TB-Profiler result

Run: ERR4819314
Summary

Run ID: ERR4819314

Sample name:

Date: 01-04-2023 16:02:38

Number of reads: 894096

Percentage reads mapped: 45.27

Strain: lineage1.1.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage1 Indo-Oceanic EAI RD239 0.91
lineage1.1 Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239 1.0
lineage1.1.1 Indo-Oceanic EAI4;EAI5 RD239 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.16 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6112 p.Met291Ile missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7629 p.Val110Ile missense_variant 0.16
gyrA 7658 c.357A>G synonymous_variant 0.18
gyrA 7661 c.360C>T synonymous_variant 0.17
gyrA 7664 c.363T>C synonymous_variant 0.17
gyrA 7667 c.366C>T synonymous_variant 0.16
gyrA 7670 c.369A>C synonymous_variant 0.17
gyrA 7671 p.Pro124Ala missense_variant 0.16
gyrA 7676 c.375G>C synonymous_variant 0.17
gyrA 7679 c.378G>C synonymous_variant 0.17
gyrA 7683 c.382_384delAGGinsCGT synonymous_variant 0.17
gyrA 7694 c.393A>G synonymous_variant 0.18
gyrA 7700 c.399G>C synonymous_variant 0.19
gyrA 7706 c.405C>G synonymous_variant 0.2
gyrA 7710 c.409T>C synonymous_variant 0.2
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.2
gyrA 7733 p.Glu144Asp missense_variant 0.21
gyrA 7748 c.447A>C synonymous_variant 0.22
gyrA 7759 p.Ile153Thr missense_variant 0.17
gyrA 7763 c.462T>G synonymous_variant 0.17
gyrA 8288 c.987T>C synonymous_variant 0.16
gyrA 8294 c.993T>C synonymous_variant 0.16
gyrA 8305 p.Thr335Ser missense_variant 0.16
gyrA 8324 c.1023T>C synonymous_variant 0.16
gyrA 8330 c.1029C>G synonymous_variant 0.16
gyrA 8339 c.1038A>G synonymous_variant 0.18
gyrA 8340 p.Ala347Ser missense_variant 0.18
gyrA 8366 c.1065G>C synonymous_variant 0.25
gyrA 8372 c.1071G>C synonymous_variant 0.21
gyrA 8382 p.Leu361Met missense_variant 0.16
gyrA 8393 c.1092T>C synonymous_variant 0.14
gyrA 8452 p.Ala384Val missense_variant 0.92
gyrA 8849 c.1548C>G synonymous_variant 0.19
gyrA 8852 c.1551T>C synonymous_variant 0.19
gyrA 8858 c.1557T>C synonymous_variant 0.21
gyrA 8864 c.1563C>G synonymous_variant 0.22
gyrA 8867 c.1566A>G synonymous_variant 0.22
gyrA 8870 c.1569G>C synonymous_variant 0.24
gyrA 8873 c.1572A>C synonymous_variant 0.28
gyrA 8894 c.1593C>G synonymous_variant 0.29
gyrA 8897 c.1596T>C synonymous_variant 0.33
gyrA 8903 c.1602T>C synonymous_variant 0.36
gyrA 8915 c.1614A>G synonymous_variant 0.37
gyrA 8933 c.1632G>C synonymous_variant 0.34
gyrA 8934 p.Gln545Lys missense_variant 0.36
gyrA 8939 c.1638T>C synonymous_variant 0.31
gyrA 8942 c.1641G>C synonymous_variant 0.31
gyrA 8944 p.Gly548Asp missense_variant 0.31
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.32
gyrA 8990 c.1689C>G synonymous_variant 0.32
gyrA 8996 c.1695T>C synonymous_variant 0.32
gyrA 8998 p.Leu566Trp missense_variant 0.33
gyrA 9018 p.Gln573Lys missense_variant 0.33
gyrA 9023 c.1722A>C synonymous_variant 0.3
gyrA 9026 c.1725G>C synonymous_variant 0.26
gyrA 9029 c.1728T>C synonymous_variant 0.25
gyrA 9032 c.1731T>C synonymous_variant 0.26
gyrA 9044 c.1743C>G synonymous_variant 0.25
gyrA 9050 p.Asp583Glu missense_variant 0.15
gyrA 9051 c.1750T>C synonymous_variant 0.16
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760088 c.282C>G synonymous_variant 0.32
rpoB 760091 c.285G>C synonymous_variant 0.31
rpoB 760101 c.295T>C synonymous_variant 0.32
rpoB 760106 c.300G>C synonymous_variant 0.33
rpoB 760112 c.306T>C synonymous_variant 0.33
rpoB 760115 c.309C>T synonymous_variant 0.33
rpoB 760118 c.312T>G synonymous_variant 0.34
rpoB 760121 c.315T>C synonymous_variant 0.31
rpoB 760130 p.Asp108Glu missense_variant 0.3
rpoB 760139 c.333A>C synonymous_variant 0.29
rpoB 760140 p.Pro112Ser missense_variant 0.29
rpoB 760143 p.Val113Ile missense_variant 0.29
rpoB 760148 p.Asp114Glu missense_variant 0.29
rpoB 760157 c.351A>G synonymous_variant 0.31
rpoB 760181 c.375T>C synonymous_variant 0.33
rpoB 760184 c.378A>G synonymous_variant 0.31
rpoB 760196 c.390C>G synonymous_variant 0.31
rpoB 760223 c.417T>C synonymous_variant 0.29
rpoB 760256 c.450C>T synonymous_variant 0.14
rpoB 760271 c.465C>G synonymous_variant 0.18
rpoB 760274 p.Glu156Asp missense_variant 0.18
rpoB 760283 c.477G>C synonymous_variant 0.19
rpoB 760298 c.492G>C synonymous_variant 0.18
rpoB 760357 p.Thr184Asn missense_variant 0.17
rpoB 760361 c.555T>C synonymous_variant 0.18
rpoB 760370 c.564C>G synonymous_variant 0.19
rpoB 760376 p.Asp190Glu missense_variant 0.21
rpoB 760380 p.Thr192Pro missense_variant 0.3
rpoB 760400 c.594G>C synonymous_variant 0.34
rpoB 760407 p.Ser201Ala missense_variant 0.32
rpoB 760430 c.624T>C synonymous_variant 0.39
rpoB 760436 c.630C>G synonymous_variant 0.39
rpoB 760460 c.654G>C synonymous_variant 0.44
rpoB 760475 c.669A>G synonymous_variant 0.43
rpoB 760481 c.675G>C synonymous_variant 0.43
rpoB 760484 c.678A>G synonymous_variant 0.44
rpoB 760487 c.681G>C synonymous_variant 0.45
rpoB 760508 c.702G>C synonymous_variant 0.51
rpoB 760511 c.705G>C synonymous_variant 0.5
rpoB 760514 c.708C>G synonymous_variant 0.5
rpoB 760532 c.726T>C synonymous_variant 0.46
rpoB 760533 p.Val243Leu missense_variant 0.45
rpoB 760541 c.735G>C synonymous_variant 0.49
rpoB 760547 c.741G>C synonymous_variant 0.49
rpoB 760553 c.747C>G synonymous_variant 0.48
rpoB 760565 c.759A>C synonymous_variant 0.51
rpoB 760568 c.762G>C synonymous_variant 0.49
rpoB 760571 c.765G>C synonymous_variant 0.49
rpoB 760589 c.783C>G synonymous_variant 0.5
rpoB 760591 p.Val262Ala missense_variant 0.49
rpoB 760611 c.805_807delTTGinsCTC synonymous_variant 0.47
rpoB 760634 c.828T>C synonymous_variant 0.46
rpoB 760646 c.840C>G synonymous_variant 0.37
rpoB 760649 c.843G>C synonymous_variant 0.37
rpoB 760652 c.846C>G synonymous_variant 0.35
rpoB 760655 c.849A>G synonymous_variant 0.35
rpoB 760661 c.855A>G synonymous_variant 0.35
rpoB 760670 c.864G>C synonymous_variant 0.35
rpoB 760674 c.868T>C synonymous_variant 0.35
rpoB 760679 c.873A>G synonymous_variant 0.33
rpoB 760683 c.877T>C synonymous_variant 0.34
rpoB 760724 c.918T>C synonymous_variant 0.18
rpoB 760946 c.1140A>G synonymous_variant 0.15
rpoB 760953 p.Ile383Leu missense_variant 0.15
rpoB 760958 c.1152G>C synonymous_variant 0.15
rpoB 760961 c.1155C>G synonymous_variant 0.16
rpoB 760965 p.Met387Leu missense_variant 0.17
rpoB 760970 c.1164G>C synonymous_variant 0.17
rpoB 760973 c.1167G>C synonymous_variant 0.17
rpoB 760982 c.1176G>C synonymous_variant 0.18
rpoB 760985 c.1179G>C synonymous_variant 0.17
rpoB 760988 c.1182C>G synonymous_variant 0.17
rpoB 760991 c.1185G>C synonymous_variant 0.19
rpoB 760997 c.1191G>C synonymous_variant 0.23
rpoB 761006 c.1200C>G synonymous_variant 0.31
rpoB 761015 c.1209G>C synonymous_variant 0.36
rpoB 761027 c.1221A>C synonymous_variant 0.38
rpoB 761036 c.1230G>C synonymous_variant 0.32
rpoB 761037 c.1231T>C synonymous_variant 0.34
rpoB 761051 c.1245G>C synonymous_variant 0.22
rpoB 761057 c.1251G>C synonymous_variant 0.23
rpoB 761058 p.Val418Ser missense_variant 0.23
rpoB 761063 c.1257C>G synonymous_variant 0.25
rpoB 761088 c.1282_1284delAGCinsTCG synonymous_variant 0.21
rpoB 761096 c.1290G>C synonymous_variant 0.23
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.23
rpoB 761102 c.1296A>G synonymous_variant 0.25
rpoB 761126 c.1320G>C synonymous_variant 0.24
