TB-Profiler result

Run: SRR6046737
Summary

Run ID: SRR6046737

Sample name:

Date: 04-04-2023 12:22:25

Number of reads: 20605

Percentage reads mapped: 1.89

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.59 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.42 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.38 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6331 p.Glu364Asp missense_variant 1.0
gyrA 6352 c.-950C>G upstream_gene_variant 1.0
gyrA 6358 c.-944C>G upstream_gene_variant 1.0
gyrA 6361 c.-941G>A upstream_gene_variant 1.0
gyrA 6362 c.-940T>C upstream_gene_variant 1.0
gyrA 6367 c.-935C>G upstream_gene_variant 1.0
rpoB 760430 c.624T>C synonymous_variant 1.0
rpoB 760434 p.Val210Ile missense_variant 1.0
rpoB 760460 c.654G>T synonymous_variant 1.0
rpoB 760472 c.666C>T synonymous_variant 1.0
rpoB 760478 c.672C>T synonymous_variant 1.0
rpoB 760481 c.675G>T synonymous_variant 1.0
rpoB 760484 c.678A>G synonymous_variant 1.0
rpoB 760487 c.681G>C synonymous_variant 1.0
rpoB 761528 c.1722C>T synonymous_variant 1.0
rpoB 761531 c.1725C>G synonymous_variant 1.0
rpoB 761534 c.1728G>C synonymous_variant 1.0
rpoB 761537 c.1731C>G synonymous_variant 1.0
rpoB 761552 c.1746G>C synonymous_variant 1.0
rpoB 761558 c.1752C>T synonymous_variant 1.0
rpoB 761564 c.1758G>C synonymous_variant 1.0
rpoB 761573 c.1767C>G synonymous_variant 1.0
rpoB 761612 c.1806G>C synonymous_variant 1.0
rpoB 761615 c.1809A>G synonymous_variant 1.0
rpoB 761633 c.1827G>T synonymous_variant 1.0
rpoB 762173 p.Glu789Asp missense_variant 1.0
rpoB 762185 c.2379G>C synonymous_variant 1.0
rpoB 762188 c.2382C>T synonymous_variant 1.0
rpoB 762194 c.2388G>C synonymous_variant 1.0
rpoB 762200 c.2394C>T synonymous_variant 1.0
rpoB 762221 c.2415G>A synonymous_variant 1.0
rpoB 762239 c.2433G>A synonymous_variant 1.0
rpoB 762245 c.2439G>C synonymous_variant 1.0
rpoB 762248 c.2442G>C synonymous_variant 1.0
rpoB 762251 c.2445G>C synonymous_variant 1.0
rpoB 762254 c.2448T>C synonymous_variant 1.0
rpoB 762257 c.2451C>G synonymous_variant 1.0
rpoB 762266 c.2460T>C synonymous_variant 1.0
rpoB 762281 c.2475G>A synonymous_variant 1.0
rpoB 762284 c.2478G>T synonymous_variant 1.0
rpoB 762293 c.2487T>C synonymous_variant 1.0
rpoB 762296 c.2490G>C synonymous_variant 1.0
rpoB 762297 p.Leu831Met missense_variant 1.0
rpoB 762305 c.2499G>T synonymous_variant 1.0
rpoB 762314 c.2508C>T synonymous_variant 1.0
rpoB 762318 p.Ser838Thr missense_variant 1.0
rpoB 762329 c.2523G>C synonymous_variant 1.0
rpoB 762336 p.Ile844Val missense_variant 1.0
rpoB 762341 c.2535G>C synonymous_variant 1.0
rpoB 762878 p.Ile1024Met missense_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762884 c.-486G>A upstream_gene_variant 1.0
rpoC 762899 c.-471G>C upstream_gene_variant 1.0
rpoB 762905 p.Asp1033Glu missense_variant 1.0
rpoC 762917 c.-453C>G upstream_gene_variant 1.0
rpoC 762929 c.-441G>C upstream_gene_variant 1.0
rpoC 762938 c.-432G>C upstream_gene_variant 0.9
rpoC 762959 c.-411G>C upstream_gene_variant 0.94
rpoC 762962 c.-408C>T upstream_gene_variant 0.94
rpoC 762971 c.-399G>A upstream_gene_variant 1.0
rpoC 762983 c.-387C>T upstream_gene_variant 0.95
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>T upstream_gene_variant 1.0
rpoB 763002 c.3197dupA frameshift_variant 1.0
rpoB 763006 c.3201delC frameshift_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763040 c.-330C>G upstream_gene_variant 1.0
rpoC 763049 c.-321G>A upstream_gene_variant 1.0
rpoC 763052 c.-318G>C upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 1.0
rpoC 763064 c.-306G>A upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoB 763074 p.Thr1090Val missense_variant 1.0
rpoB 763077 p.Val1091Ile missense_variant 1.0
rpoC 763085 c.-285C>T upstream_gene_variant 1.0
rpoC 763100 c.-270G>A upstream_gene_variant 0.88
rpoC 763103 c.-267G>C upstream_gene_variant 0.87
rpoC 763109 c.-261C>G upstream_gene_variant 0.86
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
rpoB 763118 p.Glu1104Asp missense_variant 0.82
rpoC 763127 c.-243G>C upstream_gene_variant 0.75
rpoB 763130 p.Glu1108Asp missense_variant 0.75
rpoC 763136 c.-234C>A upstream_gene_variant 1.0
rpoC 763139 c.-231C>T upstream_gene_variant 0.75
rpoC 763142 c.-228C>G upstream_gene_variant 0.75
rpoC 763148 c.-222G>C upstream_gene_variant 1.0
rpoC 763158 c.-212C>T upstream_gene_variant 1.0
rpoC 763169 c.-201A>G upstream_gene_variant 1.0
rpoC 763456 c.87A>G synonymous_variant 1.0
rpoC 763462 c.93G>C synonymous_variant 1.0
rpoC 763468 c.99G>C synonymous_variant 1.0
rpoC 763483 c.114G>C synonymous_variant 1.0
rpoC 763486 c.117T>C synonymous_variant 1.0
rpoC 763489 c.120G>A synonymous_variant 1.0
rpoC 763492 c.123G>C synonymous_variant 1.0
rpoC 763516 c.147G>A synonymous_variant 1.0
rpoC 763517 p.Lys50Arg missense_variant 1.0
