Rv0668 - c.-399G>C
Drug resistance types
51 Sensitive
53 RR-TB
11 HR-TB
27 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
71 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 67 |
| 1 | |
| lineage4.7 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4.6 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.8 | 43 |
| lineage4.1.2 | 1 |
| lineage2.2.1 | 23 |
| lineage1.1.2 | 2 |
| lineage3 | 11 |
| lineage4.1.1.1 | 3 |
| lineage4.1.2.1 | 3 |
| lineage4.8.1 | 3 |
| lineage4.4 | 1 |
| lineage3;lineage4 | 1 |
| La2 | 1 |
| lineage4.4.1.1 | 4 |
| lineage4.4.1.1.1 | 3 |
| lineage2.2.2 | 4 |
| lineage4.3.3 | 5 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.2.1 | 3 |
| lineage4.1.1.3.1 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage4.9 | 4 |
| lineage2.2;lineage4 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.8;lineage4.9 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.5 | 2 |
| lineage3.1.1 | 2 |
| La1.2 | 1 |
| lineage4.1.3 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.3.1.1 | 1 |
| lineage3.1.2.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| La1.4 | 1 |
| lineage2;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 222 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045832 | Other | lineage4.9 | None | ERR4796577 | HR-TB | None | SRR1180250 | Other | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR6131528 | Sensitive | lineage4.1.1.3 | None | SRR6044936 | Other | lineage4.6 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR2228910 | Other | lineage4.8 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR1013527 | Other | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR4821143 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR1173566 | Other | lineage1.1.2 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR2513259 | Other | lineage3 | None | ERR176741 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR978762 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR1063855 | Other | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR9117788 | Other | lineage3 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR3797062 | RR-TB | lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR1062865 | Sensitive | lineage2.2.2 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR1106670 | Sensitive | lineage4.9 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1183128 | Other | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | ERR978734 | RR-TB | lineage4.8 | None | SAMN02598978 | Other | lineage1.1.2 | None | SRR5818672 | Other | lineage1.2.2.2 | None | ERR017781 | Other | lineage3 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR5007165 | Other | lineage3 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR978761 | Other | lineage4.8 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR6046117 | Other | lineage4.9 | None | SRR7069518 | Other | lineage4.8 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR1180115 | Other | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR7070293 | Other | lineage4.8 | None | ERR4816470 | HR-TB | lineage3 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070329 | Other | lineage3 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR7069319 | Other | lineage4.5 | None | SRR1181299 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR1013531 | Sensitive | lineage4.9 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR4769419 | Sensitive | lineage4.9 | None | ERR978735 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR1181402 | Sensitive | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR5007170 | Other | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR978727 | Other | lineage4.8 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18213736 | Other | lineage3 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR10796565 | Other | lineage4.9 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070223 | HR-TB | lineage3 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR978756 | Other | lineage4.8 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR978752 | Other | lineage4.8 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR1184021 | Sensitive | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR2228838 | Other | lineage4.8 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR4815816 | Other | lineage4.5 | gb | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR1141261 | Sensitive | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR6397815 | Other | lineage4.4.1.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR2228900 | Other | lineage4.8 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR1062864 | Sensitive | lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR1181588 | Sensitive | lineage4.9 | None |
|---|
