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.14
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.27
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.24
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.33
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.32
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.21
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.21
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.14
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.41
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.32
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.29
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.28
rrl 1474051 n.394T>C non_coding_transcript_exon_variant 0.23
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.2
rrl 1474056 n.399T>C non_coding_transcript_exon_variant 0.26
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.27
rrl 1474104 n.447G>A non_coding_transcript_exon_variant 0.27
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.21
rrl 1474112 n.455T>A non_coding_transcript_exon_variant 0.21
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.3
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.26
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.33
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.25
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.3
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.31
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.26
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.26
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.38
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.19
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.24
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.25
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.29
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.31
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.36
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.4
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.38
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.32
rrl 1475271 n.1614A>C non_coding_transcript_exon_variant 0.3
rrl 1475273 n.1616T>A non_coding_transcript_exon_variant 0.3
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.26
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.32
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.28
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.2
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.41
rrl 1475369 n.1712G>C non_coding_transcript_exon_variant 0.33
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.17
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.17
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.15
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.17
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.23
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.19
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.15
rrl 1476025 n.2368G>T non_coding_transcript_exon_variant 0.14
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.14
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.13
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.15
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.25
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.25
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.19
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.18
inhA 1674216 c.15G>C synonymous_variant 0.19
inhA 1674231 c.30T>C synonymous_variant 0.12
inhA 1674444 c.243G>T synonymous_variant 0.13
inhA 1674507 c.306G>C synonymous_variant 0.14
inhA 1674549 c.348G>C synonymous_variant 0.15
inhA 1674555 c.354G>A synonymous_variant 0.18
inhA 1674561 c.360C>T synonymous_variant 0.13
inhA 1674564 c.363C>T synonymous_variant 0.13
inhA 1674624 c.423A>C synonymous_variant 0.17
inhA 1674627 c.426T>G synonymous_variant 0.17
inhA 1674630 c.429C>G synonymous_variant 0.19
inhA 1674636 c.435C>G synonymous_variant 0.19
inhA 1674639 c.438C>T synonymous_variant 0.19
inhA 1674654 c.453G>C synonymous_variant 0.17
inhA 1674693 c.492C>G synonymous_variant 0.15
rpsA 1833568 c.27G>C synonymous_variant 0.18
rpsA 1833589 c.48A>T synonymous_variant 0.19
rpsA 1833595 c.54T>C synonymous_variant 0.23
rpsA 1833619 c.78A>C synonymous_variant 0.3
rpsA 1833661 c.120A>G synonymous_variant 0.33
rpsA 1833667 c.126C>G synonymous_variant 0.29
rpsA 1833724 c.183C>G synonymous_variant 0.38
rpsA 1833727 c.186G>C synonymous_variant 0.34
rpsA 1833742 c.201A>G synonymous_variant 0.38
rpsA 1833745 c.204G>C synonymous_variant 0.31
rpsA 1833787 c.246C>G synonymous_variant 0.26
rpsA 1833790 c.249T>A synonymous_variant 0.23
rpsA 1833799 c.258C>G synonymous_variant 0.22
rpsA 1833811 c.270G>C synonymous_variant 0.23
rpsA 1833838 c.297G>C synonymous_variant 0.28
rpsA 1833841 c.300C>G synonymous_variant 0.23
rpsA 1833847 c.306C>G synonymous_variant 0.28
rpsA 1833856 c.315A>G synonymous_variant 0.25
rpsA 1833862 c.321G>T synonymous_variant 0.2
rpsA 1833874 c.333T>C synonymous_variant 0.24
rpsA 1833928 c.387G>C synonymous_variant 0.31
rpsA 1833940 c.399C>G synonymous_variant 0.36
rpsA 1833970 c.429G>C synonymous_variant 0.32
rpsA 1833979 c.438T>C synonymous_variant 0.28
rpsA 1834000 c.459G>C synonymous_variant 0.26
rpsA 1834015 c.474G>C synonymous_variant 0.21
rpsA 1834021 c.480C>T synonymous_variant 0.26
rpsA 1834097 c.556_557delTCinsAG synonymous_variant 0.26
rpsA 1834102 c.561T>C synonymous_variant 0.28
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 0.13
rpsA 1834297 c.756C>G synonymous_variant 0.21
rpsA 1834303 c.762T>G synonymous_variant 0.19
rpsA 1834306 c.765T>C synonymous_variant 0.23
rpsA 1834348 c.807T>C synonymous_variant 0.27
rpsA 1834366 c.825A>G synonymous_variant 0.21
rpsA 1834375 c.834G>A synonymous_variant 0.2
rpsA 1834411 c.870T>C synonymous_variant 0.15
rpsA 1834498 c.957C>T synonymous_variant 0.13
rpsA 1834558 c.1017C>G synonymous_variant 0.16
rpsA 1834606 c.1065C>G synonymous_variant 0.24
rpsA 1834609 c.1068T>C synonymous_variant 0.23
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.22
rpsA 1834633 c.1092A>G synonymous_variant 0.16
rpsA 1834639 c.1098T>C synonymous_variant 0.21
rpsA 1834666 c.1125G>C synonymous_variant 0.21
rpsA 1834669 c.1128G>C synonymous_variant 0.22
rpsA 1834688 c.1147_1149delAGTinsTCC synonymous_variant 0.2