rpoC 763531 c.162G>A synonymous_variant 1.0
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763549 c.180C>T synonymous_variant 1.0
rpoC 763550 p.Tyr61Ala missense_variant 1.0
rpoC 763558 c.189C>T synonymous_variant 1.0
rpoC 763561 c.192G>A synonymous_variant 1.0
rpoC 763570 c.201G>A synonymous_variant 1.0
rpoC 763573 c.204G>C synonymous_variant 1.0
rpoC 763578 p.Phe70Tyr missense_variant 1.0
rpoC 763589 p.Ile74Val missense_variant 1.0
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763597 c.228G>A synonymous_variant 1.0
rpoC 763603 c.234C>T synonymous_variant 1.0
rpoC 763609 c.240C>G synonymous_variant 1.0
rpoC 763612 c.243G>A synonymous_variant 1.0
rpoC 763619 p.Arg84Lys missense_variant 1.0
rpoC 763622 p.Ala85Ser missense_variant 1.0
rpoC 763630 c.261G>C synonymous_variant 1.0
rpoC 763633 c.264T>C synonymous_variant 1.0
rpoC 763642 c.273G>C synonymous_variant 1.0
rpoC 763660 c.291T>G synonymous_variant 1.0
rpoC 763696 c.327T>C synonymous_variant 1.0
rpoC 763702 c.333C>G synonymous_variant 0.29
rpoC 763705 c.336G>A synonymous_variant 0.71
rpoC 763708 c.339G>C synonymous_variant 1.0
rpoC 763714 c.345G>C synonymous_variant 0.29
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763723 c.354G>C synonymous_variant 0.29
rpoC 763729 c.360G>C synonymous_variant 0.6
rpoC 763732 c.363C>G synonymous_variant 1.0
rpoC 763735 c.366G>C synonymous_variant 0.4
rpoC 763738 c.369G>A synonymous_variant 0.6
rpoC 763741 c.372C>T synonymous_variant 0.6
rpoC 763744 c.375G>C synonymous_variant 0.4
rpoC 763747 c.378G>A synonymous_variant 0.6
rpoC 763765 c.396T>C synonymous_variant 1.0
rpoC 763768 c.399C>G synonymous_variant 1.0
rpoC 763769 p.Tyr134Asn missense_variant 1.0
rpoC 763772 p.Val135Ile missense_variant 1.0
rpoC 763786 c.417C>G synonymous_variant 1.0
rpoC 764605 c.1236G>C synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764623 c.1254C>G synonymous_variant 1.0
rpoC 764626 c.1257C>T synonymous_variant 1.0
rpoC 764644 c.1275G>C synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764656 c.1287C>G synonymous_variant 1.0
rpoC 764659 c.1290C>T synonymous_variant 1.0
rpoC 764660 p.Val431Ile missense_variant 1.0
rpoC 764675 c.1306_1308delCTCinsTTG synonymous_variant 1.0
rpoC 764680 c.1311G>A synonymous_variant 1.0
rpoC 764701 c.1332C>G synonymous_variant 1.0
rpoC 764707 c.1338G>C synonymous_variant 1.0
rpoC 764714 c.1345C>T synonymous_variant 1.0
rpoC 764731 c.1362G>A synonymous_variant 1.0
rpoC 764737 c.1368G>C synonymous_variant 1.0
rpoC 764746 c.1377G>C synonymous_variant 1.0
rpoC 766288 c.2919C>T synonymous_variant 1.0
rpoC 766309 c.2940G>A synonymous_variant 1.0
rpoC 766312 c.2943T>C synonymous_variant 1.0
rpoC 766328 p.Lys987Gln missense_variant 1.0
rpoC 766331 p.Leu988Lys missense_variant 1.0
rpoC 766336 c.2967C>G synonymous_variant 1.0
rpoC 766345 c.2976T>A synonymous_variant 1.0
rpoC 766357 c.2988C>T synonymous_variant 1.0
rpoC 766363 c.2994G>T synonymous_variant 1.0
rpoC 766369 c.3000C>G synonymous_variant 1.0
rpoC 766378 c.3009C>T synonymous_variant 1.0
rpoC 766381 c.3012C>T synonymous_variant 1.0
rpoC 766384 c.3015A>G synonymous_variant 1.0
rpoC 766387 c.3018C>T synonymous_variant 1.0
rpoC 766390 c.3021C>T synonymous_variant 1.0
rpoC 766393 c.3024C>G synonymous_variant 1.0
rpoC 766408 c.3039C>T synonymous_variant 1.0
rpoC 766411 c.3042C>G synonymous_variant 1.0
rpoC 766420 c.3051G>A synonymous_variant 1.0
rpoC 766426 c.3057C>T synonymous_variant 1.0
rpoC 767035 c.3666G>C synonymous_variant 1.0
rpoC 767062 c.3693C>T synonymous_variant 1.0
rpoC 767065 c.3696G>C synonymous_variant 1.0
rpoC 767087 p.Cys1240Lys missense_variant 1.0
rpoC 767092 c.3723C>G synonymous_variant 1.0
rpoC 767093 c.3724_3725delAGinsTC synonymous_variant 1.0
rpoC 767106 p.Asn1246Ile missense_variant 1.0
rpoC 767119 c.3750A>G synonymous_variant 1.0
rpoC 767134 c.3765C>T synonymous_variant 1.0
rpoC 767140 c.3771G>C synonymous_variant 1.0
rpoC 767143 c.3774C>T synonymous_variant 1.0
rpsL 781766 c.207C>T synonymous_variant 1.0
rpsL 781793 c.234G>C synonymous_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 1.0
rpsL 781805 c.246G>T synonymous_variant 1.0
rpsL 781811 c.252C>T synonymous_variant 1.0
rpsL 781817 c.258G>T synonymous_variant 1.0
rplC 800672 c.-137G>T upstream_gene_variant 1.0
rplC 800693 c.-116A>G upstream_gene_variant 1.0
rplC 800702 c.-107G>C upstream_gene_variant 0.83
rplC 800703 c.-106T>C upstream_gene_variant 1.0
rplC 800720 c.-89T>C upstream_gene_variant 1.0
rplC 800726 c.-83G>C upstream_gene_variant 0.8
rplC 800744 c.-65G>A upstream_gene_variant 1.0
rplC 800747 c.-62C>T upstream_gene_variant 1.0
rplC 800768 c.-41C>A upstream_gene_variant 1.0
rplC 800780 c.-29C>G upstream_gene_variant 1.0
rplC 800786 c.-23C>T upstream_gene_variant 1.0
fbiC 1304784 c.1854T>C synonymous_variant 1.0
