Rv0668 - c.165T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
59 Sensitive
70 RR-TB
18 HR-TB
41 MDR-TB
14 Pre-XDR-TB
1 XDR-TB
82 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 43 |
| lineage3 | 9 |
| lineage4.4.1.1.1 | 4 |
| lineage4.9 | 101 |
| lineage2.2.2 | 3 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 9 |
| lineage4.3.3 | 5 |
| lineage2.2.1 | 33 |
| lineage4.6.2.2 | 1 |
| lineage4.6.1.2 | 5 |
| lineage4.2.2.2 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.8.1 | 3 |
| lineage1.1.1.1 | 1 |
| lineage3.1.1 | 3 |
| lineage1.2.1.2 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage4.2.1 | 7 |
| lineage4.1.2.1 | 6 |
| lineage4.6.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.7 | 2 |
| lineage4.6.5 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage2.2;lineage4 | 1 |
| La1.2 | 1 |
| lineage5.1.4 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| La1.4 | 1 |
| La1.6 | 1 |
| lineage4.4 | 1 |
| lineage4.3.2.1 | 2 |
| lineage3;lineage4 | 1 |
| lineage4.1.2 | 2 |
| lineage2;lineage4 | 1 |
| 1 | |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| La1.3 | 1 |
| lineage4.5 | 1 |
| lineage4 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 285 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR978765 | RR-TB | lineage4.8 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2228815 | Other | lineage4.8 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR9786076 | Sensitive | lineage3 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR11466014 | Sensitive | lineage4.3.4.2.1 | None | ERR323037 | Other | lineage4.9 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR978735 | Other | lineage4.8 | None | ERR502470 | RR-TB | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR978761 | Other | lineage4.8 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | ERR4815079 | RR-TB | lineage3 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR22424765 | HR-TB | lineage4.8 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR978752 | Other | lineage4.8 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR2229234 | Sensitive | lineage4.8 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR7645927 | Other | lineage4.8 | None | DRR184629 | Other | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR4818904 | Other | lineage4.8 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR978693 | Other | lineage4.8 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR6197035 | Sensitive | lineage4.7 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR502507 | Sensitive | lineage5.1.4 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | ERR2228900 | Other | lineage4.8 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR2229147 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR6359070 | Sensitive | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR4817069 | RR-TB | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173770 | Other | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR1181214 | Other | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1238559 | Other | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1173719 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR867575 | Other | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR2228838 | Other | lineage4.8 | None | ERR1063855 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR4769436 | Other | La1.3 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR4820030 | Other | lineage4.9 | None | SRR11342634 | MDR-TB | lineage4.8 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769493 | Other | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR6046737 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1173281 | Other | lineage3 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140716 | Other | lineage3 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR4822261 | RR-TB | lineage2.2.1 | None |
|---|