rpsA 1834726 c.1185C>A synonymous_variant 0.16
rpsA 1834732 c.1191T>C synonymous_variant 0.16
rpsA 1834733 p.Ala398Pro missense_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918185 c.246G>T synonymous_variant 0.14
ndh 2101906 c.1137G>C synonymous_variant 0.16
ndh 2101915 c.1128T>C synonymous_variant 0.21
ndh 2101918 c.1123_1125delAGGinsCGC synonymous_variant 0.21
ndh 2101924 c.1119T>G synonymous_variant 0.25
ndh 2101939 c.1104A>C synonymous_variant 0.3
ndh 2101960 c.1083A>G synonymous_variant 0.34
ndh 2101966 c.1077T>G synonymous_variant 0.28
ndh 2101972 c.1071G>C synonymous_variant 0.29
ndh 2101978 p.Asn355Asp missense_variant 0.28
ndh 2101988 p.Ala352Gly missense_variant 0.25
ndh 2102009 p.Ser345Asn missense_variant 0.27
ndh 2102020 c.1023A>G synonymous_variant 0.32
ndh 2102023 c.1020G>C synonymous_variant 0.3
ndh 2102026 c.1017G>C synonymous_variant 0.32
ndh 2102050 c.993T>C synonymous_variant 0.23
ndh 2102053 c.990G>C synonymous_variant 0.26
ndh 2102059 c.984T>C synonymous_variant 0.26
ndh 2102065 c.978G>C synonymous_variant 0.17
ndh 2102218 c.825C>G synonymous_variant 0.19
ndh 2102233 c.810G>A synonymous_variant 0.29
ndh 2102242 c.801G>A synonymous_variant 0.27
ndh 2102305 c.738T>C synonymous_variant 0.27
ndh 2102317 c.726A>G synonymous_variant 0.17
ndh 2102323 c.720C>G synonymous_variant 0.17
ndh 2102644 c.399A>G synonymous_variant 0.14
ndh 2102893 c.150G>T synonymous_variant 0.14
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517947 c.-168C>T upstream_gene_variant 0.18
kasA 2517974 c.-141T>C upstream_gene_variant 0.19
kasA 2517989 c.-126T>C upstream_gene_variant 0.21
kasA 2517992 c.-123C>G upstream_gene_variant 0.21
kasA 2518019 c.-96A>G upstream_gene_variant 0.16
kasA 2518025 c.-90G>C upstream_gene_variant 0.14
kasA 2518504 c.390T>C synonymous_variant 0.18
kasA 2518506 p.Ala131Glu missense_variant 0.18
kasA 2518519 c.405G>C synonymous_variant 0.23
kasA 2518528 c.414C>G synonymous_variant 0.25
kasA 2518540 c.426T>G synonymous_variant 0.2
kasA 2518561 c.447T>C synonymous_variant 0.25
kasA 2518609 p.Met165Ile missense_variant 0.27
kasA 2518621 c.507G>A synonymous_variant 0.2
kasA 2518642 c.528A>G synonymous_variant 0.22
kasA 2518663 c.549T>C synonymous_variant 0.22
kasA 2518672 c.558G>C synonymous_variant 0.15
kasA 2518687 c.573C>T synonymous_variant 0.2
kasA 2518696 c.582C>G synonymous_variant 0.29
kasA 2518702 c.588C>T synonymous_variant 0.35
kasA 2518711 c.597A>G synonymous_variant 0.32
kasA 2518714 c.600A>C synonymous_variant 0.29
kasA 2518717 c.603C>T synonymous_variant 0.27
kasA 2518732 c.618C>G synonymous_variant 0.22
kasA 2518741 c.627G>C synonymous_variant 0.21
kasA 2518747 c.633C>G synonymous_variant 0.26
kasA 2518768 c.654C>G synonymous_variant 0.17
kasA 2519017 c.903G>T synonymous_variant 0.15
kasA 2519125 c.1011C>T synonymous_variant 0.13
kasA 2519167 c.1053T>C synonymous_variant 0.17
kasA 2519173 c.1059C>G synonymous_variant 0.24
kasA 2519176 c.1062G>A synonymous_variant 0.24
ahpC 2726579 c.387T>C synonymous_variant 0.15
ahpC 2726591 c.399C>G synonymous_variant 0.15
ahpC 2726593 p.Val134Ala missense_variant 0.17
ahpC 2726600 c.408T>C synonymous_variant 0.2
