Run ID: SRR6044936
Sample name:
Date: 04-04-2023 11:49:48
Number of reads: 333858
Percentage reads mapped: 17.37
Strain: lineage4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.68 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6610 | c.-692C>T | upstream_gene_variant | 0.29 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 762887 | c.-483G>C | upstream_gene_variant | 0.2 |
rpoB | 762893 | p.His1029Gln | missense_variant | 0.14 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.14 |
rpoC | 762926 | c.-444C>G | upstream_gene_variant | 0.13 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.28 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 0.26 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.35 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.38 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.39 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 0.39 |
rpoB | 763005 | p.Cys1067Val | missense_variant | 0.39 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 0.41 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 0.41 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.41 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 0.41 |
rpoC | 763043 | c.-327G>C | upstream_gene_variant | 0.44 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.5 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.58 |
rpoB | 763077 | p.Val1091Thr | missense_variant | 0.56 |
rpoC | 763085 | c.-285C>A | upstream_gene_variant | 0.38 |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.25 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.25 |
rpoC | 763578 | p.Phe70Tyr | missense_variant | 0.24 |
rpoC | 763598 | p.Arg77Lys | missense_variant | 0.29 |
rpoC | 763606 | c.237C>A | synonymous_variant | 0.25 |
rpoC | 763609 | c.240C>T | synonymous_variant | 0.18 |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.27 |
rpoC | 763618 | c.249C>T | synonymous_variant | 0.27 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.27 |
rpoC | 763625 | p.Lys86Arg | missense_variant | 0.27 |
rpoC | 763630 | c.261G>C | synonymous_variant | 0.27 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.27 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.3 |
rpoC | 763644 | p.Met92Thr | missense_variant | 0.73 |
rpoC | 763648 | c.279C>T | synonymous_variant | 0.18 |
rpoC | 763657 | p.Glu96Asp | missense_variant | 0.27 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.2 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.27 |
rpoC | 763672 | c.303C>T | synonymous_variant | 0.18 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.27 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.33 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.14 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.14 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.2 |
rpoC | 764491 | c.1122G>T | synonymous_variant | 0.26 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.24 |
rpoC | 764503 | c.1134G>T | synonymous_variant | 0.32 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.23 |
rpoC | 764512 | c.1143G>C | synonymous_variant | 0.29 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.3 |
rpoC | 764524 | c.1155C>T | synonymous_variant | 0.22 |
rpoC | 764530 | c.1161C>T | synonymous_variant | 0.3 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.24 |
rpoC | 764543 | p.Thr392Ala | missense_variant | 0.3 |
rpoC | 764548 | c.1179G>T | synonymous_variant | 0.29 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.33 |
rpoC | 764573 | p.Leu402Ile | missense_variant | 0.43 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.36 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.43 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.43 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.46 |
rpoC | 764605 | c.1236G>T | synonymous_variant | 0.44 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.41 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.37 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.37 |
rpoC | 764647 | c.1278C>T | synonymous_variant | 0.33 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.32 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 0.33 |
rpoC | 764656 | c.1287C>T | synonymous_variant | 0.25 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.33 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.32 |
rpoC | 764678 | p.Lys437Gln | missense_variant | 0.32 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.16 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.14 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.22 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779387 | p.Ser133Asn | missense_variant | 0.18 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781751 | c.192G>A | synonymous_variant | 0.2 |
rpsL | 781801 | p.Leu81Pro | missense_variant | 0.18 |
fbiC | 1303615 | c.688delC | frameshift_variant | 0.14 |
atpE | 1460964 | c.-81C>T | upstream_gene_variant | 0.4 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472068 | n.223T>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472089 | n.244C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472161 | n.316T>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472180 | n.335A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472181 | n.336G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472333 | n.488G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472396 | n.551A>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472398 | n.553T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472436 | n.591G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472437 | n.592T>G | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472445 | n.601dupT | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472462 | n.617T>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472473 | n.628G>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472474 | n.629C>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472476 | n.631A>G | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472484 | n.639A>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472496 | n.651T>G | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472686 | n.841G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472687 | n.843dupT | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472690 | n.845C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472803 | n.958T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472813 | n.968A>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472977 | n.1132G>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1473008 | n.1163C>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473277 | n.1432G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473301 | n.1456T>G | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473384 | n.-274A>G | upstream_gene_variant | 0.85 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474171 | n.514C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474185 | n.528G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474271 | n.614A>G | non_coding_transcript_exon_variant | 0.58 |
