EBG00000313339 - n.540C>T


Drug resistance types
19 Sensitive 38 RR-TB 11 HR-TB 28 MDR-TB 21 Pre-XDR-TB 0 XDR-TB 182 Other
lineage Counts
lineage Count
lineage4.3.3 17
lineage1.2.2 2
lineage3.1.2 1
lineage2.2.1 39
lineage3.1.1 3
lineage4.1.2.1;lineage4.9 1
lineage4.1.2.1 16
lineage4.9 31
lineage2.2.2 8
lineage4.6.1.1 2
lineage4.8 56
lineage3.1.1;lineage4.9 1
lineage4.2.1.1 1
lineage3 16
lineage4.3.3;lineage4.9 2
lineage4.5 1
lineage4.4.1.1 8
lineage4.4.1.1.1 3
lineage3;lineage4.9 3
La1.3;lineage1.2.2.2 1
lineage4.1.2 1
lineage2.2.1.1 2
lineage1.2.1.2.1 1
lineage4.7 4
lineage3.1 1
lineage1.1.3.3 1
lineage3.1.2.1 5
lineage4.3.4.1 3
lineage4.6 1
lineage1.2.1.1 1
lineage4.3.4.2 4
lineage4 3
lineage4.8;lineage4.9 1
lineage1.2.2.2 2
lineage4.1.1.1 3
lineage4.2.1 3
lineage1.1.3.1 3
lineage4.1.3 2
lineage4.2.2 1
lineage4.3.4.1;lineage4.9 2
lineage4.2.2.2 3
lineage4.8.1 3
lineage1.2.1.2 1
lineage5 2
lineage1.1.3.2 1
lineage4.4.2 4
lineage4.1.1.3 3
lineage4.6.2.2 4
La1.4 1
lineage4.3 1
lineage4.1 2
La1.8.1 1
1
lineage4.3.2 2
lineage4.3.4.2.1 2
lineage3;lineage4 2
lineage3.1.2;lineage4.1.1.3.1 1
lineage3.1.3 1
lineage4.3.4.2;lineage4.9 1
lineage1.1.1 2
La1.2 1
lineage4.1;lineage4.9 1
lineage4.2.1.1;lineage4.3.3 1
lineage4.6.1.2 1
lineage2.2.1;lineage2.2.2 1
spoligotype Counts
spoligotype Count
None 299
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR10796563 Other lineage4.3.3 None
ERR4818126 Other lineage1.2.2 None
ERR4814356 Other lineage3.1.2 None
SRR11342636 MDR-TB lineage4.3.3 None
SRR023450 RR-TB lineage2.2.1 None
SRR6044983 Other lineage3.1.1 None
ERR10796627 Other lineage4.1.2.1;lineage4.9 None
ERR4820959 Other lineage4.1.2.1 None
SRR3675582 Other lineage4.9 None
ERR4816425 Other lineage2.2.2 None
SRR1173361 MDR-TB lineage4.6.1.1 None
SRR18002981 Other lineage2.2.1 None
ERR4819555 Other lineage4.8 None
ERR867570 RR-TB lineage4.9 None
ERR171142 Other lineage3.1.1;lineage4.9 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
ERR4815811 Other lineage4.2.1.1 None
SRR11342646 HR-TB lineage3 None
SRR023487 RR-TB lineage2.2.1 None
ERR10796615 Other lineage4.3.3;lineage4.9 None
ERR4817826 Other lineage4.5 None
SRR11342698 RR-TB lineage4.4.1.1 None
ERR3276170 Other lineage4.1.2.1 nl
ERR4815901 Other lineage2.2.2 None
SRR19303907 Other lineage4.8 None
ERR4814714 Other lineage3 None
SAMEA3501067 RR-TB lineage4.8 None
SRR11342638 MDR-TB lineage4.4.1.1.1 None
ERR4818831 Other lineage3 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
ERR4817584 Other lineage3;lineage4.9 None
SRR6045158 Other lineage4.9 None
SRR16156775 Other lineage4.9 None
ERR4819217 Other La1.3;lineage1.2.2.2 None
ERR4818522 Other lineage3 None
ERR4814748 Other lineage4.8 None
SRR11342658 RR-TB lineage4.1.2 None
ERR3275615 Sensitive lineage4.4.1.1 nl
ERR4821679 Other lineage4.3.3 None
SRR12062533 Pre-XDR-TB lineage2.2.1.1 None
ERR4821214 Other lineage1.2.1.2.1 None
SRR18003045 Other lineage2.2.1 None
ERR978726_ERR978727 RR-TB lineage4.8 None
ERR978754 RR-TB lineage4.8 None
ERR867522 Pre-XDR-TB lineage2.2.1 None
ERR4821288 Other lineage4.7 None
