Run ID: ERR2228810
Sample name:
Date: 31-03-2023 16:21:38
Number of reads: 389023
Percentage reads mapped: 31.69
Strain: lineage4
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761089 | p.Ser428Thr | missense_variant | 0.29 | rifampicin |
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.22 | rifampicin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.36 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.78 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.76 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5345 | p.Ser36Pro | missense_variant | 0.18 |
gyrB | 6422 | p.Trp395Arg | missense_variant | 0.5 |
gyrB | 7084 | p.Glu615Asp | missense_variant | 0.4 |
gyrA | 7300 | c.-2A>T | upstream_gene_variant | 0.38 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7571 | c.270G>T | synonymous_variant | 0.33 |
gyrA | 8445 | p.Arg382Cys | missense_variant | 0.2 |
gyrA | 9159 | c.1862delC | frameshift_variant | 0.29 |
gyrA | 9631 | p.Val777Asp | missense_variant | 0.4 |
mshA | 575293 | c.-55T>G | upstream_gene_variant | 0.22 |
mshA | 576414 | p.Gly356Val | missense_variant | 0.4 |
mshA | 576462 | p.Ala372Glu | missense_variant | 0.4 |
rpoB | 759641 | c.-166T>G | upstream_gene_variant | 0.29 |
rpoB | 759666 | c.-141T>C | upstream_gene_variant | 0.33 |
rpoB | 761084 | c.1278C>A | synonymous_variant | 0.29 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.33 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.4 |
rpoB | 761111 | c.1305C>T | synonymous_variant | 0.29 |
rpoB | 761231 | c.1425C>T | synonymous_variant | 0.25 |
rpoB | 761234 | c.1428G>T | synonymous_variant | 0.25 |
rpoB | 761246 | c.1440C>T | synonymous_variant | 0.25 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.29 |
rpoB | 761422 | p.Asn539Ile | missense_variant | 0.33 |
rpoB | 761516 | c.1710G>T | synonymous_variant | 0.29 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.29 |
rpoB | 762236 | c.2430G>T | synonymous_variant | 0.25 |
rpoB | 762245 | c.2439G>T | synonymous_variant | 0.27 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.27 |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.27 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.14 |
rpoB | 762878 | p.Ile1024Met | missense_variant | 0.31 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.29 |
rpoC | 762899 | c.-471G>T | upstream_gene_variant | 0.59 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.67 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.57 |
rpoC | 762959 | c.-411G>T | upstream_gene_variant | 0.38 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.39 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.27 |
rpoC | 762989 | c.-381G>A | upstream_gene_variant | 0.23 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.27 |
rpoB | 763090 | p.Lys1095Met | missense_variant | 0.33 |
rpoC | 763340 | c.-30T>A | upstream_gene_variant | 0.22 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.5 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.56 |
rpoC | 763537 | c.168C>G | synonymous_variant | 0.58 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.62 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.65 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.62 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.62 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.59 |
rpoC | 763627 | p.Lys86Asn | missense_variant | 0.62 |
rpoC | 763642 | c.273G>T | synonymous_variant | 0.57 |
rpoC | 763648 | c.279C>A | synonymous_variant | 0.5 |
rpoC | 763651 | c.282C>T | synonymous_variant | 0.45 |
rpoC | 763654 | c.285C>T | synonymous_variant | 0.45 |
rpoC | 763682 | p.Trp105Arg | missense_variant | 0.29 |
rpoC | 763805 | p.Asn146Asp | missense_variant | 0.17 |
rpoC | 765619 | p.Glu750Asp | missense_variant | 0.25 |
rpoC | 766240 | c.2871T>A | synonymous_variant | 0.25 |
rpoC | 766377 | p.Ile1003Thr | missense_variant | 0.17 |
rpoC | 766981 | c.3612T>G | synonymous_variant | 0.29 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776392 | p.Asp697Asn | missense_variant | 0.29 |
mmpL5 | 776671 | p.Phe604Val | missense_variant | 0.22 |
mmpL5 | 777195 | p.Glu429Val | missense_variant | 0.25 |
mmpL5 | 777340 | p.Lys381* | stop_gained | 0.22 |
mmpL5 | 777354 | p.Val376Gly | missense_variant | 0.25 |
mmpL5 | 778078 | p.Thr135Pro | missense_variant | 0.25 |
mmpR5 | 779077 | p.Arg30Trp | missense_variant | 0.5 |
mmpR5 | 779189 | p.Ile67Ser | missense_variant | 0.25 |
mmpS5 | 779606 | c.-701C>A | upstream_gene_variant | 0.17 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.25 |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.27 |
rpsL | 781679 | c.120C>G | synonymous_variant | 0.25 |
rpsL | 781682 | c.123T>G | synonymous_variant | 0.27 |
rpsL | 781755 | p.Tyr66Asp | missense_variant | 0.2 |
fbiC | 1303250 | p.Phe107Ser | missense_variant | 0.21 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1303880 | p.Thr317Lys | missense_variant | 0.22 |
fbiC | 1304050 | p.Leu374Val | missense_variant | 0.25 |
atpE | 1460995 | c.-50A>T | upstream_gene_variant | 0.4 |