ahpC 2726612 c.420C>G synonymous_variant 0.18
ahpC 2726638 p.Ala149Val missense_variant 0.17
ahpC 2726645 c.453C>G synonymous_variant 0.2
ahpC 2726657 c.465A>C synonymous_variant 0.2
ahpC 2726669 p.Asp159Glu missense_variant 0.21
ahpC 2726672 c.480G>A synonymous_variant 0.18
ahpC 2726681 c.489A>G synonymous_variant 0.19
ahpC 2726696 c.504C>G synonymous_variant 0.13
folC 2746555 c.1044G>T synonymous_variant 0.19
folC 2746561 c.1038C>A synonymous_variant 0.21
folC 2746564 c.1035A>C synonymous_variant 0.21
folC 2746576 c.1023C>A synonymous_variant 0.18
folC 2746582 c.1015_1017delTTGinsCTT synonymous_variant 0.17
folC 2747065 c.534C>G synonymous_variant 0.12
folC 2747086 c.513A>C synonymous_variant 0.15
folC 2747089 c.510G>C synonymous_variant 0.12
folC 2747289 p.Pro104Ala missense_variant 0.14
pepQ 2860602 c.-184A>C upstream_gene_variant 0.29
Rv2752c 3064980 c.1212C>G synonymous_variant 0.17
Rv2752c 3064995 c.1197C>G synonymous_variant 0.2
Rv2752c 3064998 c.1194A>G synonymous_variant 0.25
Rv2752c 3065018 p.Asn392His missense_variant 0.22
Rv2752c 3065268 c.924A>G synonymous_variant 0.15
thyX 3067619 c.327A>C synonymous_variant 0.18
thyX 3067640 c.306G>C synonymous_variant 0.2
thyX 3067643 c.303C>T synonymous_variant 0.19
thyX 3067652 c.294T>C synonymous_variant 0.19
thyX 3067661 c.285C>G synonymous_variant 0.23
thyX 3067682 c.264G>C synonymous_variant 0.19
thyX 3067685 c.261A>G synonymous_variant 0.19
thyX 3067688 c.258G>C synonymous_variant 0.21
thyX 3067694 c.252G>C synonymous_variant 0.22
thyX 3067718 c.228C>G synonymous_variant 0.15
thyX 3067727 c.219A>C synonymous_variant 0.14
thyX 3067739 c.207T>C synonymous_variant 0.17
thyX 3067742 c.204A>C synonymous_variant 0.17
thyX 3067850 c.96A>C synonymous_variant 0.14
thyX 3067869 p.Thr26Ser missense_variant 0.29
thyX 3067874 c.72C>G synonymous_variant 0.27
thyX 3067883 c.63C>G synonymous_variant 0.2
thyX 3067886 c.60A>C synonymous_variant 0.2
thyX 3067889 c.57C>G synonymous_variant 0.2
thyX 3067894 c.52T>C synonymous_variant 0.17
thyX 3068063 c.-118C>A upstream_gene_variant 0.17
thyA 3073902 c.570C>G synonymous_variant 0.14
thyA 3073925 c.547T>C synonymous_variant 0.14
thyA 3073929 c.543T>C synonymous_variant 0.13
thyA 3073989 c.483T>C synonymous_variant 0.14
thyA 3074004 c.468T>C synonymous_variant 0.13
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339040 c.-78T>C upstream_gene_variant 1.0
fprA 3473809 c.-198G>C upstream_gene_variant 0.19
fprA 3473812 c.-195G>A upstream_gene_variant 0.21
fprA 3473836 c.-171C>A upstream_gene_variant 0.23
fprA 3473843 c.-164C>G upstream_gene_variant 0.23
fprA 3473848 c.-159_-157delCAAinsGAG upstream_gene_variant 0.2
fprA 3473878 c.-129G>T upstream_gene_variant 0.14
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474171 c.165G>C synonymous_variant 0.14
fprA 3474177 c.171C>T synonymous_variant 0.17
fprA 3474204 c.198A>G synonymous_variant 0.14
fprA 3474610 p.Pro202Thr missense_variant 0.13
fprA 3474942 c.936G>A synonymous_variant 0.18
fprA 3474948 c.942A>G synonymous_variant 0.2
fprA 3474950 p.Ala315Val missense_variant 0.2
fprA 3474960 c.954C>G synonymous_variant 0.18
fprA 3474966 c.960G>C synonymous_variant 0.2
