Rv0668 - c.-399G>C
Drug resistance types
43 Sensitive
57 RR-TB
18 HR-TB
27 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
90 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.4 | 1 |
| lineage2.2.1 | 26 |
| lineage4.9 | 83 |
| 8 | |
| lineage4.4 | 1 |
| lineage2.2.2 | 5 |
| lineage4.8 | 23 |
| lineage3 | 16 |
| lineage4.1.1.3 | 4 |
| lineage1.2.1.2 | 1 |
| lineage4 | 16 |
| lineage3.1.2 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.1.2.1 | 5 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1.2 | 4 |
| lineage4.5 | 1 |
| lineage4.4.1.1 | 5 |
| lineage4.1.1.3.1 | 3 |
| lineage4;lineage3 | 1 |
| lineage4.8.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage3.1.1 | 5 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1 | 2 |
| lineage4.2.1 | 3 |
| lineage1.2.2.2 | 1 |
| lineage4.3.1.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.3 | 4 |
| lineage4.7 | 2 |
| lineage4.4.2 | 1 |
| lineage4.8.1 | 1 |
| La1.2 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.3.4 | 1 |
| lineage6.2.3;lineage1.1.2 | 1 |
| La1.3 | 1 |
| lineage4.9;La1.3 | 2 |
| lineage3.1.3 | 1 |
| lineage4.3 | 1 |
| lineage2.2 | 3 |
| lineage2.2.1.1 | 1 |
| lineage4.9;lineage2.2.1 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2 | 1 |
| La2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 252 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16278274 | Other | La1.4 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR20632814 | Sensitive | lineage4 | None | SRR22424765 | MDR-TB | lineage4 | None | ERR4814690 | Sensitive | lineage2.2.1 | None | ERR4815310 | Other | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4814976 | Other | lineage4.9 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4815550 | Other | lineage4 | None | SRR3675509 | Other | lineage4.9 | None | ERR4815079 | RR-TB | lineage3 | None | ERR2228965 | Other | lineage4.8 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2229198 | MDR-TB | lineage4.8 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR2229147 | Other | lineage4.8 | None | ERR4816470 | Other | lineage3 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816688 | Other | lineage4.2.2.2 | gb | ERR2228838 | RR-TB | lineage4.8 | None | ERR2228810 | RR-TB | lineage4 | None | ERR4816756 | RR-TB | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR4817301 | Other | lineage4.9 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR4815816 | Other | lineage4.5 | gb | ERR2228900 | RR-TB | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | ERR2229810 | Other | lineage4.8 | None | ERR4819073 | Other | lineage4.1.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR4818039 | Sensitive | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR2513259 | Other | lineage3 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817584 | MDR-TB | lineage3 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4820324 | Other | lineage4 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR2513830 | RR-TB | lineage4.8 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | SAMN02598978 | HR-TB | lineage1.1.2 | None | ERR4821796 | Other | lineage4.1.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4820833 | HR-TB | None | ERR4819910 | Other | lineage4.9 | None | ERR4821214 | RR-TB | None | ERR4821811 | RR-TB | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR6045450 | Other | lineage4.9 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4822104 | RR-TB | lineage3 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044936 | Other | lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6045399 | Other | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046440 | Other | lineage3.1.2.2 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6397815 | Other | lineage4.4.1.1 | None | SRR6046815 | Other | lineage3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6896545 | Other | lineage4.9 | None | SRR6982246 | Sensitive | lineage4 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR323068 | Sensitive | lineage4.9 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR7851312 | Other | La1.2 | None | ERR019855 | Other | lineage3 | None | ERR017781 | Other | lineage3 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796634 | Other | lineage4 | None | ERR10796635 | Other | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283008 | Other | lineage4.9 | None | ERR10796627 | Other | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR3283043 | Other | lineage4.9 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3439265 | Other | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769472 | Other | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4796577 | MDR-TB | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9117788 | Other | lineage3 | None | ERR9117826 | Other | lineage3.1.3 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR1013527 | RR-TB | lineage2.2 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013530 | HR-TB | lineage4.9 | None | SRR1013528 | Pre-XDR-TB | lineage2.2 | None | SRR1013531 | MDR-TB | lineage4.9 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR1013610 | HR-TB | lineage4 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR1062864 | Sensitive | lineage4.9;lineage2.2.1 | None | SRR1062867 | RR-TB | lineage4.9;lineage2.2.1 | None | SRR1062868 | HR-TB | lineage4.9 | None | SRR1062865 | HR-TB | lineage2.2.2 | None | SRR1106670 | Other | lineage4.9 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1141261 | MDR-TB | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172717 | Other | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173566 | Other | lineage1.1.2 | None | SRR1173833 | Other | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR13888750 | Other | La2 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR15315797 | RR-TB | lineage2.2.1 | None |
|---|