rrs | 1471878 | n.33C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1471896 | n.51T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1471900 | n.55C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472085 | n.240C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472107 | n.262A>G | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472225 | n.380C>G | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472251 | n.406G>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472279 | n.434T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472368 | n.523A>G | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472396 | n.551A>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472507 | n.662C>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472522 | n.677T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472571 | n.726G>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472582 | n.737G>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472585 | n.740A>C | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472767 | n.922G>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472812 | n.967A>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472880 | n.1035_1036insA | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472954 | n.1110delC | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472958 | n.1113_1114insC | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472986 | n.1141_1142insA | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472989 | n.1145delA | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472996 | n.1151T>C | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473091 | n.1246G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473094 | n.1249T>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473099 | n.1254T>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473100 | n.1255G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473109 | n.1264T>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473120 | n.1275C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473122 | n.1277T>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473123 | n.1278A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473226 | n.1381C>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473288 | n.1443C>G | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473292 | n.1447G>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473294 | n.1449A>G | non_coding_transcript_exon_variant | 0.79 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473315 | n.1470T>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 0.79 |
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473862 | n.205C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1473887 | n.230T>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474166 | n.509G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474167 | n.510T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474186 | n.529A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474202 | n.545T>G | non_coding_transcript_exon_variant | 0.69 |
rrl | 1474218 | n.561T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474253 | n.596A>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474283 | n.626A>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474454 | n.797G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474467 | n.810A>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474488 | n.831G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474496 | n.839C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474516 | n.859C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.48 |
rrl | 1474582 | n.925T>A | non_coding_transcript_exon_variant | 0.69 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474752 | n.1096delA | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474798 | n.1141C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474799 | n.1143delT | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474803 | n.1146_1147insA | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474806 | n.1149A>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.69 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.69 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474853 | n.1196A>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1475171 | n.1514C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475175 | n.1518G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475574 | n.1917C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475713 | n.2056C>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475722 | n.2065G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475747 | n.2090A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1475877 | n.2220C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1475892 | n.2235A>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476117 | n.2460G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476130 | n.2473G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476235 | n.2578A>G | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476363 | n.2706A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476366 | n.2709A>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476374 | n.2717T>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476523 | n.2866T>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476595 | n.2938C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476720 | n.3063G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476721 | n.3064G>T | non_coding_transcript_exon_variant | 0.33 |
rpsA | 1833646 | p.Asp35Glu | missense_variant | 0.25 |
rpsA | 1833942 | p.Val134Ala | missense_variant | 0.25 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.13 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.19 |
rpsA | 1833994 | c.453G>C | synonymous_variant | 0.13 |
rpsA | 1833997 | c.456G>T | synonymous_variant | 0.19 |
rpsA | 1834000 | c.459G>T | synonymous_variant | 0.24 |