fprA 3474984 c.978G>C synonymous_variant 0.25
fprA 3475061 p.Pro352Arg missense_variant 0.25
fprA 3475068 c.1062A>G synonymous_variant 0.25
fprA 3475074 c.1068C>G synonymous_variant 0.25
fprA 3475077 c.1071C>G synonymous_variant 0.22
fprA 3475104 c.1098G>C synonymous_variant 0.21
Rv3236c 3612667 c.450T>G synonymous_variant 0.14
Rv3236c 3612673 c.444G>C synonymous_variant 0.14
Rv3236c 3612676 c.441A>G synonymous_variant 0.13
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
fbiB 3641930 p.Leu132Phe missense_variant 0.22
alr 3840248 c.1173C>G synonymous_variant 0.14
alr 3840274 p.Val383Leu missense_variant 0.13
alr 3840275 c.1146T>G synonymous_variant 0.13
rpoA 3877482 c.1026C>G synonymous_variant 0.16
rpoA 3877494 p.Glu338Asp missense_variant 0.25
rpoA 3877503 c.1005G>C synonymous_variant 0.23
rpoA 3877507 p.Gly334Ala missense_variant 0.24
rpoA 3877515 c.993G>C synonymous_variant 0.23
rpoA 3877542 c.966C>T synonymous_variant 0.26
rpoA 3877553 p.Glu319Gln missense_variant 0.31
rpoA 3877557 c.951C>G synonymous_variant 0.31
rpoA 3877587 c.921A>G synonymous_variant 0.26
rpoA 3877613 p.Ile299Val missense_variant 0.15
rpoA 3877638 c.870T>C synonymous_variant 0.18
rpoA 3877704 c.804G>T synonymous_variant 0.17
rpoA 3877743 c.765T>C synonymous_variant 0.19
rpoA 3877839 c.669G>C synonymous_variant 0.16
rpoA 3877857 c.651G>A synonymous_variant 0.15
rpoA 3878346 c.162T>C synonymous_variant 0.15
rpoA 3878370 c.138T>C synonymous_variant 0.14
rpoA 3878376 c.132G>C synonymous_variant 0.18
rpoA 3878385 c.123C>G synonymous_variant 0.22
rpoA 3878391 c.117T>C synonymous_variant 0.22
rpoA 3878396 c.112C>T synonymous_variant 0.23
rpoA 3878436 c.72A>G synonymous_variant 0.27
rpoA 3878442 c.66G>C synonymous_variant 0.19
rpoA 3878454 c.54A>C synonymous_variant 0.18
rpoA 3878472 p.Asp12Glu missense_variant 0.15
clpC1 4038347 c.2358G>C synonymous_variant 0.18
clpC1 4038356 c.2349T>C synonymous_variant 0.23
clpC1 4038359 c.2346A>G synonymous_variant 0.29
clpC1 4038368 c.2337T>C synonymous_variant 0.25
clpC1 4038388 c.2317T>C synonymous_variant 0.26
clpC1 4038398 c.2307G>T synonymous_variant 0.22
clpC1 4038403 c.2302T>C synonymous_variant 0.16
clpC1 4038498 p.Ser736Thr missense_variant 0.21
clpC1 4038530 p.Glu725Asp missense_variant 0.2
clpC1 4038536 c.2169C>T synonymous_variant 0.17
clpC1 4038596 c.2109A>G synonymous_variant 0.17
clpC1 4038623 c.2082A>G synonymous_variant 0.15
clpC1 4038683 c.2022T>C synonymous_variant 0.21
clpC1 4038695 c.2010C>G synonymous_variant 0.23
clpC1 4038701 c.2004G>C synonymous_variant 0.22
clpC1 4038704 c.2001T>C synonymous_variant 0.22
clpC1 4038707 c.1998C>G synonymous_variant 0.21
clpC1 4038710 c.1995G>C synonymous_variant 0.19
clpC1 4038713 c.1992T>C synonymous_variant 0.18
clpC1 4038740 c.1965G>C synonymous_variant 0.22
clpC1 4038755 c.1950G>C synonymous_variant 0.19
clpC1 4038773 c.1932T>C synonymous_variant 0.17
clpC1 4038782 c.1923G>C synonymous_variant 0.15
clpC1 4038815 c.1890G>T synonymous_variant 0.14
clpC1 4038851 c.1854G>A synonymous_variant 0.35
clpC1 4038878 c.1827A>G synonymous_variant 0.43
clpC1 4038908 c.1797C>G synonymous_variant 0.19
clpC1 4038914 c.1791G>C synonymous_variant 0.22