rpoB 761132 c.1326G>C synonymous_variant 0.24
rpoB 761133 c.1327T>C synonymous_variant 0.25
rpoB 761147 c.1341C>T synonymous_variant 0.21
rpoB 761150 c.1344A>T synonymous_variant 0.24
rpoB 761165 c.1359G>C synonymous_variant 0.2
rpoB 761174 c.1368T>C synonymous_variant 0.22
rpoB 761180 c.1374A>G synonymous_variant 0.22
rpoB 761189 c.1383T>C synonymous_variant 0.24
rpoB 761192 c.1386C>G synonymous_variant 0.26
rpoB 761195 c.1389G>C synonymous_variant 0.24
rpoB 761198 c.1392G>C synonymous_variant 0.26
rpoB 761213 c.1407G>C synonymous_variant 0.3
rpoB 761234 c.1428G>C synonymous_variant 0.33
rpoB 761249 c.1443A>G synonymous_variant 0.37
rpoB 761261 c.1455G>C synonymous_variant 0.31
rpoB 761264 c.1458C>G synonymous_variant 0.31
rpoB 761273 c.1467T>C synonymous_variant 0.3
rpoB 761318 c.1512G>T synonymous_variant 0.18
rpoB 761327 c.1521A>G synonymous_variant 0.15
rpoB 761529 p.Val575Ile missense_variant 0.15
rpoB 761537 c.1731C>G synonymous_variant 0.22
rpoB 761549 c.1743G>C synonymous_variant 0.36
rpoB 761555 c.1749G>C synonymous_variant 0.38
rpoB 761558 c.1752C>G synonymous_variant 0.38
rpoB 761570 c.1764T>C synonymous_variant 0.45
rpoB 761573 c.1767C>G synonymous_variant 0.52
rpoB 761579 c.1773G>C synonymous_variant 0.52
rpoB 761612 c.1806G>C synonymous_variant 0.43
rpoB 761615 c.1809A>G synonymous_variant 0.47
rpoB 761627 c.1821C>T synonymous_variant 0.49
rpoB 761633 c.1827G>C synonymous_variant 0.45
rpoB 761649 c.1843_1844delAGinsTC synonymous_variant 0.35
rpoB 761655 p.Ala617Ser missense_variant 0.34
rpoB 761661 c.1855C>T synonymous_variant 0.35
rpoB 761666 c.1860G>C synonymous_variant 0.36
rpoB 761675 c.1869G>T synonymous_variant 0.35
rpoB 761690 c.1884G>C synonymous_variant 0.21
rpoB 761694 p.Ile630Val missense_variant 0.18
rpoB 761834 c.2028T>C synonymous_variant 0.19
rpoB 761840 c.2034C>G synonymous_variant 0.26
rpoB 761847 p.Cys681Arg missense_variant 0.26
rpoB 761858 c.2052G>C synonymous_variant 0.23
rpoB 761859 p.Asp685Asn missense_variant 0.23
rpoB 761868 p.Asp688Gln missense_variant 0.23
rpoB 761873 c.2067A>G synonymous_variant 0.25
rpoB 761885 c.2079T>A synonymous_variant 0.27
rpoB 761891 c.2085G>C synonymous_variant 0.26
rpoB 761892 p.Ile696Leu missense_variant 0.26
rpoB 761903 c.2097T>A synonymous_variant 0.24
rpoB 761909 c.2103T>C synonymous_variant 0.25
rpoB 761912 c.2106T>C synonymous_variant 0.25
rpoB 761916 p.Asp704Asn missense_variant 0.28
rpoB 761921 c.2115C>T synonymous_variant 0.3
rpoB 761933 c.2127G>C synonymous_variant 0.27
rpoB 761948 c.2142G>C synonymous_variant 0.38
rpoB 761954 c.2148C>G synonymous_variant 0.4
rpoB 761999 c.2193G>C synonymous_variant 0.35
rpoB 762002 c.2196C>G synonymous_variant 0.36
rpoB 762003 p.Asn733Gln missense_variant 0.36
rpoB 762014 c.2208C>G synonymous_variant 0.39
rpoB 762017 c.2211A>G synonymous_variant 0.39
rpoB 762026 c.2220G>C synonymous_variant 0.39
rpoB 762029 c.2223C>G synonymous_variant 0.38
rpoB 762032 c.2226C>G synonymous_variant 0.38
rpoB 762035 c.2229G>C synonymous_variant 0.38
rpoB 762053 c.2247T>C synonymous_variant 0.43
rpoB 762065 c.2259T>C synonymous_variant 0.45
rpoB 762074 c.2268C>G synonymous_variant 0.47
rpoB 762083 c.2277T>C synonymous_variant 0.5
rpoB 762086 c.2280G>C synonymous_variant 0.5
rpoB 762101 c.2295C>G synonymous_variant 0.51
rpoB 762114 p.Ile770Val missense_variant 0.47
rpoB 762131 c.2325C>G synonymous_variant 0.47
rpoB 762137 c.2331C>T synonymous_variant 0.48
rpoB 762140 c.2334G>C synonymous_variant 0.47
rpoB 762143 c.2337T>C synonymous_variant 0.46
rpoB 762149 c.2343G>C synonymous_variant 0.48
rpoB 762156 p.Val784Ile missense_variant 0.47
rpoB 762176 c.2370T>C synonymous_variant 0.52
rpoB 762185 c.2379G>C synonymous_variant 0.54
rpoB 762218 c.2412T>C synonymous_variant 0.46
rpoB 762233 c.2427G>C synonymous_variant 0.45
rpoB 762251 c.2445G>C synonymous_variant 0.4
rpoB 762254 c.2448T>C synonymous_variant 0.4
rpoB 762257 c.2451C>G synonymous_variant 0.36
rpoB 762275 c.2469C>G synonymous_variant 0.32
rpoB 762284 c.2478G>C synonymous_variant 0.31
rpoB 762293 c.2487T>G synonymous_variant 0.29
rpoB 762299 c.2493G>C synonymous_variant 0.27
rpoB 762308 c.2502G>C synonymous_variant 0.23
rpoB 762318 p.Ser838Thr missense_variant 0.16
rpoC 762767 c.-603G>C upstream_gene_variant 0.29
rpoC 762782 c.-588T>C upstream_gene_variant 0.27
rpoB 762789 p.Leu995Met missense_variant 0.26
rpoB 762795 p.Asp997Gln missense_variant 0.27
rpoC 762812 c.-558C>G upstream_gene_variant 0.21
rpoB 762814 p.Met1003Thr missense_variant 0.21
rpoC 762818 c.-552C>G upstream_gene_variant 0.21
rpoC 762827 c.-543G>C upstream_gene_variant 0.24
rpoC 762830 c.-540C>T upstream_gene_variant 0.24
rpoC 762831 c.-539_-537delAGCinsTCG upstream_gene_variant 0.24
rpoC 762836 c.-534C>T upstream_gene_variant 0.24
rpoC 762842 c.-528G>C upstream_gene_variant 0.24
rpoC 762857 c.-513C>G upstream_gene_variant 0.27
rpoB 762858 p.Thr1018Ala missense_variant 0.27
rpoB 762861 p.Val1019Ile missense_variant 0.27
rpoB 762879 p.Met1025Leu missense_variant 0.34
rpoB 762905 p.Asp1033Glu missense_variant 0.46
rpoC 762929 c.-441G>T upstream_gene_variant 0.4
rpoC 762947 c.-423C>G upstream_gene_variant 0.39
rpoC 762962 c.-408C>T upstream_gene_variant 0.56
rpoC 762989 c.-381G>T upstream_gene_variant 0.54
rpoC 762995 c.-375G>C upstream_gene_variant 0.56
rpoC 763013 c.-357C>G upstream_gene_variant 0.51
rpoC 763022 c.-348C>G upstream_gene_variant 0.55
rpoC 763028 c.-342T>C upstream_gene_variant 0.65
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 0.67
rpoC 763067 c.-303C>G upstream_gene_variant 0.55
rpoC 763070 c.-300T>C upstream_gene_variant 0.62
rpoB 763074 p.Thr1090Val missense_variant 0.62
rpoC 763088 c.-282C>G upstream_gene_variant 0.56
rpoC 763115 c.-255T>C upstream_gene_variant 0.5
rpoC 763127 c.-243G>C upstream_gene_variant 0.42
rpoC 763133 c.-237G>C upstream_gene_variant 0.44
rpoC 763160 c.-210G>C upstream_gene_variant 0.31
rpoC 763166 c.-204A>G upstream_gene_variant 0.24
rpoC 763169 c.-201A>G upstream_gene_variant 0.2
rpoC 763172 c.-198G>C upstream_gene_variant 0.17
rpoC 763486 c.117T>C synonymous_variant 0.38
rpoC 763492 c.123G>C synonymous_variant 0.37
rpoC 763528 c.159G>A synonymous_variant 0.37
rpoC 763546 c.177A>G synonymous_variant 0.44
rpoC 763558 c.189C>T synonymous_variant 0.52
rpoC 763570 c.201G>C synonymous_variant 0.53
rpoC 763573 c.204G>C synonymous_variant 0.54
rpoC 763615 c.246G>C synonymous_variant 0.54
rpoC 763618 c.249C>T synonymous_variant 0.53
rpoC 763636 c.267T>C synonymous_variant 0.52
rpoC 763660 c.291T>G synonymous_variant 0.51
rpoC 763666 c.297G>T synonymous_variant 0.51
rpoC 763696 c.327T>C synonymous_variant 0.49
rpoC 763699 c.330G>C synonymous_variant 0.48
rpoC 763702 c.333C>G synonymous_variant 0.48
rpoC 763708 c.339G>C synonymous_variant 0.48
rpoC 763714 c.345G>C synonymous_variant 0.48
rpoC 763717 c.348T>C synonymous_variant 0.5
rpoC 763732 c.363C>G synonymous_variant 0.52
rpoC 763735 c.366G>C synonymous_variant 0.49
rpoC 763741 c.372C>T synonymous_variant 0.41
rpoC 763744 c.375G>C synonymous_variant 0.42
rpoC 763765 c.396T>C synonymous_variant 0.37
rpoC 763780 c.411C>G synonymous_variant 0.27
rpoC 763781 p.Ser138Glu missense_variant 0.26
rpoC 763796 p.Met143Gln missense_variant 0.23
rpoC 763807 c.438T>C synonymous_variant 0.17
rpoC 763812 p.Leu148Gln missense_variant 0.15