ERR4815427 HR-TB lineage3.1 gb
ERR4817751 Other lineage1.1.3.3 None
ERR4819011 Other lineage3.1.2.1 None
ERR978755 RR-TB lineage4.8 None
ERR10796562 Other lineage4.3.4.1 None
SRR6044936 Other lineage4.6 None
ERR2027209 MDR-TB lineage1.2.1.1 None
SRR11342649 MDR-TB lineage4.3.3 None
SRR11342673 RR-TB lineage4.3.4.2 None
ERR4819017 Other lineage3 None
SRR18003046 MDR-TB lineage2.2.1 None
ERR4819579 HR-TB lineage4.3.3 None
SRR21240055 Other lineage4.1.2.1 None
SRR3675265 Other lineage4 None
SRR18002974 Other lineage2.2.1 None
SRR1181194 Sensitive lineage4.9 None
SRR7069391 Other lineage4.9 None
ERR978747 Other lineage4.8 None
ERR10796628 Other lineage4.3.3 None
ERR2228810 Other lineage4.8;lineage4.9 None
ERR9117827 Other lineage1.2.2.2 None
ERR4814362 Other lineage4.8 None
ERR10796626 Other lineage4.1.2.1 None
SRR6046117 Other lineage4.9 None
SAMEA3501015 Other lineage4.8 None
ERR10219876 Other lineage4.3.4.2 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR867524 Pre-XDR-TB lineage4.2.1 None
ERR10796634 Other lineage4.7 None
ERR4821417 Other lineage1.1.3.1 None
SRR5341365 Pre-XDR-TB lineage3 None
ERR867573 Other lineage4.9 None
ERR2228838 Other lineage4.8 None
ERR4818851 RR-TB lineage4.4.1.1 None
SRR11342671 RR-TB lineage4.1.3 None
SAMN02360586 HR-TB lineage2.2.1 None
ERR4819784 Other lineage4.1.2.1 None
ERR4818988 Other lineage1.2.2 None
ERR4822085 Other lineage4.8 gb
SRR11342660 MDR-TB lineage2.2.1 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR19304104 Other lineage4.8 None
ERR4819192 Other lineage3 None
ERR10796565 Other lineage4.9 None
ERR4820188 Other lineage3 gb
SRR18002874 MDR-TB lineage2.2.1 None
ERR4821769 Other lineage4.1.2.1 None
ERR10796591 Other lineage4.9 None
ERR4818570 Other lineage4.3.3 None
ERR10796572 Other lineage4.3.4.1;lineage4.9 None
SRR5152914 MDR-TB lineage2.2.1 None
SRR11342688 Other lineage4.2.2.2 None
ERR4821286 Other lineage4.8 None
ERR4819096 Other lineage4.4.1.1 None
ERR867572 Other lineage4.9 None
ERR4816831 Other lineage4.1.2.1 None
SRR11342693 MDR-TB lineage4.8.1 None
SRR7070195 Sensitive lineage3.1.2.1 None
ERR978693 Other lineage4.8 None
SRR20969475 Other lineage1.2.1.2 None
ERR4814994 HR-TB lineage2.2.1 gb
ERR4821334 Other lineage4.1.3 None
ERR4817189 Other lineage4.7 None
SRR7131030 Other lineage4.1.2.1 None
ERR4816954 Other lineage4.1.2.1 None
SRR6046359 Other lineage4.7 None
ERR867541 MDR-TB lineage4.2.1 None
SRR6046376 Other lineage3 None
SRR11342664 MDR-TB lineage2.2.2 None
ERR4816967 Other lineage5 None
ERR4815268 Sensitive lineage4.8 None
ERR4814312 Other lineage4 None
SRR7131149 Pre-XDR-TB lineage4.8 None
ERR2514801 Other lineage1.1.3.2 gb
SRR8651633 Pre-XDR-TB lineage4.4.2 None
ERR2229366 Other lineage4.8 None
ERR10796560 Other lineage4.9 None
SRR11342640 MDR-TB lineage4.3.3 None
ERR10796577 Other lineage4.9 None
SRR10315556 Sensitive lineage2.2.1 None
ERR867567 RR-TB lineage3 None
ERR2446154 Sensitive lineage4.4.1.1 nl
ERR4819265 HR-TB lineage4.3.4.1 None
ERR4815898 Other lineage3 None
SRR3675509 Other lineage4.9 None
ERR10796558 Sensitive lineage4.3.4.1;lineage4.9 None