clpC1 4038932 c.1773G>C synonymous_variant 0.17
clpC1 4038953 c.1752A>G synonymous_variant 0.18
clpC1 4038956 c.1749T>C synonymous_variant 0.17
clpC1 4038965 c.1740T>C synonymous_variant 0.17
clpC1 4038971 c.1734T>C synonymous_variant 0.15
clpC1 4038974 c.1731T>C synonymous_variant 0.17
clpC1 4038989 c.1716T>C synonymous_variant 0.21
clpC1 4038997 c.1708T>C synonymous_variant 0.25
clpC1 4039022 c.1683A>G synonymous_variant 0.24
clpC1 4039025 c.1680C>T synonymous_variant 0.76
clpC1 4039073 c.1632C>G synonymous_variant 0.15
clpC1 4039442 c.1263A>G synonymous_variant 0.17
clpC1 4039448 c.1257A>G synonymous_variant 0.18
clpC1 4039454 c.1251A>G synonymous_variant 0.2
clpC1 4039463 c.1242C>G synonymous_variant 0.21
clpC1 4039469 c.1236T>C synonymous_variant 0.18
clpC1 4039481 c.1224T>G synonymous_variant 0.25
clpC1 4039484 c.1221T>G synonymous_variant 0.37
clpC1 4039517 c.1188C>G synonymous_variant 0.2
clpC1 4039524 p.Phe394Tyr missense_variant 0.21
clpC1 4039526 c.1179G>C synonymous_variant 0.17
clpC1 4039586 c.1119G>C synonymous_variant 0.17
clpC1 4039610 c.1095G>C synonymous_variant 0.17
clpC1 4039616 c.1089G>C synonymous_variant 0.22
clpC1 4039622 c.1083C>G synonymous_variant 0.21
clpC1 4039682 c.1023C>G synonymous_variant 0.2
clpC1 4039685 c.1020C>T synonymous_variant 0.19
clpC1 4039724 c.981A>G synonymous_variant 0.2
clpC1 4039831 c.874T>C synonymous_variant 0.21
clpC1 4039832 c.873C>G synonymous_variant 0.21
clpC1 4039850 c.855T>C synonymous_variant 0.2
clpC1 4039865 c.840T>C synonymous_variant 0.24
clpC1 4039898 c.807C>G synonymous_variant 0.17
clpC1 4039904 c.801A>G synonymous_variant 0.18
clpC1 4039946 c.759A>T synonymous_variant 0.24
clpC1 4039952 c.753T>C synonymous_variant 0.21
clpC1 4039958 c.747G>C synonymous_variant 0.24
clpC1 4039979 c.726C>G synonymous_variant 0.2
clpC1 4039996 p.Glu237Gln missense_variant 0.15
clpC1 4040021 c.684A>C synonymous_variant 0.16
clpC1 4040153 c.552A>G synonymous_variant 0.13
clpC1 4040267 c.438A>G synonymous_variant 0.12
clpC1 4040426 c.279T>C synonymous_variant 0.13
clpC1 4040431 c.274T>C synonymous_variant 0.14
clpC1 4040444 c.261C>G synonymous_variant 0.15
clpC1 4040450 c.255A>G synonymous_variant 0.15
clpC1 4040459 c.246C>G synonymous_variant 0.13
clpC1 4040465 c.240T>C synonymous_variant 0.13
clpC1 4040662 c.43C>T synonymous_variant 0.12
panD 4044195 c.87T>C synonymous_variant 0.13
panD 4044213 c.69C>G synonymous_variant 0.17
embC 4240706 p.Val282Thr missense_variant 0.14
embC 4240726 c.864G>C synonymous_variant 0.24
embC 4240780 c.918T>C synonymous_variant 0.35
embC 4240783 c.921G>C synonymous_variant 0.34
embC 4240789 c.927T>C synonymous_variant 0.29
embC 4240819 c.957A>G synonymous_variant 0.23
embC 4240825 c.963G>A synonymous_variant 0.25
embC 4240831 c.969T>G synonymous_variant 0.17
embC 4240867 c.1005T>G synonymous_variant 0.18
embC 4240870 c.1008T>C synonymous_variant 0.2
embC 4240879 c.1017G>C synonymous_variant 0.17
embC 4240880 p.Ala340Thr missense_variant 0.18
embC 4240885 c.1023T>C synonymous_variant 0.19
embC 4240897 c.1035C>G synonymous_variant 0.19
embC 4240900 c.1038A>G synonymous_variant 0.2
embC 4240951 c.1089C>G synonymous_variant 0.19