rpoC 763884 p.Ala172Val missense_variant 1.0
rpoC 763886 c.517C>A synonymous_variant 1.0
rpoC 764227 c.858G>C synonymous_variant 0.17
rpoC 764239 c.870T>G synonymous_variant 0.25
rpoC 764245 c.876C>G synonymous_variant 0.27
rpoC 764254 c.885G>A synonymous_variant 0.31
rpoC 764257 c.888G>C synonymous_variant 0.34
rpoC 764263 c.894G>C synonymous_variant 0.32
rpoC 764266 c.897T>C synonymous_variant 0.35
rpoC 764278 c.909A>G synonymous_variant 0.39
rpoC 764297 p.Met310Leu missense_variant 0.41
rpoC 764308 c.939G>C synonymous_variant 0.44
rpoC 764317 c.948C>G synonymous_variant 0.45
rpoC 764320 c.951C>G synonymous_variant 0.43
rpoC 764353 c.984G>C synonymous_variant 0.49
rpoC 764365 c.996C>T synonymous_variant 0.5
rpoC 764371 c.1002G>C synonymous_variant 0.48
rpoC 764387 c.1018T>C synonymous_variant 0.48
rpoC 764404 c.1035C>T synonymous_variant 0.41
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.41
rpoC 764428 c.1059G>C synonymous_variant 0.47
rpoC 764431 c.1062G>C synonymous_variant 0.44
rpoC 764434 c.1065A>G synonymous_variant 0.44
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.44
rpoC 764446 c.1077T>C synonymous_variant 0.44
rpoC 764449 c.1080G>C synonymous_variant 0.44
rpoC 764452 c.1083T>C synonymous_variant 0.47
rpoC 764458 c.1089G>C synonymous_variant 0.49
rpoC 764461 c.1092A>G synonymous_variant 0.49
rpoC 764497 c.1128A>G synonymous_variant 0.58
rpoC 764503 c.1134G>C synonymous_variant 0.59
rpoC 764521 c.1152T>C synonymous_variant 0.56
rpoC 764536 c.1167G>T synonymous_variant 0.55
rpoC 764539 c.1170C>G synonymous_variant 0.56
rpoC 764548 c.1179G>A synonymous_variant 0.57
rpoC 764560 c.1191T>C synonymous_variant 0.58
rpoC 764575 c.1206T>G synonymous_variant 0.56
rpoC 764611 c.1242G>C synonymous_variant 0.57
rpoC 764632 c.1263T>C synonymous_variant 0.56
rpoC 764635 c.1266C>G synonymous_variant 0.56
rpoC 764650 c.1281G>T synonymous_variant 0.57
rpoC 764656 c.1287C>G synonymous_variant 0.57
rpoC 764662 c.1293G>C synonymous_variant 0.55
rpoC 764665 c.1296C>G synonymous_variant 0.56
rpoC 764668 c.1299C>T synonymous_variant 0.57
rpoC 764695 c.1326T>C synonymous_variant 0.59
rpoC 764701 c.1332C>G synonymous_variant 0.61
rpoC 764716 c.1347G>C synonymous_variant 0.63
rpoC 764746 c.1377G>C synonymous_variant 0.64
rpoC 764755 c.1386C>T synonymous_variant 0.63
rpoC 764764 c.1395T>C synonymous_variant 0.61
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.58
rpoC 764797 c.1428G>C synonymous_variant 0.56
rpoC 764803 c.1434C>G synonymous_variant 0.55
rpoC 764812 c.1443C>G synonymous_variant 0.51
rpoC 764815 c.1446A>G synonymous_variant 0.52
rpoC 764824 c.1455T>C synonymous_variant 0.51
rpoC 764827 c.1458G>C synonymous_variant 0.56
rpoC 764854 c.1485G>C synonymous_variant 0.51
rpoC 764858 c.1489T>C synonymous_variant 0.49
rpoC 764863 c.1494G>C synonymous_variant 0.48
rpoC 764869 c.1500C>T synonymous_variant 0.43
rpoC 764872 c.1503A>T synonymous_variant 0.42
rpoC 764878 c.1509C>G synonymous_variant 0.41
rpoC 764887 c.1518G>T synonymous_variant 0.37
rpoC 764888 c.1519T>C synonymous_variant 0.36
rpoC 764893 c.1524T>C synonymous_variant 0.33
rpoC 764902 c.1533C>G synonymous_variant 0.32
rpoC 764911 c.1542A>G synonymous_variant 0.28
rpoC 764912 p.Met515Gln missense_variant 0.27
rpoC 764917 c.1548G>C synonymous_variant 0.29
rpoC 764923 c.1554A>G synonymous_variant 0.3
rpoC 764935 c.1566T>C synonymous_variant 0.29
rpoC 764948 c.1579_1581delTTGinsCTC synonymous_variant 0.24
rpoC 764953 c.1584G>C synonymous_variant 0.24
rpoC 764968 c.1599T>C synonymous_variant 0.27
rpoC 765004 c.1635G>C synonymous_variant 0.23
rpoC 765007 c.1638T>G synonymous_variant 0.22
rpoC 765008 c.1639T>C synonymous_variant 0.23
rpoC 765011 c.1642_1643delAGinsTC synonymous_variant 0.22
rpoC 765016 c.1647C>G synonymous_variant 0.22
rpoC 765019 c.1650A>G synonymous_variant 0.22
rpoC 765034 c.1665T>C synonymous_variant 0.25
rpoC 765040 c.1671T>C synonymous_variant 0.25
rpoC 765041 c.1672T>C synonymous_variant 0.25
rpoC 765047 c.1678T>C synonymous_variant 0.24
rpoC 765055 c.1686C>G synonymous_variant 0.28
rpoC 765076 c.1707A>G synonymous_variant 0.24
rpoC 765079 c.1710T>G synonymous_variant 0.24
rpoC 765082 c.1713G>T synonymous_variant 0.24
rpoC 765085 c.1716T>C synonymous_variant 0.24
rpoC 765089 c.1720_1722delTTGinsCTC synonymous_variant 0.25
rpoC 765100 c.1731G>C synonymous_variant 0.25
rpoC 765103 c.1734G>T synonymous_variant 0.24
rpoC 765121 c.1752G>T synonymous_variant 0.15
rpoC 765171 p.Pro601Leu missense_variant 1.0
rpoC 765466 c.2097C>T synonymous_variant 0.22
rpoC 765478 c.2109T>C synonymous_variant 0.35
rpoC 765499 c.2130C>G synonymous_variant 0.35
rpoC 765544 c.2175C>G synonymous_variant 0.35
rpoC 765547 c.2178C>T synonymous_variant 0.34
rpoC 765548 c.2179_2181delAGCinsTCG synonymous_variant 0.34
rpoC 765562 c.2193G>C synonymous_variant 0.35
rpoC 765569 p.Ala734Ser missense_variant 0.36
rpoC 765580 c.2211G>C synonymous_variant 0.36
rpoC 765583 c.2214G>T synonymous_variant 0.36
rpoC 765590 p.Arg741Ser missense_variant 0.39
rpoC 765600 p.Glu744Gly missense_variant 0.37
rpoC 765610 c.2241C>T synonymous_variant 0.31
rpoC 765844 c.2475C>G synonymous_variant 0.17
rpoC 765875 p.Val836Ile missense_variant 0.39
rpoC 765886 c.2517C>G synonymous_variant 0.39
rpoC 765892 c.2523T>C synonymous_variant 0.4
rpoC 765904 c.2535C>G synonymous_variant 0.41
rpoC 765934 c.2565C>T synonymous_variant 0.49
rpoC 765940 c.2571A>T synonymous_variant 0.49
rpoC 765946 c.2577C>T synonymous_variant 0.45
rpoC 765947 c.2578T>C synonymous_variant 0.44
rpoC 765952 c.2583G>C synonymous_variant 0.42
rpoC 765955 c.2586C>T synonymous_variant 0.4
rpoC 765962 c.2593T>C synonymous_variant 0.38
rpoC 765979 c.2610C>G synonymous_variant 0.33
rpoC 765982 c.2613C>T synonymous_variant 0.33
rpoC 765994 c.2625A>T synonymous_variant 0.29
rpoC 766009 c.2640G>C synonymous_variant 0.16
rpoC 766012 c.2643C>G synonymous_variant 0.13
rpoC 766309 c.2940G>C synonymous_variant 0.16
rpoC 766312 c.2943T>C synonymous_variant 0.17
rpoC 766315 c.2946C>G synonymous_variant 0.17
rpoC 766321 c.2952C>G synonymous_variant 0.18
rpoC 766333 c.2964G>C synonymous_variant 0.18
rpoC 766345 c.2976T>C synonymous_variant 0.2
rpoC 766348 c.2979A>G synonymous_variant 0.2
rpoC 766357 c.2988C>T synonymous_variant 0.2
rpoC 766363 c.2994G>C synonymous_variant 0.2
rpoC 766369 c.3000C>G synonymous_variant 0.2
rpoC 766375 c.3006C>G synonymous_variant 0.2
rpoC 766381 c.3012C>T synonymous_variant 0.21
rpoC 766384 c.3015A>G synonymous_variant 0.2
rpoC 766390 c.3021C>T synonymous_variant 0.22
rpoC 766408 c.3039C>T synonymous_variant 0.23
rpoC 766435 p.Glu1022Asp missense_variant 0.2
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 0.16
rpsL 781805 c.246G>C synonymous_variant 0.17
rpsL 781808 c.249C>T synonymous_variant 0.18
rpsL 781814 c.255C>T synonymous_variant 0.17
rpsL 781817 c.258G>T synonymous_variant 0.26
rpsL 781829 c.270G>C synonymous_variant 0.26
rpsL 781832 c.273T>G synonymous_variant 0.26
rpsL 781838 c.279G>T synonymous_variant 0.29
rpsL 781841 c.282C>T synonymous_variant 0.34
rpsL 781865 c.306G>C synonymous_variant 0.39
rpsL 781871 c.312G>C synonymous_variant 0.4
rpsL 781892 c.333A>G synonymous_variant 0.4
rpsL 781898 c.339A>G synonymous_variant 0.4
rpsL 781901 c.342C>G synonymous_variant 0.4
rpsL 781907 c.348T>C synonymous_variant 0.4
