Rv0668 - c.165T>C
Drug resistance types
50 Sensitive
89 RR-TB
34 HR-TB
54 MDR-TB
29 Pre-XDR-TB
0 XDR-TB
99 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3.1.2.1 | 2 |
| lineage3 | 24 |
| lineage6 | 1 |
| lineage1 | 1 |
| lineage4.9 | 114 |
| lineage4.8 | 29 |
| lineage4.4.1.1 | 3 |
| lineage4.1.2.1 | 11 |
| lineage4.1.1.3.1 | 3 |
| lineage4.3.3 | 6 |
| lineage4.8.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.4.2.1 | 8 |
| lineage2.2.1 | 38 |
| lineage4 | 20 |
| lineage4.3.4.2 | 2 |
| lineage3.1.1 | 3 |
| lineage1.1.3.1 | 3 |
| 10 | |
| La3 | 1 |
| lineage4.1.1 | 2 |
| lineage4.1.1.3 | 4 |
| lineage3.1.2 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.3.4.1 | 1 |
| lineage5.1.4 | 1 |
| lineage4.3 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.7 | 2 |
| lineage4.2.1 | 7 |
| lineage4.8.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| La1.8.1 | 3 |
| La1.7.X-unk4 | 1 |
| La1.2 | 1 |
| La1.3 | 2 |
| lineage4.9;La1.3 | 1 |
| lineage2.2.2 | 4 |
| lineage1.1.2 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.6.5 | 2 |
| lineage1.1.1.1 | 1 |
| lineage4.6.1.2 | 5 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.8;lineage4.3.3 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 1 |
| lineage2 | 1 |
| lineage4.2.2.1 | 2 |
| La1.4 | 1 |
| lineage4.4 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.2.2 | 1 |
| lineage5 | 1 |
| lineage3.1 | 1 |
| lineage4.5 | 2 |
| lineage4;lineage2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 355 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819017 | RR-TB | lineage3 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818149 | Other | lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818393 | RR-TB | lineage3 | None | ERR4818904 | Other | lineage4.8 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR2509886 | RR-TB | lineage3 | None | ERR4818536 | Other | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4819217 | Other | lineage1.2.2.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2513682 | Sensitive | lineage3 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4820266 | RR-TB | lineage3 | None | ERR4820284 | Other | lineage4.9 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4819933 | Other | lineage4.9 | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR4819910 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4820833 | HR-TB | None | ERR4820192 | Other | La3 | None | ERR4820030 | Other | lineage4.9 | None | ERR4820107 | RR-TB | None | ERR4821796 | Other | lineage4.1.1 | None | ERR4821811 | RR-TB | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821057 | HR-TB | lineage4 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR2660499 | Sensitive | lineage4.1.1.3 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4822104 | RR-TB | lineage3 | None | ERR4821550 | Other | lineage2.2.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045683 | Other | lineage3.1.2 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045263 | Sensitive | lineage4.9 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4972574 | MDR-TB | lineage4.1.2.1.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR502507 | Sensitive | lineage5.1.4 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR019855 | Other | lineage3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | ERR017781 | Other | lineage3 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7585400 | MDR-TB | lineage3 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR036207 | Other | lineage4.9 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3283008 | Other | lineage4.9 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3283053 | Other | lineage4.9 | None | ERR3439265 | Other | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4188213 | HR-TB | La1.8.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769436 | Other | La1.3 | None | ERR4769495 | Other | La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800222 | Sensitive | lineage1.1.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR6052110 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR6052085 | Pre-XDR-TB | lineage2.2.2 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6197035 | Other | lineage4.7 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR736837 | Other | lineage4.9 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736816 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR023487 | RR-TB | lineage2.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1173170 | Other | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173833 | Other | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181368 | Other | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR16149126 | MDR-TB | lineage4.2.2.1 | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR16278274 | Other | La1.4 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR4815310 | Other | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR176780 | Sensitive | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4814623 | Other | lineage4.8 | None | ERR4814681 | Other | lineage2.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4814709 | Other | lineage4.1.1 | None | ERR4812763 | Other | lineage2.2.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4815534 | Other | lineage4 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4815550 | Other | lineage4 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR2228965 | Other | lineage4.8 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816982 | Other | lineage4 | None | ERR4815944 | HR-TB | lineage4.1.2.1 | None | ERR4816967 | RR-TB | lineage5 | None | ERR4816991 | Sensitive | lineage4.9 | None | ERR4817069 | RR-TB | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR2229147 | Other | lineage4.8 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR2229233 | Sensitive | lineage4 | None | ERR4816417 | Other | lineage4.9 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR2229204 | Other | lineage4.8 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR4816756 | RR-TB | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR2229366 | Other | lineage4.8 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR4816852 | Other | lineage4.9 | None | ERR2229442 | HR-TB | lineage4.8 | None | ERR2229801 | Other | lineage4 | None | ERR2228813 | Other | lineage4.8 | None | ERR2228810 | RR-TB | lineage4 | None | SRR4033462 | Sensitive | lineage4.3.2.1 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR4817453 | Sensitive | lineage4 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR4815816 | Other | lineage4.5 | gb | ERR2228900 | RR-TB | lineage4.8 | None | ERR4817310 | Other | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None |
|---|