SRR1013569 Pre-XDR-TB lineage2.2.1 None
ERR2228899 Other lineage4.8 None
ERR2228900 Other lineage4.8 None
ERR2512423 Other lineage4.1.1.3 None
SRR7069648 Other lineage4.6.2.2 None
ERR867538 Other lineage4.2.2.2 None
ERR4819640 RR-TB lineage4.6.2.2 None
SRR6832644 Other lineage4.3.3;lineage4.9 None
ERR10796597 Other lineage4.3.3 None
ERR4815301 Other lineage4.4.2 None
ERR978752 Other lineage4.8 None
ERR4819766 Other lineage4.4.1.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR19303820 RR-TB lineage4.8 None
ERR10796598 Other lineage4.9 None
ERR2229540 Sensitive lineage4.8 None
SAMN02360564 Pre-XDR-TB lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR11342647 MDR-TB lineage4.1.1.3 None
ERR978734_ERR978733_ERR978735 RR-TB lineage4.8 None
ERR978746 RR-TB lineage4.8 None
ERR4819324 Other lineage4.8 gb
ERR4818691 Other lineage4.8 None
SRR6045957 Other lineage4.9 None
ERR502470 RR-TB lineage4.9 None
SRR16278274 Other La1.4 None
ERR4816510 Other lineage4.1.2.1 None
ERR10796593 Other lineage4.3 None
ERR2229147 Other lineage4.8 None
ERR867571 Other lineage4.9 None
ERR4815118 Other lineage2.2.2 None
SAMEA3501070 RR-TB lineage4.8 None
ERR4820324 Other lineage4 None
SRR1238558 Other lineage4.9 None
ERR4814896 Other lineage2.2.1.1 None
ERR4815502 Other lineage4.1 None
ERR4819699 HR-TB lineage4.6.2.2 gb
ERR867525 Pre-XDR-TB lineage2.2.1 None
SRR1735598 RR-TB lineage4.9 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
ERR978760 RR-TB lineage4.8 None
ERR867569 Other lineage4.9 None
SAMEA3501052 RR-TB lineage4.8 None
ERR017781 Other lineage3 None
SRR8600288 Other La1.8.1 None
SAMEA3501046 RR-TB lineage4.8 None
ERR4819491 Other lineage4.1.2.1 None
ERR4817060 Other None
ERR176718 Sensitive lineage2.2.1 None
SRR7070369 Other lineage1.2.2.2 None
ERR4820798 Other lineage3.1.2.1 gb
SRR22048536 Other lineage4.3.3 None
ERR978733 RR-TB lineage4.8 None
ERR4819307 Other lineage4.3.2 None
ERR978746_ERR978747_ERR978748 RR-TB lineage4.8 None
ERR4822261 RR-TB lineage2.2.1 None
SAMN02567676 MDR-TB lineage4.6.1.1 None
SRR1013613 Sensitive lineage2.2.1 None
ERR978694_ERR978693 Other lineage4.8 None
ERR019855 Other lineage3 None
ERR4820833 Other lineage3;lineage4.9 None
ERR4819765 Other lineage4.1 None
ERR978726 RR-TB lineage4.8 None
SRR11342687 RR-TB lineage4.2.2.2 None
ERR4814763 Other lineage2.2.1 None
ERR4820019 Other lineage4.3.4.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
ERR4816569 Sensitive lineage4.3.3 gb
ERR4819772 Other lineage1.1.3.1 None
ERR4821310 Other lineage5 None
SRR3675230 Other lineage3;lineage4 None
ERR10796571 Other lineage4.9 None
SRR18002984 MDR-TB lineage2.2.2 None
ERR978750_ERR978752_ERR978751 RR-TB lineage4.8 None
SRR11342668 Pre-XDR-TB lineage4.8.1 None
ERR4817134 HR-TB lineage2.2.1 None
SRR7069800 Other lineage3.1.2.1 None
SRR11342686 MDR-TB lineage4.8 None
SRR11342651 MDR-TB lineage4.1.1.1 None
ERR978755_ERR978756_ERR978754_ERR978757 RR-TB lineage4.8 None
ERR4822021 Other lineage4.8 gb
SRR18002963 Other lineage2.2.1 None
ERR4818538 Sensitive lineage3 gb
ERR10796640 Other lineage4.1.2.1 None