rpsL 781916 c.357T>G synonymous_variant 0.42
rplC 800612 c.-197A>G upstream_gene_variant 0.17
rplC 800618 c.-191T>G upstream_gene_variant 0.19
rplC 800633 c.-176T>C upstream_gene_variant 0.28
rplC 800645 c.-164C>T upstream_gene_variant 0.22
rplC 800648 c.-161A>G upstream_gene_variant 0.21
rplC 800654 c.-155T>C upstream_gene_variant 0.19
rplC 800672 c.-137G>C upstream_gene_variant 0.15
Rv1258c 1406294 c.1047C>T synonymous_variant 1.0
embR 1417019 p.Cys110Tyr missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.26
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.28
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.31
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.21
rrs 1471972 n.127T>C non_coding_transcript_exon_variant 0.2
rrs 1471980 n.135G>T non_coding_transcript_exon_variant 0.15
rrs 1471981 n.136C>T non_coding_transcript_exon_variant 0.36
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.15
rrs 1472017 n.172C>T non_coding_transcript_exon_variant 0.16
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.27
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.48
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.48
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.49
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.56
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.51
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.45
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.42
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.29
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.28
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.3
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 0.29
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.31
rrs 1472396 n.551A>T non_coding_transcript_exon_variant 0.33
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.35
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.35
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.37
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.33
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.37
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.34
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.35
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.35
rrs 1472451 n.606C>A non_coding_transcript_exon_variant 0.31
rrs 1472460 n.615T>C non_coding_transcript_exon_variant 0.29
rrs 1472461 n.616G>T non_coding_transcript_exon_variant 0.31
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.33
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.34
rrs 1472467 n.622G>C non_coding_transcript_exon_variant 0.31
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.35
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.42
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.49
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.71
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.15
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.15
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.73
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.73
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.17
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.17
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.15
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.24
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.2
rrs 1472839 n.994C>G non_coding_transcript_exon_variant 0.21
rrs 1472844 n.998_999insT non_coding_transcript_exon_variant 0.24
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.14
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.14
rrs 1472857 n.1012A>T non_coding_transcript_exon_variant 0.26
rrs 1472858 n.1013G>C non_coding_transcript_exon_variant 0.24
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.26
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 0.24
rrs 1472864 n.1019C>G non_coding_transcript_exon_variant 0.24
rrs 1472872 n.1027G>C non_coding_transcript_exon_variant 0.27
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 0.34
rrs 1472876 n.1031G>C non_coding_transcript_exon_variant 0.23
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.22
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.22
rrs 1473081 n.1236C>G non_coding_transcript_exon_variant 0.65
rrs 1473082 n.1237G>C non_coding_transcript_exon_variant 0.62
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.68
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.67
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.65
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.65
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.67
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.67
rrs 1473129 n.1284C>G non_coding_transcript_exon_variant 0.62
rrs 1473130 n.1285G>C non_coding_transcript_exon_variant 0.65
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.67
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.69
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.13
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.7
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.65
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 0.3
rrl 1473695 n.38A>G non_coding_transcript_exon_variant 0.3
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.3
rrl 1473697 n.40C>A non_coding_transcript_exon_variant 0.31
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.31
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.31
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.48
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.48
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.48
rrl 1473793 n.136G>C non_coding_transcript_exon_variant 0.51
rrl 1473797 n.140G>C non_coding_transcript_exon_variant 0.51
rrl 1473802 n.145C>G non_coding_transcript_exon_variant 0.48
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.41
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.39
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.37
rrl 1473816 n.159C>T non_coding_transcript_exon_variant 0.37
rrl 1473844 n.187C>A non_coding_transcript_exon_variant 0.48
rrl 1473870 n.213G>T non_coding_transcript_exon_variant 0.35
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.36
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.33
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.29
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.28
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.28
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.19
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.19
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.2
rrl 1473933 n.276_277insAT non_coding_transcript_exon_variant 0.16
rrl 1473936 n.281_282delGC non_coding_transcript_exon_variant 0.16
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.16
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.16
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.16
rrl 1473968 n.311C>T non_coding_transcript_exon_variant 0.13
rrl 1473971 n.314G>T non_coding_transcript_exon_variant 0.12
rrl 1474127 n.470G>A non_coding_transcript_exon_variant 0.18
rrl 1474139 n.482C>T non_coding_transcript_exon_variant 0.22
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.27
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.32
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.3