rrl | 1474272 | n.615C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474275 | n.618T>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474280 | n.623C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474281 | n.624A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474316 | n.659T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474317 | n.660G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474353 | n.696A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474354 | n.697C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474444 | n.787G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474454 | n.797G>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1474467 | n.810A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474483 | n.826C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.87 |
rrl | 1474496 | n.839C>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1474497 | n.840G>A | non_coding_transcript_exon_variant | 0.77 |
rrl | 1474506 | n.849C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474528 | n.871T>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474529 | n.872A>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474540 | n.883T>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474541 | n.884G>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474551 | n.894G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474634 | n.977T>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474636 | n.979A>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474640 | n.983C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474677 | n.1020A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474802 | n.1145T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474901 | n.1244A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474933 | n.1276A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474934 | n.1277C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475550 | n.1893A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475552 | n.1895G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475574 | n.1917C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475672 | n.2015C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475673 | n.2016T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475686 | n.2029C>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475696 | n.2039T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475715 | n.2058G>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.73 |
rrl | 1475767 | n.2110_2111insTT | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1475892 | n.2235A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475995 | n.2338G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475998 | n.2341C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476000 | n.2343G>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476518 | n.2861G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476529 | n.2872A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476542 | n.2885T>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476581 | n.2924G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476594 | n.2937C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476595 | n.2938C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476602 | n.2945G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476603 | n.2946G>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476608 | n.2951C>A | non_coding_transcript_exon_variant | 0.29 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.27 |
rpsA | 1833959 | p.Leu140Val | missense_variant | 0.14 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.29 |
rpsA | 1833971 | c.430C>T | synonymous_variant | 0.14 |
rpsA | 1833976 | c.435C>T | synonymous_variant | 0.12 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.29 |
rpsA | 1833994 | c.453G>C | synonymous_variant | 0.15 |
rpsA | 1833997 | c.456G>C | synonymous_variant | 0.15 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.25 |
rpsA | 1834009 | c.468C>T | synonymous_variant | 0.14 |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.15 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.23 |
rpsA | 1834024 | c.483G>C | synonymous_variant | 0.26 |
rpsA | 1834025 | p.Gln162Ala | missense_variant | 0.16 |
rpsA | 1834034 | p.Ile165Val | missense_variant | 0.11 |
rpsA | 1834040 | p.Lys167Arg | missense_variant | 0.17 |
rpsA | 1834051 | c.510G>A | synonymous_variant | 0.16 |
rpsA | 1834054 | c.513C>G | synonymous_variant | 0.15 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.24 |
rpsA | 1834366 | c.825A>C | synonymous_variant | 0.11 |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.12 |
rpsA | 1834387 | c.846C>T | synonymous_variant | 0.12 |
rpsA | 1834395 | p.Arg285Gln | missense_variant | 0.13 |
rpsA | 1834397 | p.His286Ala | missense_variant | 0.13 |
rpsA | 1834961 | p.Arg474Gly | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918034 | p.Val32Gly | missense_variant | 0.25 |
PPE35 | 2168080 | p.Thr845Ala | missense_variant | 1.0 |
PPE35 | 2170198 | p.Ala139Thr | missense_variant | 1.0 |
PPE35 | 2170602 | p.Ser4* | stop_gained | 0.22 |
PPE35 | 2170792 | c.-180T>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746993 | c.606C>T | synonymous_variant | 1.0 |
thyA | 3074648 | c.-177T>G | upstream_gene_variant | 0.33 |
Rv3083 | 3448703 | p.Arg67Leu | missense_variant | 0.29 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3640846 | p.Phe102Leu | missense_variant | 0.12 |
clpC1 | 4038831 | p.Asp625Gly | missense_variant | 0.2 |
embC | 4242179 | c.2317T>C | synonymous_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243498 | p.Val89Glu | missense_variant | 0.13 |
ethR | 4327756 | p.Ala70Ser | missense_variant | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |