Rv3596c - c.1950G>C
Drug resistance types
118 Sensitive
8 RR-TB
105 HR-TB
25 MDR-TB
12 Pre-XDR-TB
0 XDR-TB
113 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 31 |
| lineage4.9 | 83 |
| lineage4.1 | 2 |
| lineage4 | 96 |
| 77 | |
| lineage4.3.3 | 6 |
| lineage3;lineage2.1 | 1 |
| lineage2.1 | 3 |
| lineage3 | 11 |
| lineage4.1.1.3 | 1 |
| lineage4.8 | 5 |
| lineage4;lineage2 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.2.1 | 18 |
| lineage1.1.2 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage5.1.4 | 1 |
| lineage1.1.1 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.9;lineage4.2.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1 | 1 |
| lineage5.2 | 4 |
| lineage2.2.1.1 | 1 |
| lineage3.1 | 2 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 1 |
| La1 | 1 |
| La1.8.1 | 6 |
| lineage4.3.4.1 | 1 |
| lineage4.5 | 2 |
| La1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage6.1.3 | 1 |
| lineage2 | 1 |
| lineage2.2.2 | 1 |
| lineage4.4.1.1 | 2 |
| La1.4 | 1 |
| La1.7.1 | 1 |
| lineage3.1.3 | 1 |
| lineage1.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 381 |
Geographic prevalence
Country level data for this variant is available for 9 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR8025636 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | lineage4.1 | None | ERR9806975 | Pre-XDR-TB | lineage2.2.1 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692858 | Sensitive | lineage4.9 | None | SRR8692807 | Other | lineage4.9 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692887 | Other | None | SRR3675455 | Sensitive | lineage4 | None | SRR8692905 | HR-TB | None | SRR8692824 | Other | lineage4.9 | None | SRR8692882 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | None | ERR4815296 | Sensitive | lineage4 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR4813861 | Other | lineage4.3.3 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675477 | Other | lineage4.9 | None | ERR4815310 | Other | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814690 | Sensitive | lineage2.2.1 | None | SRR3675229 | Other | lineage4 | None | SRR3675265 | Other | lineage4 | None | SRR3675234 | Other | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675279 | Other | None | SRR3675318 | Other | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | ERR4815550 | Other | lineage4 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675383 | HR-TB | None | SRR3675387 | Sensitive | None | ERR4816964 | Other | lineage4.9 | None | SRR3675522 | Other | None | SRR3675547 | Other | lineage4.9 | None | ERR3275220 | Other | lineage3 | nl | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | SRR3675545 | HR-TB | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675558 | HR-TB | None | ERR2446509 | Other | lineage3 | nl | ERR212121 | HR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR2446144 | Other | lineage3 | nl | ERR4818561 | HR-TB | lineage4 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR2509673 | Other | lineage2.2.1 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341425 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR3275215 | Other | lineage4.1.2.1 | nl | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341469 | Other | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693231 | Other | None | ERR4821053 | Other | lineage3 | None | ERR2693230 | Other | None | ERR2693239 | HR-TB | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | ERR2693254 | Other | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR2693257 | Other | None | SRR6046141 | Other | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6045264 | Sensitive | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045976 | Sensitive | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046250 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR2446118 | Other | lineage4.1.2.1 | nl | ERR278594 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | SRR6046514 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6325448 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325447 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | SRR6511621 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR4832002 | Pre-XDR-TB | lineage2.1 | None | ERR4872093 | MDR-TB | lineage5.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6981961 | Sensitive | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831638 | Sensitive | None | ERR502510 | Sensitive | lineage4 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR5311090 | HR-TB | None | ERR294248 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311099 | HR-TB | None | ERR502943 | HR-TB | None | ERR3275190 | Other | lineage3 | nl | ERR5311081 | HR-TB | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323038 | HR-TB | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR323055 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR067712 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035122 | Sensitive | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR1063855 | Other | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283008 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR349298 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797024 | Other | lineage4.9 | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797044 | Other | None | ERR3797043 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797061 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797082 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797083 | HR-TB | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR4188247 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4596902 | HR-TB | lineage3 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797313 | HR-TB | None | ERR4797474 | Other | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798431 | HR-TB | None | ERR4798099 | Other | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4798823 | HR-TB | lineage4 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6198317 | Other | La1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4812155 | Sensitive | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358837 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866022 | Other | None | ERR6866639 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736872 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR751326 | Sensitive | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119499 | MDR-TB | lineage5.2 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR8976043 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9896147 | Sensitive | lineage2.2.1 | None | SRR069989 | HR-TB | lineage2 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13861332 | Other | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13837642 | RR-TB | lineage4.9 | None | SRR13861180 | Other | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR15014682 | MDR-TB | lineage4.8 | None | SRR16156775 | Other | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1640750 | HR-TB | None | SRR17658565 | Other | lineage3 | None | SRR1791696 | Other | La1.8.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR2101360 | MDR-TB | lineage4.1.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None |
|---|