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.13
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.2
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.18
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.14
rrl 1474255 n.598C>T non_coding_transcript_exon_variant 0.14
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.15
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.15
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.33
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.24
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.33
rrl 1474498 n.841G>A non_coding_transcript_exon_variant 0.19
rrl 1474505 n.848C>T non_coding_transcript_exon_variant 0.19
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.34
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.34
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.34
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.44
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.13
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.4
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.4
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.39
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.39
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.39
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.39
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.4
rrl 1474674 n.1017A>C non_coding_transcript_exon_variant 0.45
rrl 1474675 n.1018C>A non_coding_transcript_exon_variant 0.45
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.45
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1052G>T non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.53
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.45
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.49
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.56
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.62
rrl 1474798 n.1141C>T non_coding_transcript_exon_variant 0.24
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.64
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.65
rrl 1474822 n.1165G>C non_coding_transcript_exon_variant 0.33
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.34
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.67
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.34
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.66
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.32
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.37
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.49
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.18
rrl 1474905 n.1248T>G non_coding_transcript_exon_variant 0.18
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.48
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 0.27
rrl 1474928 n.1271C>G non_coding_transcript_exon_variant 0.18
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.31
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.19
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.34
rrl 1475063 n.1406A>T non_coding_transcript_exon_variant 0.32
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.31
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.29
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.3
rrl 1475084 n.1427G>T non_coding_transcript_exon_variant 0.29
rrl 1475088 n.1431A>G non_coding_transcript_exon_variant 0.3
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.3
rrl 1475109 n.1452C>T non_coding_transcript_exon_variant 0.28
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.27
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.29
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.3
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.29
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.15
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.15
rrl 1475479 n.1822C>A non_coding_transcript_exon_variant 0.16
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.16
rrl 1475482 n.1825A>T non_coding_transcript_exon_variant 0.16
rrl 1475483 n.1826C>G non_coding_transcript_exon_variant 0.16
rrl 1475485 n.1828C>T non_coding_transcript_exon_variant 0.18
rrl 1475486 n.1829A>G non_coding_transcript_exon_variant 0.19
rrl 1475487 n.1830C>T non_coding_transcript_exon_variant 0.18
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.19
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.19
rrl 1475536 n.1879C>A non_coding_transcript_exon_variant 0.22
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.19
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.14
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.18
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.17
rrl 1475601 n.1945_1950delGGAATA non_coding_transcript_exon_variant 0.27
rrl 1475609 n.1954_1955insCTGGT non_coding_transcript_exon_variant 0.23
rrl 1475614 n.1957A>T non_coding_transcript_exon_variant 0.22
rrl 1475615 n.1958C>G non_coding_transcript_exon_variant 0.22
rrl 1475617 n.1960C>T non_coding_transcript_exon_variant 0.22
rrl 1475619 n.1962C>T non_coding_transcript_exon_variant 0.21
rrl 1475622 n.1965G>A non_coding_transcript_exon_variant 0.21
rrl 1475627 n.1970G>C non_coding_transcript_exon_variant 0.2
rrl 1475633 n.1976G>T non_coding_transcript_exon_variant 0.2
rrl 1475636 n.1979A>G non_coding_transcript_exon_variant 0.2
rrl 1475638 n.1981C>G non_coding_transcript_exon_variant 0.2
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 0.2
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.24
rrl 1475655 n.1998T>A non_coding_transcript_exon_variant 0.24
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.28
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 0.33
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.35
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.39
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.46
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.5
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.56
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.63
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.63
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.63
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.18
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.18
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.6
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.48
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.47
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.47
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.2
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.46
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.32
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.3
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.3
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.2
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.29
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.3
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.2
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.3
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.2
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.3
rrl 1476060 n.2403T>G non_coding_transcript_exon_variant 0.17
rrl 1476085 n.2428G>A non_coding_transcript_exon_variant 0.18
