Run ID: SRR1106670
Sample name:
Date: 02-04-2023 20:44:01
Number of reads: 59390
Percentage reads mapped: 1.21
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7581 | p.Asp94Tyr | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
ethA | 4326333 | p.Ala381Pro | missense_variant | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
rpoB | 762878 | p.Ile1024Met | missense_variant | 1.0 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 1.0 |
rpoC | 762894 | c.-476C>T | upstream_gene_variant | 0.89 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.89 |
rpoB | 762911 | p.Ile1035Met | missense_variant | 0.91 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 0.96 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.96 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.96 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.95 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 0.96 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 0.96 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 0.91 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.91 |
rpoC | 762989 | c.-381G>T | upstream_gene_variant | 0.89 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 1.0 |
rpoC | 762998 | c.-372G>A | upstream_gene_variant | 1.0 |
rpoC | 764623 | c.1254C>G | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 1.0 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 1.0 |
rpoC | 764665 | c.1296C>G | synonymous_variant | 1.0 |
rpoC | 764672 | p.Gln435Thr | missense_variant | 1.0 |
rpoC | 764686 | c.1317C>T | synonymous_variant | 1.0 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 1.0 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 1.0 |
rpoC | 764719 | c.1350G>A | synonymous_variant | 1.0 |
rpoC | 764722 | c.1353G>C | synonymous_variant | 1.0 |
rpoC | 764858 | p.Leu497Met | missense_variant | 1.0 |
rpoC | 764875 | c.1506C>G | synonymous_variant | 1.0 |
rpoC | 764878 | c.1509C>G | synonymous_variant | 1.0 |
rpoC | 764887 | c.1518G>T | synonymous_variant | 1.0 |
rpoC | 764888 | c.1519_1521delTTGinsCTC | synonymous_variant | 1.0 |
rpoC | 764902 | c.1533C>G | synonymous_variant | 1.0 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.92 |
rpoC | 764912 | p.Met515Val | missense_variant | 1.0 |
rpoC | 764918 | p.Val517Ile | missense_variant | 1.0 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 1.0 |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.89 |
rpoC | 764953 | c.1584G>C | synonymous_variant | 0.89 |
rpoC | 764956 | c.1587T>C | synonymous_variant | 0.89 |
rpoC | 764958 | p.Glu530Ala | missense_variant | 0.89 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.89 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472223 | n.378C>G | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472228 | n.383G>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472251 | n.406G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472252 | n.407G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472256 | n.411T>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472278 | n.433C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472279 | n.434T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472380 | n.535G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472390 | n.545T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472391 | n.546C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472707 | n.862A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472709 | n.864T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472715 | n.870C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472716 | n.871C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472785 | n.940G>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472786 | n.941C>G | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472814 | n.969G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472972 | n.1127T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472974 | n.1130_1133delTGGT | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472993 | n.1148G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473038 | n.1193A>C | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473139 | n.1294T>C | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473172 | n.1327T>C | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474770 | n.1113G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474800 | n.1143T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475787 | n.2130C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475791 | n.2134A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476483 | n.2826G>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476501 | n.2844C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
thyA | 3073953 | c.519T>C | synonymous_variant | 1.0 |
thyA | 3073956 | c.516G>C | synonymous_variant | 1.0 |
thyA | 3073959 | c.513T>C | synonymous_variant | 1.0 |
thyA | 3073962 | p.Leu170Ile | missense_variant | 1.0 |
thyA | 3073977 | c.495A>G | synonymous_variant | 1.0 |
thyA | 3073989 | c.483T>C | synonymous_variant | 1.0 |
thyA | 3073992 | c.478_480delAGCinsTCG | synonymous_variant | 1.0 |
thyA | 3073999 | p.Arg158Lys | missense_variant | 1.0 |
thyA | 3074004 | c.468T>C | synonymous_variant | 1.0 |
thyA | 3074010 | c.462C>G | synonymous_variant | 1.0 |
thyA | 3074031 | c.441T>C | synonymous_variant | 1.0 |
thyA | 3074034 | c.438T>C | synonymous_variant | 1.0 |