Rv0668 - c.1533C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
15 Sensitive
8 RR-TB
12 HR-TB
10 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
24 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.1.1 | 1 |
| La1.8.1 | 2 |
| lineage4.9 | 18 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| lineage2.2.1 | 12 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| 2 | |
| lineage1.1.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.1.2.1 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.2 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage2.2.2;lineage4 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.6.3 | 1 |
| lineage4.6.2.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage4.3.2.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 73 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR7236330 | Other | La1.8.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | SRR1106670 | Sensitive | lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675446 | RR-TB | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR2027233 | Sensitive | lineage4.1.2.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | SRR1062865 | Sensitive | lineage2.2.2 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR1013528 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4769457 | Other | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR1141261 | Sensitive | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR2446413 | Sensitive | lineage4.6.3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR4816322 | Other | lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR4798823 | HR-TB | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR1063855 | Other | lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None |
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