rpsA | 1834012 | c.471G>A | synonymous_variant | 0.22 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.2 |
rpsA | 1834018 | c.477C>T | synonymous_variant | 0.2 |
rpsA | 1834024 | c.483G>C | synonymous_variant | 0.21 |
rpsA | 1834034 | p.Ile165Val | missense_variant | 0.25 |
rpsA | 1834039 | c.498C>T | synonymous_variant | 0.21 |
rpsA | 1834040 | p.Lys167Gln | missense_variant | 0.21 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.29 |
rpsA | 1834090 | c.549G>T | synonymous_variant | 0.25 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.28 |
rpsA | 1834105 | c.564C>T | synonymous_variant | 0.33 |
rpsA | 1834108 | c.567C>G | synonymous_variant | 0.33 |
rpsA | 1834114 | c.573G>C | synonymous_variant | 0.25 |
rpsA | 1834189 | c.648G>C | synonymous_variant | 0.15 |
rpsA | 1834213 | c.672G>C | synonymous_variant | 0.18 |
rpsA | 1834216 | c.675C>T | synonymous_variant | 0.27 |
rpsA | 1834219 | c.678C>T | synonymous_variant | 0.25 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.18 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.2 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.22 |
rpsA | 1834241 | c.700_702delCTGinsTTA | synonymous_variant | 0.22 |
rpsA | 1834246 | c.705G>C | synonymous_variant | 0.22 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.22 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.25 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.22 |
rpsA | 1834273 | c.732C>T | synonymous_variant | 0.25 |
rpsA | 1834658 | p.Phe373Val | missense_variant | 0.4 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918607 | p.Val223Gly | missense_variant | 0.33 |
ndh | 2101703 | p.Glu447Val | missense_variant | 0.33 |
ndh | 2101898 | p.Ile382Ser | missense_variant | 1.0 |
ndh | 2102652 | p.Phe131Ile | missense_variant | 0.29 |
katG | 2154427 | p.Asn562Thr | missense_variant | 0.4 |
katG | 2155549 | p.Val188Gly | missense_variant | 0.5 |
katG | 2156127 | c.-16T>A | upstream_gene_variant | 0.4 |
katG | 2156152 | c.-41G>T | upstream_gene_variant | 0.2 |
katG | 2156378 | c.-267T>C | upstream_gene_variant | 0.22 |
PPE35 | 2167779 | p.Asn945Thr | missense_variant | 0.29 |
PPE35 | 2168619 | p.Leu665* | stop_gained | 0.25 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169258 | p.Gln452Leu | missense_variant | 0.38 |
PPE35 | 2169660 | p.Asn318Ile | missense_variant | 0.5 |
PPE35 | 2170351 | p.Thr88Pro | missense_variant | 0.33 |
PPE35 | 2170714 | c.-102A>T | upstream_gene_variant | 0.4 |
Rv1979c | 2222283 | c.882C>A | synonymous_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289402 | c.-161T>A | upstream_gene_variant | 0.4 |
pncA | 2289947 | c.-706T>A | upstream_gene_variant | 0.5 |
kasA | 2518619 | p.Ser169Ala | missense_variant | 0.5 |
kasA | 2519029 | c.915C>T | synonymous_variant | 0.22 |
eis | 2715152 | p.Met61Leu | missense_variant | 0.2 |
folC | 2746179 | p.Thr474Ala | missense_variant | 0.29 |
folC | 2747179 | c.420T>G | synonymous_variant | 0.33 |
pepQ | 2859433 | p.Tyr329Phe | missense_variant | 0.3 |
pepQ | 2859834 | c.585T>G | synonymous_variant | 0.25 |
pepQ | 2860210 | p.Asp70Ala | missense_variant | 0.22 |
pepQ | 2860241 | p.Tyr60Asp | missense_variant | 0.29 |
pepQ | 2860308 | c.111C>T | synonymous_variant | 0.17 |
ribD | 2986695 | c.-144A>T | upstream_gene_variant | 0.29 |
ribD | 2987314 | p.Leu159Arg | missense_variant | 0.22 |
Rv2752c | 3065138 | p.Ile352Phe | missense_variant | 0.22 |
ald | 3087396 | p.Thr193Ala | missense_variant | 0.17 |
ald | 3087723 | p.Pro302Ser | missense_variant | 0.15 |
fbiD | 3339548 | p.Leu144Arg | missense_variant | 0.2 |
fbiD | 3339698 | p.Asp194Ala | missense_variant | 0.22 |
Rv3083 | 3448448 | c.-56A>T | upstream_gene_variant | 0.4 |
fprA | 3473895 | c.-112T>G | upstream_gene_variant | 0.2 |
fprA | 3474610 | p.Pro202Thr | missense_variant | 0.31 |
Rv3236c | 3612299 | p.Ile273Asn | missense_variant | 0.22 |
Rv3236c | 3612974 | p.Ile48Ser | missense_variant | 0.33 |
Rv3236c | 3612993 | p.Ser42Ala | missense_variant | 0.25 |
Rv3236c | 3613135 | c.-19G>C | upstream_gene_variant | 0.25 |
fbiB | 3641256 | c.-279A>G | upstream_gene_variant | 0.43 |
rpoA | 3877829 | p.Val227Phe | missense_variant | 0.25 |
rpoA | 3878400 | c.108T>C | synonymous_variant | 0.18 |
rpoA | 3878490 | c.18C>A | synonymous_variant | 0.67 |
clpC1 | 4039545 | p.Asp387Ala | missense_variant | 0.2 |
panD | 4044362 | c.-81T>A | upstream_gene_variant | 0.4 |
embC | 4239897 | p.Val12Ala | missense_variant | 0.17 |
embC | 4239911 | p.Thr17Ser | missense_variant | 0.22 |
embC | 4240107 | p.Leu82* | stop_gained | 0.22 |
embC | 4240982 | p.Ser374Arg | missense_variant | 0.2 |
embC | 4242147 | p.Asn762Thr | missense_variant | 0.33 |
embC | 4242186 | p.Asp775Ala | missense_variant | 0.4 |
embC | 4242386 | p.Asn842His | missense_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243764 | p.Lys178* | stop_gained | 0.22 |
embA | 4244362 | p.Asn377Thr | missense_variant | 0.22 |
embA | 4245599 | p.Lys789Asn | missense_variant | 0.29 |
embB | 4246534 | p.Arg7Ser | missense_variant | 0.29 |
embB | 4246709 | p.Ser66Arg | missense_variant | 0.33 |
embB | 4247028 | p.Leu172Gln | missense_variant | 0.2 |
embB | 4248309 | p.Phe599Cys | missense_variant | 0.33 |
embB | 4249145 | p.Thr878Pro | missense_variant | 0.29 |
ethR | 4328164 | p.Ile206Val | missense_variant | 0.13 |
whiB6 | 4338373 | p.Lys50Met | missense_variant | 0.33 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338676 | c.-155T>G | upstream_gene_variant | 0.5 |
gid | 4408473 | c.-271C>A | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |