EBG00000313339 - n.540C>T
Drug resistance types
19 Sensitive
38 RR-TB
11 HR-TB
28 MDR-TB
20 Pre-XDR-TB
0 XDR-TB
182 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 56 |
| lineage4.3.3 | 17 |
| lineage4.8.1 | 3 |
| lineage4.3.4.1 | 3 |
| lineage4.1.1.3 | 3 |
| lineage3.1.1 | 3 |
| lineage3;lineage4.9 | 3 |
| lineage4.6.2.2 | 4 |
| lineage2.2.1 | 39 |
| lineage4.1.2.1 | 16 |
| lineage4.6.1.2 | 1 |
| lineage4.4.2 | 3 |
| lineage2.2.2 | 8 |
| lineage4 | 3 |
| lineage3 | 16 |
| lineage4.9 | 31 |
| lineage1.2.2.2 | 2 |
| lineage4.3.4.2 | 4 |
| lineage4.2.1 | 3 |
| lineage4.7 | 4 |
| lineage1.1.3.1 | 3 |
| lineage3;lineage4 | 2 |
| lineage4.1.3 | 2 |
| lineage3.1.2.1 | 5 |
| lineage4.2.2 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.4.1.1 | 8 |
| lineage4.3.3;lineage4.9 | 2 |
| lineage4.3.4.1;lineage4.9 | 2 |
| lineage4.4.1.1.1 | 3 |
| lineage1.1.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| La1.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.1 | 2 |
| lineage4.1;lineage4.9 | 1 |
| 1 | |
| lineage1.1.3.3 | 1 |
| lineage4.6 | 1 |
| lineage4.1.1.1 | 3 |
| lineage4.3.4.2.1 | 2 |
| lineage1.2.2 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.2.2.2 | 3 |
| lineage1.2.1.2 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage3.1.3 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.3.4.2;lineage4.9 | 1 |
| La1.3;lineage1.2.2.2 | 1 |
| lineage4.1.2 | 1 |
| La1.4 | 1 |
| lineage3.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.8;lineage4.9 | 1 |
| lineage5 | 2 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.5 | 1 |
| lineage4.3 | 1 |
| La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 298 |
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4821812 | Sensitive | lineage4.8 | gb | SRR22048536 | Other | lineage4.3.3 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR7070134 | Other | lineage3.1.1 | None | ERR4822104 | Other | lineage3;lineage4.9 | None | ERR4819329 | Sensitive | lineage4.6.2.2 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR3675265 | Other | lineage4 | None | ERR2229436 | Other | lineage4.8 | None | ERR019855 | Other | lineage3 | None | SRR1181194 | Sensitive | lineage4.9 | None | SRR7069391 | Other | lineage4.9 | None | ERR978747 | Other | lineage4.8 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR10796626 | Other | lineage4.1.2.1 | None | ERR10796599 | Other | lineage4.8 | None | SRR6046117 | Other | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR10796634 | Other | lineage4.7 | None | ERR4821417 | Other | lineage1.1.3.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR867573 | Other | lineage4.9 | None | ERR2228838 | Other | lineage4.8 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR978735 | Other | lineage4.8 | None | ERR10796571 | Other | lineage4.9 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR4817134 | HR-TB | lineage2.2.1 | None | SRR7069800 | Other | lineage3.1.2.1 | None | ERR4815909 | Other | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR4819784 | Other | lineage4.1.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR19304104 | Other | lineage4.8 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR10796565 | Other | lineage4.9 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR10796591 | Other | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR5152914 | MDR-TB | lineage2.2.1 | None | SRR1173361 | MDR-TB | lineage4.6.1.1 | None | ERR4821286 | Other | lineage4.8 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4819555 | Other | lineage4.8 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046087 | Sensitive | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | SRR7131030 | Other | lineage4.1.2.1 | None | SRR5153833 | Other | lineage2.2.1 | None | ERR4816417 | Other | lineage4.9 | None | ERR10796615 | Other | lineage4.3.3;lineage4.9 | None | ERR4821704 | Other | lineage4.3.3 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR19303907 | Other | lineage4.8 | None | ERR867567 | RR-TB | lineage3 | None | ERR4815898 | Other | lineage3 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | ERR4814714 | Other | lineage3 | None | ERR2228900 | Other | lineage4.8 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR6045158 | Other | lineage4.9 | None | ERR978752 | Other | lineage4.8 | None | SRR16156775 | Other | lineage4.9 | None | ERR4821679 | Other | lineage4.3.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4819324 | Other | lineage4.8 | gb | ERR978750 | RR-TB | lineage4.8 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR7851312 | Other | La1.2 | None | ERR2229147 | Other | lineage4.8 | None | ERR867571 | Other | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR2515032 | Other | lineage3 | None | SRR1238558 | Other | lineage4.9 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR017781 | Other | lineage3 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR4817060 | Other | None | ERR176718 | Sensitive | lineage2.2.1 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | ERR4817751 | Other | lineage1.1.3.3 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR10796635 | Other | lineage4.8 | None | SRR6044936 | Other | lineage4.6 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR4819017 | Other | lineage3 | None | SRR1013613 | Sensitive | lineage2.2.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR4814986 | Other | lineage4.3.4.2 | None | DRR473778 | Sensitive | lineage2.2.1 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR4822021 | Other | lineage4.8 | gb | SRR18002963 | Other | lineage2.2.1 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR4818126 | Other | lineage1.2.2 | None | ERR4822085 | Other | lineage4.8 | gb | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR4816425 | Other | lineage2.2.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | ERR4816831 | Other | lineage4.1.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR10796596 | Other | lineage4.9 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR2027220 | Sensitive | lineage3.1.3 | None | ERR4816954 | Other | lineage4.1.2.1 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR7069137 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR7131121 | Other | lineage4.3.3 | None | ERR4815268 | Sensitive | lineage4.8 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR4814312 | Other | lineage4 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR11342640 | MDR-TB | lineage4.3.3 | None | ERR4820161 | Other | lineage3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR2229204 | Other | lineage4.8 | None | SRR1173421 | Other | lineage4.9 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR10796631 | Other | lineage4.3.4.2;lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1238557 | Other | lineage4.9 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4819766 | Other | lineage4.4.1.1 | None | ERR4819217 | Other | La1.3;lineage1.2.2.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR2229540 | Sensitive | lineage4.8 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR4814617 | Other | lineage1.1.3.1 | None | SRR16278274 | Other | La1.4 | None | ERR4815118 | Other | lineage2.2.2 | None | ERR4819699 | HR-TB | lineage4.6.2.2 | gb | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR4815427 | HR-TB | lineage3.1 | gb | SRR7070369 | Other | lineage1.2.2.2 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819307 | Other | lineage4.3.2 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SAMN02567676 | MDR-TB | lineage4.6.1.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR11342669 | Other | lineage4.8 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4814362 | Other | lineage4.8 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | ERR4819765 | Other | lineage4.1 | None | ERR978726 | RR-TB | lineage4.8 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR867575 | Other | lineage4.9 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR6046497 | Sensitive | lineage4.9 | None | SRR1013614 | Sensitive | lineage2.2.1 | None | ERR4816569 | Sensitive | lineage4.3.3 | gb | ERR4819772 | Other | lineage1.1.3.1 | None | ERR4821310 | Other | lineage5 | None | ERR978762 | Other | lineage4.8 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4816493 | Other | lineage4.1.2.1 | None | ERR4818538 | Sensitive | lineage3 | gb | ERR4814356 | Other | lineage3.1.2 | None | ERR4818988 | Other | lineage1.2.2 | None | ERR4819192 | Other | lineage3 | None | ERR4820723 | Other | lineage4.4.1.1 | None | ERR4820188 | Other | lineage3 | gb | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | ERR867572 | Other | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | ERR4814994 | HR-TB | lineage2.2.1 | gb | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817189 | Other | lineage4.7 | None | ERR4816944 | Other | lineage2.2.2 | None | ERR4815811 | Other | lineage4.2.1.1 | None | SRR11342646 | HR-TB | lineage3 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR6046376 | Other | lineage3 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR4817826 | Other | lineage4.5 | None | ERR4816967 | Other | lineage5 | None | ERR2229366 | Other | lineage4.8 | None | ERR10796560 | Other | lineage4.9 | None | ERR10796577 | Other | lineage4.9 | None | ERR4815901 | Other | lineage2.2.2 | None | ERR4821958 | Other | lineage4.3.3 | gb | ERR2228910 | Other | lineage4.8 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | ERR2228899 | Other | lineage4.8 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR4818831 | Other | lineage3 | None | SRR7069648 | Other | lineage4.6.2.2 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | ERR10796597 | Other | lineage4.3.3 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR10796589 | Other | lineage4.9 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR21658550 | Other | lineage1.1.1 | None | ERR4818522 | Other | lineage3 | None | ERR4814748 | Other | lineage4.8 | None | ERR10796598 | Other | lineage4.9 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818691 | Other | lineage4.8 | None | SRR6045957 | Other | lineage4.9 | None | ERR4816510 | Other | lineage4.1.2.1 | None | ERR10796593 | Other | lineage4.3 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR4820324 | Other | lineage4 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR10796566 | Other | lineage4.9 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR867569 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR8600288 | Other | La1.8.1 | None | ERR4821288 | Other | lineage4.7 | None |
|---|