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.13
rrl 1476091 n.2434_2435insC non_coding_transcript_exon_variant 0.31
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.3
rrl 1476100 n.2443A>C non_coding_transcript_exon_variant 0.16
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.3
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.3
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.3
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.15
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.2
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.44
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.3
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.44
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.43
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.42
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.4
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.48
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.41
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.53
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.58
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.57
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.57
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.58
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.56
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.61
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.62
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.58
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.64
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.75
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.57
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.56
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.58
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.58
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.48
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.49
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.47
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.43
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.39
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.33
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.3
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.29
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.29
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.26
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.26
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.26
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.17
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.13
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.14
rpsA 1833829 c.288A>G synonymous_variant 0.23
rpsA 1833832 c.291G>A synonymous_variant 0.23
rpsA 1833838 c.297G>C synonymous_variant 0.22
rpsA 1833841 c.300C>G synonymous_variant 0.23
rpsA 1833847 c.306C>G synonymous_variant 0.35
rpsA 1833856 c.315A>G synonymous_variant 0.41
rpsA 1833859 c.318C>T synonymous_variant 0.41
rpsA 1833874 c.333T>C synonymous_variant 0.54
rpsA 1833886 c.345C>G synonymous_variant 0.54
rpsA 1833894 p.Ala118Glu missense_variant 0.55
rpsA 1833928 c.387G>C synonymous_variant 0.61
rpsA 1833940 c.399C>G synonymous_variant 0.61
rpsA 1833952 c.411C>T synonymous_variant 0.63
rpsA 1833955 c.414G>C synonymous_variant 0.63
rpsA 1833961 c.420C>G synonymous_variant 0.6
rpsA 1833970 c.429G>C synonymous_variant 0.57
rpsA 1833973 c.432G>C synonymous_variant 0.57
rpsA 1833979 c.438T>C synonymous_variant 0.56
rpsA 1833985 c.444G>C synonymous_variant 0.6
rpsA 1833988 c.447C>G synonymous_variant 0.59
rpsA 1834000 c.459G>T synonymous_variant 0.58
rpsA 1834009 c.468C>T synonymous_variant 0.55
rpsA 1834012 c.471G>T synonymous_variant 0.55
rpsA 1834024 c.483G>C synonymous_variant 0.56
rpsA 1834030 c.489C>G synonymous_variant 0.51
rpsA 1834054 c.513C>G synonymous_variant 0.51
rpsA 1834069 c.528G>C synonymous_variant 0.45
rpsA 1834093 c.552G>C synonymous_variant 0.39
rpsA 1834099 c.558C>G synonymous_variant 0.36
rpsA 1834102 c.561T>C synonymous_variant 0.36
rpsA 1834105 c.564C>T synonymous_variant 0.35
rpsA 1834108 c.567C>A synonymous_variant 0.37
rpsA 1834114 c.573G>C synonymous_variant 0.35
rpsA 1834135 c.594G>C synonymous_variant 0.13
rpsA 1834240 c.699T>C synonymous_variant 0.14
rpsA 1834243 c.702G>C synonymous_variant 0.14
rpsA 1834249 c.708T>C synonymous_variant 0.16
rpsA 1834255 c.714C>G synonymous_variant 0.22
rpsA 1834261 c.720A>G synonymous_variant 0.23
rpsA 1834264 c.723G>C synonymous_variant 0.23
rpsA 1834279 c.738C>T synonymous_variant 0.32
rpsA 1834298 p.Gln253Thr missense_variant 0.35
rpsA 1834303 c.762T>G synonymous_variant 0.34
rpsA 1834306 c.765T>C synonymous_variant 0.4
rpsA 1834319 p.Val260Ile missense_variant 0.61
rpsA 1834327 c.786G>C synonymous_variant 0.38
rpsA 1834340 p.Met267Leu missense_variant 0.38
rpsA 1834348 c.807T>C synonymous_variant 0.36
rpsA 1834354 c.813G>C synonymous_variant 0.34
rpsA 1834357 c.816T>C synonymous_variant 0.36
rpsA 1834361 c.820T>C synonymous_variant 0.37
rpsA 1834366 c.825A>G synonymous_variant 0.37
rpsA 1834378 c.837T>C synonymous_variant 0.41
rpsA 1834384 c.843A>G synonymous_variant 0.38
rpsA 1834387 c.846C>T synonymous_variant 0.41
rpsA 1834396 c.855G>T synonymous_variant 0.42
rpsA 1834399 p.His286Gln missense_variant 0.39
rpsA 1834408 c.867C>G synonymous_variant 0.4
rpsA 1834411 c.870T>C synonymous_variant 0.39
rpsA 1834417 c.876G>C synonymous_variant 0.39
rpsA 1834423 c.882G>C synonymous_variant 0.4
rpsA 1834435 c.894G>C synonymous_variant 0.34
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.4
rpsA 1834456 c.915T>C synonymous_variant 0.36
rpsA 1834465 c.924T>C synonymous_variant 0.38
rpsA 1834468 c.927A>G synonymous_variant 0.38
rpsA 1834489 c.948T>C synonymous_variant 0.43
rpsA 1834501 c.960G>C synonymous_variant 0.4
rpsA 1834504 c.963G>C synonymous_variant 0.42
rpsA 1834513 c.972C>G synonymous_variant 0.42
rpsA 1834528 c.987T>C synonymous_variant 0.39
rpsA 1834540 c.999G>C synonymous_variant 0.38
rpsA 1834543 c.1002C>G synonymous_variant 0.38
rpsA 1834546 c.1005T>C synonymous_variant 0.38
rpsA 1834552 c.1011G>C synonymous_variant 0.35
rpsA 1834555 c.1014T>C synonymous_variant 0.35
rpsA 1834556 p.Ala339Ser missense_variant 0.35
rpsA 1834570 c.1029C>T synonymous_variant 0.34
rpsA 1834600 c.1059G>C synonymous_variant 0.33
rpsA 1834606 c.1065C>T synonymous_variant 0.33
rpsA 1834612 c.1071G>T synonymous_variant 0.32
rpsA 1834619 c.1078T>C synonymous_variant 0.28
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.28
rpsA 1834633 c.1092A>G synonymous_variant 0.29
rpsA 1834639 c.1098T>C synonymous_variant 0.27
rpsA 1834667 p.Ala376Ser missense_variant 0.28
rpsA 1834690 c.1149T>C synonymous_variant 0.28
rpsA 1834700 p.Gln387Asn missense_variant 0.3
rpsA 1834706 p.Asn389Glu missense_variant 0.31
rpsA 1834733 p.Ala398Pro missense_variant 0.45
rpsA 1834738 c.1197A>G synonymous_variant 0.43
rpsA 1834747 c.1206A>G synonymous_variant 0.29
rpsA 1834753 c.1212T>C synonymous_variant 0.41
rpsA 1834759 c.1218A>C synonymous_variant 0.33
rpsA 1834765 c.1224A>G synonymous_variant 0.28
rpsA 1834774 c.1233C>T synonymous_variant 0.25
rpsA 1834776 p.Ala412Glu missense_variant 0.25
rpsA 1834780 c.1239A>G synonymous_variant 0.36