fbiC 1304787 c.1857T>C synonymous_variant 1.0
fbiC 1304790 c.1860C>G synonymous_variant 1.0
fbiC 1304808 c.1878C>G synonymous_variant 1.0
fbiC 1304811 c.1881C>G synonymous_variant 1.0
fbiC 1304817 c.1887T>C synonymous_variant 1.0
fbiC 1304829 c.1899T>C synonymous_variant 1.0
fbiC 1304832 c.1902C>G synonymous_variant 1.0
fbiC 1304853 c.1923C>G synonymous_variant 1.0
fbiC 1304856 c.1926C>G synonymous_variant 1.0
fbiC 1304872 c.1942_1944delAGCinsTCG synonymous_variant 1.0
fbiC 1304877 c.1947T>C synonymous_variant 1.0
fbiC 1304878 c.1948_1950delCGCinsAGG synonymous_variant 1.0
fbiC 1304893 p.Gly655Ser missense_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 1.0
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 1.0
rrs 1471928 n.83T>G non_coding_transcript_exon_variant 1.0
rrs 1471936 n.91A>G non_coding_transcript_exon_variant 1.0
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 1.0
rrs 1471980 n.135G>T non_coding_transcript_exon_variant 1.0
rrs 1471981 n.136C>T non_coding_transcript_exon_variant 1.0
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 1.0
rrs 1472017 n.172C>T non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.67
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.67
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.4
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472426 n.581T>C non_coding_transcript_exon_variant 1.0
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472436 n.591G>A non_coding_transcript_exon_variant 1.0
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 1.0
rrs 1472446 n.601T>G non_coding_transcript_exon_variant 1.0
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 1.0
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 1.0
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 1.0
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 1.0
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472466 n.621C>T non_coding_transcript_exon_variant 1.0
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 1.0
rrs 1472468 n.623T>G non_coding_transcript_exon_variant 1.0
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 1.0
rrs 1472474 n.629C>T non_coding_transcript_exon_variant 1.0
rrs 1472484 n.639_640insT non_coding_transcript_exon_variant 1.0
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 1.0
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.67
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.25
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.4
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.31
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.56
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.28
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.63
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.4
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.41
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.67
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.74
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.3
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.35
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.28
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.68
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.57
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.5
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.5
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.5
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472884 n.1039G>T non_coding_transcript_exon_variant 0.5
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.75
rrs 1472955 n.1111T>C non_coding_transcript_exon_variant 0.33
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.5
rrs 1472974 n.1129A>T non_coding_transcript_exon_variant 0.6
rrs 1472977 n.1133dupT non_coding_transcript_exon_variant 0.6
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.56
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.92
rrs 1472996 n.1151T>C non_coding_transcript_exon_variant 0.29
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.71
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.8
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.36
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 1.0
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.6
rrs 1473089 n.1244A>C non_coding_transcript_exon_variant 0.4
rrs 1473091 n.1246G>A non_coding_transcript_exon_variant 1.0
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 1.0
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473112 n.1267A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 1.0
rrs 1473120 n.1275C>T non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473122 n.1277T>G non_coding_transcript_exon_variant 1.0
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 1.0
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 1.0