embC 4240954 p.Ile364Met missense_variant 0.19
embC 4240957 c.1095C>G synonymous_variant 0.19
embC 4240966 c.1104G>T synonymous_variant 0.2
embC 4240979 p.Thr373Gln missense_variant 0.15
embC 4240983 p.Ser374Asn missense_variant 0.13
embC 4240990 c.1128A>G synonymous_variant 0.18
embC 4241050 c.1188T>G synonymous_variant 0.17
embC 4241104 c.1242G>A synonymous_variant 0.15
embC 4241203 c.1341T>C synonymous_variant 0.16
embC 4242446 p.Ala862Ser missense_variant 0.29
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4245137 c.1905T>C synonymous_variant 0.2
embA 4245149 c.1917C>G synonymous_variant 0.22
embA 4245194 c.1962G>C synonymous_variant 0.15
embA 4245198 p.Leu656Ile missense_variant 0.15
embA 4245206 c.1974A>G synonymous_variant 0.15
embA 4245207 c.1975T>C synonymous_variant 0.15
embA 4245215 c.1983A>G synonymous_variant 0.13
embA 4245885 p.Asp885Thr missense_variant 0.23
embA 4245892 p.Ile887Thr missense_variant 0.25
embB 4245905 c.-609C>G upstream_gene_variant 0.21
embA 4245927 p.Thr899Ala missense_variant 0.18
embB 4246621 c.108T>C synonymous_variant 0.15
embB 4246624 c.111C>G synonymous_variant 0.15
embB 4246627 c.114T>C synonymous_variant 0.14
embB 4246631 c.118T>C synonymous_variant 0.14
embB 4246639 c.126G>C synonymous_variant 0.13
embB 4246642 c.129G>C synonymous_variant 0.13
embB 4246645 c.132G>C synonymous_variant 0.13
embB 4246804 c.291G>T synonymous_variant 0.15
embB 4247068 c.555T>C synonymous_variant 0.15
embB 4247074 c.561G>C synonymous_variant 0.14
embB 4247101 c.588G>C synonymous_variant 0.17
embB 4247105 p.Pro198Ala missense_variant 0.17
embB 4247386 c.873T>C synonymous_variant 0.13
embB 4247389 c.876C>G synonymous_variant 0.16
embB 4247395 c.882C>G synonymous_variant 0.19
embB 4247401 c.888T>C synonymous_variant 0.19
embB 4247437 c.924A>G synonymous_variant 0.13
embB 4247440 c.927C>G synonymous_variant 0.16
embB 4247464 c.951C>G synonymous_variant 0.19
embB 4247470 c.957T>C synonymous_variant 0.18
embB 4247491 c.978G>C synonymous_variant 0.23
embB 4247497 c.984T>C synonymous_variant 0.2
embB 4247500 c.987C>G synonymous_variant 0.21
embB 4247536 c.1023C>T synonymous_variant 0.25
embB 4248085 c.1572T>C synonymous_variant 0.24
embB 4248097 c.1584C>G synonymous_variant 0.26
embB 4248118 c.1605T>C synonymous_variant 0.18
embB 4248127 c.1614G>C synonymous_variant 0.18
embB 4248133 c.1620C>G synonymous_variant 0.17
embB 4248142 c.1629T>C synonymous_variant 0.16
embB 4248143 c.1630T>C synonymous_variant 0.16
embB 4248206 p.Ser565Gly missense_variant 0.13
embB 4248241 c.1728C>T synonymous_variant 0.12
embB 4248265 c.1752C>T synonymous_variant 0.25
embB 4248266 c.1753C>T synonymous_variant 0.25
embB 4248277 c.1764G>C synonymous_variant 0.29
embB 4248304 c.1791G>C synonymous_variant 0.24
embB 4248316 c.1803C>G synonymous_variant 0.12
embB 4248902 p.Thr797Pro missense_variant 1.0
aftB 4267647 p.Asp397Gly missense_variant 1.0
aftB 4269042 c.-206G>C upstream_gene_variant 0.14
ubiA 4269141 p.Leu231Val missense_variant 0.2
aftB 4269144 c.-308C>G upstream_gene_variant 0.2
ubiA 4269149 p.Val229Leu missense_variant 0.26
aftB 4269183 c.-347T>C upstream_gene_variant 0.23
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0