rpsA 1834786 c.1245A>G synonymous_variant 0.25
rpsA 1834789 c.1248T>C synonymous_variant 0.27
rpsA 1834792 c.1251G>C synonymous_variant 0.27
rpsA 1834810 c.1269C>T synonymous_variant 0.4
rpsA 1834813 c.1272G>T synonymous_variant 0.4
rpsA 1834849 c.1308C>G synonymous_variant 0.14
rpsA 1834854 p.Ala438Asp missense_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155677 c.435C>G synonymous_variant 0.19
katG 2155680 c.432G>C synonymous_variant 0.19
katG 2155689 c.421_423delTTGinsCTC synonymous_variant 0.2
katG 2155696 p.Ala139Val missense_variant 0.21
katG 2155716 c.396T>C synonymous_variant 0.2
katG 2155722 c.390G>C synonymous_variant 0.21
katG 2155728 c.384G>T synonymous_variant 0.21
katG 2155736 p.Met126Leu missense_variant 0.2
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2167983 p.Gly877Asp missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517921 c.-194_-193delACinsCT upstream_gene_variant 0.17
kasA 2517945 c.-170_-168delATCinsGTG upstream_gene_variant 0.16
kasA 2517950 c.-165C>G upstream_gene_variant 0.16
kasA 2518132 c.18C>T synonymous_variant 1.0
eis 2715028 p.Ala102Val missense_variant 1.0
ahpC 2726051 c.-142G>A upstream_gene_variant 1.0
Rv2752c 3064632 c.1560C>T synonymous_variant 1.0
Rv2752c 3065605 p.Val196Ala missense_variant 1.0
thyA 3073839 c.633T>C synonymous_variant 0.17
thyA 3073863 c.609T>C synonymous_variant 0.21
thyA 3073878 p.Glu198Asp missense_variant 0.17
thyA 3073885 p.Val196Pro missense_variant 0.17
thyA 3073888 p.Ser195Glu missense_variant 0.17
thyA 3073890 c.580_582delTTGinsCTC synonymous_variant 0.2
thyA 3073896 p.Ala192Val missense_variant 0.19
thyA 3073902 c.570C>G synonymous_variant 0.19
thyA 3073908 p.Met188Val missense_variant 0.19
thyA 3073917 c.555C>G synonymous_variant 0.19
thyA 3073925 c.547T>C synonymous_variant 0.2
thyA 3073929 c.543T>C synonymous_variant 0.25
thyA 3073950 c.522G>C synonymous_variant 0.25
thyA 3073953 c.519T>C synonymous_variant 0.24
thyA 3073959 c.513T>C synonymous_variant 0.24
thyA 3073965 c.507C>T synonymous_variant 0.25
thyA 3073977 c.495A>G synonymous_variant 0.18
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448550 p.Gly16Asp missense_variant 0.12
Rv3083 3448714 p.Asp71His missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474597 c.591C>A synonymous_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3877587 p.Ser307Ala missense_variant 0.15
rpoA 3877593 c.915C>T synonymous_variant 0.16
rpoA 3877600 p.Gln303Ala missense_variant 0.2
rpoA 3877613 p.Ile299Val missense_variant 0.2
rpoA 3877617 c.891G>C synonymous_variant 0.22
rpoA 3877629 c.879C>G synonymous_variant 0.22
rpoA 3877656 c.852T>C synonymous_variant 0.3
rpoA 3877659 c.849G>T synonymous_variant 0.32
rpoA 3877668 c.840A>G synonymous_variant 0.39
rpoA 3877677 c.831G>C synonymous_variant 0.36
rpoA 3877683 c.825G>C synonymous_variant 0.35
rpoA 3877686 c.822A>G synonymous_variant 0.36
rpoA 3877698 c.810C>T synonymous_variant 0.38
rpoA 3877704 c.804G>T synonymous_variant 0.35
rpoA 3877728 c.780C>G synonymous_variant 0.36
rpoA 3877731 c.777G>T synonymous_variant 0.36
rpoA 3877743 c.765T>C synonymous_variant 0.42
rpoA 3877746 c.762G>C synonymous_variant 0.41
rpoA 3877752 p.Asp252Glu missense_variant 0.44
rpoA 3877764 p.Ala248Ser missense_variant 0.45
rpoA 3877770 p.Ser246Ala missense_variant 0.44
rpoA 3877776 c.732T>C synonymous_variant 0.46
rpoA 3877782 c.726T>C synonymous_variant 0.43
rpoA 3877818 c.690A>G synonymous_variant 0.4
rpoA 3877836 c.672A>G synonymous_variant 0.43
rpoA 3877839 c.669G>C synonymous_variant 0.43
rpoA 3877842 c.666A>G synonymous_variant 0.44
rpoA 3877856 c.652T>C synonymous_variant 0.44
rpoA 3877866 c.642G>C synonymous_variant 0.46
rpoA 3877875 c.633T>C synonymous_variant 0.45
rpoA 3877881 c.627G>T synonymous_variant 0.48
rpoA 3877893 c.615C>G synonymous_variant 0.44
rpoA 3877898 p.Pro204Ala missense_variant 0.44
rpoA 3877900 p.Ser203Thr missense_variant 0.44
rpoA 3877902 p.Ile202Met missense_variant 0.44
rpoA 3877905 c.603A>G synonymous_variant 0.43
rpoA 3877908 c.600T>C synonymous_variant 0.42
rpoA 3877920 c.588G>C synonymous_variant 0.44
rpoA 3877935 p.Lys191Arg missense_variant 0.39
rpoA 3877938 c.570C>T synonymous_variant 0.4
rpoA 3877962 c.546G>T synonymous_variant 0.44
rpoA 3877971 p.Asp179Glu missense_variant 0.34
rpoA 3877989 c.519A>G synonymous_variant 0.33
rpoA 3877998 c.510G>C synonymous_variant 0.29
rpoA 3878001 c.507A>G synonymous_variant 0.27
rpoA 3878010 c.498C>G synonymous_variant 0.23
rpoA 3878013 c.495T>C synonymous_variant 0.21
rpoA 3878019 c.489A>G synonymous_variant 0.17
rpoA 3878025 c.483C>T synonymous_variant 0.18
rpoA 3878028 c.480G>C synonymous_variant 0.18
rpoA 3878031 c.477T>C synonymous_variant 0.19
rpoA 3878034 c.474A>G synonymous_variant 0.19
rpoA 3878040 c.468T>C synonymous_variant 0.19
rpoA 3878046 c.462T>G synonymous_variant 0.18
rpoA 3878050 p.Arg153Lys missense_variant 0.18
rpoA 3878055 c.453A>G synonymous_variant 0.18
rpoA 3878061 c.447G>C synonymous_variant 0.19
rpoA 3878067 c.441C>G synonymous_variant 0.19
rpoA 3878070 c.438T>C synonymous_variant 0.19
rpoA 3878082 c.426T>G synonymous_variant 0.23
rpoA 3878102 p.Val136Ile missense_variant 0.18
rpoA 3878103 c.405A>G synonymous_variant 0.18
rpoA 3878106 c.402G>C synonymous_variant 0.18
rpoA 3878118 c.390T>C synonymous_variant 0.19
rpoA 3878127 c.381G>C synonymous_variant 0.2
rpoA 3878141 p.Met123Leu missense_variant 0.21
rpoA 3878142 p.Gly122Asp missense_variant 0.21
rpoA 3878161 c.345_346delCG frameshift_variant 0.36
rpoA 3878166 c.341_342insGT frameshift_variant 0.36
rpoA 3878172 c.336G>C synonymous_variant 0.35
rpoA 3878175 c.333G>T synonymous_variant 0.35
rpoA 3878187 c.321C>G synonymous_variant 0.33
rpoA 3878193 c.315T>C synonymous_variant 0.32
rpoA 3878196 p.Glu104Ala missense_variant 0.31
rpoA 3878199 c.309T>C synonymous_variant 0.32
rpoA 3878205 c.303T>C synonymous_variant 0.35
rpoA 3878217 p.Leu97Val missense_variant 0.35
rpoA 3878241 p.Glu89Asp missense_variant 0.4
rpoA 3878250 c.258C>G synonymous_variant 0.36
rpoA 3878253 c.255G>C synonymous_variant 0.36
rpoA 3878256 c.252G>C synonymous_variant 0.35
rpoA 3878264 p.Ser82Gly missense_variant 0.35
rpoA 3878271 c.237T>C synonymous_variant 0.33
rpoA 3878283 p.Glu75Asp missense_variant 0.29
rpoA 3878295 c.213A>G synonymous_variant 0.21
rpoA 3878298 c.210A>G synonymous_variant 0.2
rpoA 3878301 c.207C>G synonymous_variant 0.21
rpoA 3878304 c.204G>C synonymous_variant 0.21
rpoA 3878310 c.198G>C synonymous_variant 0.22
rpoA 3878322 c.186A>G synonymous_variant 0.22
rpoA 3878331 c.177A>G synonymous_variant 0.22
rpoA 3878337 c.171T>C synonymous_variant 0.22
rpoA 3878346 c.162T>C synonymous_variant 0.25
rpoA 3878355 c.153C>G synonymous_variant 0.16
rpoA 3878364 c.144A>C synonymous_variant 0.15
ddn 3986745 c.-99A>C upstream_gene_variant 1.0
clpC1 4038725 c.1980C>G synonymous_variant 0.19
clpC1 4038740 c.1965G>C synonymous_variant 0.29
clpC1 4038743 c.1962G>C synonymous_variant 0.29
clpC1 4038755 c.1950G>C synonymous_variant 0.46
clpC1 4038764 c.1941C>G synonymous_variant 0.45
clpC1 4038767 c.1938G>C synonymous_variant 0.45
clpC1 4038770 c.1935C>T synonymous_variant 0.45
clpC1 4038773 c.1932T>C synonymous_variant 0.46
clpC1 4038794 p.Ser637Thr missense_variant 0.43
clpC1 4038808 c.1896_1897insC frameshift_variant 0.4
clpC1 4038811 c.1893delT frameshift_variant 0.41