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.71
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.71
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.62
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.42
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.42
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473292 n.1447G>T non_coding_transcript_exon_variant 0.62
rrs 1473293 n.1448G>T non_coding_transcript_exon_variant 0.62
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.38
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.67
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 1.0
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474487 n.830G>T non_coding_transcript_exon_variant 0.75
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.75
rrl 1474496 n.839C>T non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 1.0
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 1.0
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.75
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 0.75
rrl 1474527 n.870T>G non_coding_transcript_exon_variant 0.75
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474542 n.885A>C non_coding_transcript_exon_variant 0.75
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.83
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.38
rrl 1474615 n.958A>G non_coding_transcript_exon_variant 0.33
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.43
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.22
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.43
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.43
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474798 n.1141C>T non_coding_transcript_exon_variant 0.6
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.58
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.58
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.83
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.75
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.58
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.79
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.64
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.78
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 0.78
rrl 1474928 n.1271C>T non_coding_transcript_exon_variant 0.71
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.71
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.71
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 0.75
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 0.75
rrl 1475707 n.2050T>G non_coding_transcript_exon_variant 0.6
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.43
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.43
rrl 1475735 n.2078T>C non_coding_transcript_exon_variant 0.33
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.5
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.43
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.57
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 1.0
rrl 1475768 n.2111G>T non_coding_transcript_exon_variant 0.43
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.86
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.57
rrl 1475783 n.2126T>C non_coding_transcript_exon_variant 0.38
rrl 1475791 n.2134A>G non_coding_transcript_exon_variant 0.3
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.36
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.64
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.64
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.53
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.53
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.53
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.71
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.47
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.38
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.53
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.41
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.38
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.4
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.29
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 1.0
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.5
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.5
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.5
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 1.0
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.5
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.5
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.5
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.5
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476060 n.2403T>G non_coding_transcript_exon_variant 0.5
rrl 1476085 n.2428G>A non_coding_transcript_exon_variant 1.0