ERR867554 Other lineage4.3.4.1 None
ERR4820723 Other lineage4.4.1.1 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
ERR2514430 Other lineage3.1.2;lineage4.1.1.3.1 None
SRR11342653 MDR-TB lineage2.2.1 None
ERR867523 Pre-XDR-TB lineage2.2.1 None
SRR6046087 Sensitive lineage4.9 None
ERR10796596 Other lineage4.9 None
ERR4816944 Other lineage2.2.2 None
ERR2027220 Sensitive lineage3.1.3 None
ERR10796578 Other lineage2.2.1 None
SRR7069137 Other lineage4.8 None
SAMEA3501063 RR-TB lineage4.8 None
SRR5153833 Other lineage2.2.1 None
ERR4816417 Other lineage4.9 None
SRR7131121 Other lineage4.3.3 None
ERR4821704 Other lineage4.3.3 None
ERR4821958 Other lineage4.3.3 gb
ERR2228910 Other lineage4.8 None
ERR4820161 Other lineage3 None
ERR2229204 Other lineage4.8 None
SRR1173421 Other lineage4.9 None
ERR10796631 Other lineage4.3.4.2;lineage4.9 None
ERR4820410 RR-TB lineage3.1.1 None
SRR1238557 Other lineage4.9 None
ERR10796636 Other lineage4.1.2.1 None
ERR4817554 Other lineage1.1.1 None
ERR10796589 Other lineage4.9 None
SRR21658550 Other lineage1.1.1 None
SRR1013570 Pre-XDR-TB lineage2.2.1 None
ERR978750 RR-TB lineage4.8 None
ERR4814617 Other lineage1.1.3.1 None
SRR7851312 Other La1.2 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
ERR2515032 Other lineage3 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18002947 MDR-TB lineage2.2.1 None
ERR10796566 Other lineage4.9 None
ERR10796629 Other lineage4.1;lineage4.9 None
ERR10796632 Other lineage4.3.3 None
SAMEA3501065 RR-TB lineage4.8 None
ERR4821812 Sensitive lineage4.8 gb
ERR4818407 Other lineage4.3.2 None
SRR11342662 MDR-TB lineage4.8.1 None
SRR10315464 MDR-TB lineage4.4.1.1 None
ERR10796635 Other lineage4.8 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR2513382 RR-TB lineage4.1.1.3 None
SRR7070134 Other lineage3.1.1 None
ERR4822104 Other lineage3;lineage4.9 None
ERR4819329 Sensitive lineage4.6.2.2 None
ERR867527 Pre-XDR-TB lineage2.2.1 None
ERR4815910 Other lineage4.1.2.1 None
ERR4816310 HR-TB lineage4.6.1.2 None
SRR12062493 Pre-XDR-TB lineage4.4.2 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR7131123 Other lineage4.8 None
ERR2229436 Other lineage4.8 None
SRR11342669 Other lineage4.8 None
ERR4815022 Other lineage3.1.2.1 None
ERR10796564 Other lineage4.3.3 None
ERR4818393 RR-TB lineage3;lineage4 None
ERR10796599 Other lineage4.8 None
ERR4814986 Other lineage4.3.4.2 None
DRR473778 Sensitive lineage2.2.1 None
ERR10796633 Other lineage4.3.4.2 None
ERR4820817 Other lineage4.1.2.1 None
ERR867575 Other lineage4.9 None
SRR21727760 Other lineage2.2.1 None
SRR6046497 Sensitive lineage4.9 None
SRR1013614 Sensitive lineage2.2.1 None
ERR4816610 Other lineage4.3.3 None
ERR10796620 Other lineage4.1.1.1 None
ERR978761_ERR978762_ERR978760 RR-TB lineage4.8 None
SRR7755654 Pre-XDR-TB lineage4.2.1 None
ERR978735 Other lineage4.8 None
ERR978762 Other lineage4.8 None
SRR11342691 MDR-TB lineage2.2.1 None
SRR5818647 Other lineage4.3.4.2.1 None
ERR4816745 Pre-XDR-TB lineage2.2.1 None
ERR4815909 Other lineage4.8 None
SAMN02360571 HR-TB lineage2.2.1;lineage2.2.2 None
ERR4816493 Other lineage4.1.2.1 None