clpC1 4038860 c.1845G>T synonymous_variant 0.52
clpC1 4038878 c.1827A>G synonymous_variant 0.5
clpC1 4038896 c.1809C>G synonymous_variant 0.49
clpC1 4038905 c.1800A>G synonymous_variant 0.44
clpC1 4038911 c.1794G>T synonymous_variant 0.44
clpC1 4038914 c.1791G>C synonymous_variant 0.44
clpC1 4038917 c.1788C>T synonymous_variant 0.44
clpC1 4038923 c.1782A>G synonymous_variant 0.45
clpC1 4038926 c.1779G>C synonymous_variant 0.47
clpC1 4038932 c.1773G>C synonymous_variant 0.49
clpC1 4038941 c.1764G>C synonymous_variant 0.53
clpC1 4038953 c.1752A>G synonymous_variant 0.55
clpC1 4038956 c.1749T>C synonymous_variant 0.55
clpC1 4038965 c.1740T>C synonymous_variant 0.55
clpC1 4038971 c.1734T>C synonymous_variant 0.52
clpC1 4038974 c.1731T>C synonymous_variant 0.51
clpC1 4038986 p.Asp573Glu missense_variant 0.53
clpC1 4038989 c.1716T>C synonymous_variant 0.51
clpC1 4038997 c.1708T>C synonymous_variant 0.49
clpC1 4039004 c.1701C>G synonymous_variant 0.48
clpC1 4039016 c.1689C>G synonymous_variant 0.48
clpC1 4039022 c.1683A>G synonymous_variant 0.47
clpC1 4039085 c.1620A>G synonymous_variant 0.4
clpC1 4039091 c.1614G>C synonymous_variant 0.39
clpC1 4039097 c.1608G>T synonymous_variant 0.38
clpC1 4039100 c.1605C>G synonymous_variant 0.36
clpC1 4039106 c.1599G>C synonymous_variant 0.35
clpC1 4039112 c.1593C>G synonymous_variant 0.35
clpC1 4039118 c.1587C>G synonymous_variant 0.35
clpC1 4039121 c.1584T>C synonymous_variant 0.36
clpC1 4039124 c.1581C>G synonymous_variant 0.33
clpC1 4039142 c.1563A>G synonymous_variant 0.33
clpC1 4039145 c.1560G>C synonymous_variant 0.34
clpC1 4039169 p.Glu512Asp missense_variant 0.29
clpC1 4039172 c.1533A>G synonymous_variant 0.26
clpC1 4039178 c.1527G>C synonymous_variant 0.24
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.25
clpC1 4039187 c.1518G>T synonymous_variant 0.25
clpC1 4039199 p.Ala502Glu missense_variant 0.23
clpC1 4039244 c.1461G>C synonymous_variant 0.17
clpC1 4039499 c.1206G>C synonymous_variant 0.17
clpC1 4039517 c.1188C>G synonymous_variant 0.15
clpC1 4039526 c.1179G>C synonymous_variant 0.17
clpC1 4039541 c.1164C>G synonymous_variant 0.17
clpC1 4039547 c.1158C>G synonymous_variant 0.17
clpC1 4039556 c.1149G>C synonymous_variant 0.17
clpC1 4039565 c.1140G>C synonymous_variant 0.17
clpC1 4039570 p.Met379Leu missense_variant 0.17
clpC1 4039574 p.Ala377Ser missense_variant 0.17
clpC1 4039577 c.1128T>C synonymous_variant 0.16
clpC1 4039580 c.1125C>G synonymous_variant 0.16
clpC1 4039586 c.1119G>C synonymous_variant 0.16
clpC1 4039589 p.Val372Ile missense_variant 0.16
clpC1 4039592 c.1113G>C synonymous_variant 0.16
clpC1 4039616 c.1089G>C synonymous_variant 0.33
clpC1 4039642 p.Thr355Ala missense_variant 0.43
clpC1 4039649 c.1056G>C synonymous_variant 0.4
clpC1 4039652 p.Thr351Ser missense_variant 0.42
clpC1 4039661 c.1044T>C synonymous_variant 0.47
clpC1 4039670 c.1035G>C synonymous_variant 0.44
clpC1 4039673 c.1032G>C synonymous_variant 0.45
clpC1 4039694 c.1011G>C synonymous_variant 0.46
clpC1 4039724 c.981A>G synonymous_variant 0.58
clpC1 4039748 c.957G>C synonymous_variant 0.49
clpC1 4039751 c.954A>G synonymous_variant 0.49
clpC1 4039757 c.948A>G synonymous_variant 0.51
clpC1 4039766 c.939T>C synonymous_variant 0.5
clpC1 4039769 c.936C>G synonymous_variant 0.51
clpC1 4039778 c.927A>G synonymous_variant 0.53
clpC1 4039781 c.924G>C synonymous_variant 0.51
clpC1 4039817 c.888A>T synonymous_variant 0.43
clpC1 4039820 c.885T>G synonymous_variant 0.41
clpC1 4039823 c.882T>C synonymous_variant 0.41
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.42
clpC1 4039832 c.873C>G synonymous_variant 0.41
clpC1 4039850 c.855T>C synonymous_variant 0.47
clpC1 4039865 c.840T>C synonymous_variant 0.41
clpC1 4039876 p.Asn277Asp missense_variant 0.42
clpC1 4039895 p.Lys270Arg missense_variant 0.46
clpC1 4039898 c.807C>G synonymous_variant 0.44
clpC1 4039904 c.801A>G synonymous_variant 0.54
clpC1 4039925 c.780C>T synonymous_variant 0.4
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.39
clpC1 4039931 c.774T>C synonymous_variant 0.39
clpC1 4039934 c.771G>C synonymous_variant 0.42
clpC1 4039943 c.762G>C synonymous_variant 0.43
clpC1 4039946 c.759A>C synonymous_variant 0.43
clpC1 4039952 c.753T>C synonymous_variant 0.47
clpC1 4039964 c.741C>G synonymous_variant 0.48
clpC1 4039982 c.723G>C synonymous_variant 0.55
clpC1 4039988 c.717C>G synonymous_variant 0.52
clpC1 4039994 p.Glu237Asn missense_variant 0.53
clpC1 4040002 p.His235Asn missense_variant 0.55
clpC1 4040003 c.702G>C synonymous_variant 0.58
clpC1 4040021 c.684A>C synonymous_variant 0.59
clpC1 4040024 c.681A>G synonymous_variant 0.6
clpC1 4040030 c.675C>G synonymous_variant 0.61
clpC1 4040033 c.672G>C synonymous_variant 0.59
clpC1 4040045 c.660C>G synonymous_variant 0.56
clpC1 4040090 c.615T>G synonymous_variant 0.45
clpC1 4040107 p.Val200Ile missense_variant 0.36
clpC1 4040108 c.597G>C synonymous_variant 0.37
clpC1 4040117 c.588A>G synonymous_variant 0.4
clpC1 4040123 p.Glu194Ser missense_variant 0.24
clpC1 4040126 c.579C>G synonymous_variant 0.2
clpC1 4040147 c.558A>G synonymous_variant 0.19
clpC1 4040387 c.318A>G synonymous_variant 0.22
clpC1 4040393 c.312G>T synonymous_variant 0.32
clpC1 4040411 c.294T>G synonymous_variant 0.28
clpC1 4040423 c.282A>G synonymous_variant 0.3
clpC1 4040426 c.279T>C synonymous_variant 0.28
clpC1 4040450 c.255A>G synonymous_variant 0.29
clpC1 4040456 c.249C>T synonymous_variant 0.3
clpC1 4040459 c.246C>G synonymous_variant 0.3
clpC1 4040462 c.243C>G synonymous_variant 0.29
clpC1 4040465 c.240T>C synonymous_variant 0.28
clpC1 4040468 c.237G>C synonymous_variant 0.29
clpC1 4040471 c.234T>C synonymous_variant 0.3
clpC1 4040477 c.228G>C synonymous_variant 0.31
clpC1 4040480 c.225T>G synonymous_variant 0.33
clpC1 4040486 c.219G>C synonymous_variant 0.36
clpC1 4040501 c.204C>G synonymous_variant 0.41
clpC1 4040517 p.Val63Ala missense_variant 0.58
clpC1 4040522 c.183T>C synonymous_variant 0.39
clpC1 4040531 c.174T>A synonymous_variant 0.38
clpC1 4040534 c.171A>G synonymous_variant 0.38
clpC1 4040540 c.165G>C synonymous_variant 0.36
clpC1 4040546 c.159G>C synonymous_variant 0.27
clpC1 4040551 c.154T>C synonymous_variant 0.25
clpC1 4040558 c.147G>C synonymous_variant 0.24
clpC1 4040561 p.Ser48Ala missense_variant 0.24
clpC1 4040570 c.135C>G synonymous_variant 0.24
clpC1 4040573 c.132T>G synonymous_variant 0.25
clpC1 4040576 c.129C>T synonymous_variant 0.25
clpC1 4040579 c.126A>G synonymous_variant 0.25
clpC1 4040582 c.123G>T synonymous_variant 0.23
clpC1 4040585 c.120A>G synonymous_variant 0.23
clpC1 4040588 c.117T>C synonymous_variant 0.23
clpC1 4040600 c.103_105delTTAinsCTG synonymous_variant 0.23
clpC1 4040603 c.102T>C synonymous_variant 0.23
clpC1 4040606 c.99T>C synonymous_variant 0.23
clpC1 4040633 c.72C>T synonymous_variant 0.17
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241042 p.Asn394Asp missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243848 p.Val206Met missense_variant 1.0
embA 4244096 c.864C>T synonymous_variant 1.0
embA 4245969 p.Pro913Ser missense_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338242 p.Gln94Glu missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338603 c.-82C>T upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407873 c.330G>T synonymous_variant 1.0