rrl 1476091 n.2434_2435insC non_coding_transcript_exon_variant 1.0
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 1.0
rrl 1476100 n.2443A>C non_coding_transcript_exon_variant 1.0
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 1.0
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 1.0
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.67
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.33
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.5
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.7
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.45
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.45
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.3
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.75
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.43
rrl 1476187 n.2530T>C non_coding_transcript_exon_variant 0.3
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.62
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.38
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.33
rrl 1476214 n.2557G>C non_coding_transcript_exon_variant 0.5
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.67
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.6
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.4
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.5
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.38
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.5
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.57
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.5
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.29
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.5
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.71
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.75
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.75
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.75
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.6
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.4
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.4
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.6
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.6
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.6
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.62
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.78
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.72
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.72
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.71
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.71
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.7
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.7
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.68
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.89
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.88
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.71
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.5
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.36
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 1.0
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.5
rrl 1476572 n.2915G>C non_coding_transcript_exon_variant 0.29
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.6
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 1.0
rrl 1476597 n.2940G>T non_coding_transcript_exon_variant 0.67
rpsA 1834189 c.648G>C synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834213 c.672G>A synonymous_variant 1.0
rpsA 1834225 c.684C>T synonymous_variant 1.0
rpsA 1834231 c.690T>C synonymous_variant 1.0
rpsA 1834234 c.693G>A synonymous_variant 1.0
rpsA 1834246 c.705G>T synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834294 c.753G>C synonymous_variant 1.0
rpsA 1834298 p.Gln253Ala missense_variant 1.0
rpsA 1834306 c.765T>C synonymous_variant 1.0
rpsA 1834327 c.786G>C synonymous_variant 1.0
rpsA 1834333 c.792C>T synonymous_variant 1.0
rpsA 1834345 c.804C>T synonymous_variant 1.0
rpsA 1834348 c.807T>C synonymous_variant 1.0
rpsA 1834351 c.810G>A synonymous_variant 1.0
rpsA 1834354 c.813G>C synonymous_variant 1.0
rpsA 1834357 c.816T>C synonymous_variant 1.0
rpsA 1834360 c.819G>C synonymous_variant 1.0
rpsA 1834361 c.820T>C synonymous_variant 1.0
rpsA 1834366 c.825A>G synonymous_variant 1.0
rpsA 1834375 c.834G>C synonymous_variant 1.0
rpsA 1834378 c.837T>C synonymous_variant 1.0
rpsA 1834387 c.846C>T synonymous_variant 1.0
rpsA 1834451 c.910T>C synonymous_variant 1.0
rpsA 1834468 c.927A>G synonymous_variant 1.0
rpsA 1834480 c.939C>T synonymous_variant 1.0
rpsA 1834483 c.942G>A synonymous_variant 1.0
rpsA 1834498 c.957C>T synonymous_variant 1.0
rpsA 1834504 c.963G>C synonymous_variant 1.0
embC 4241567 p.Ile569Val missense_variant 1.0
embC 4241572 c.1710C>G synonymous_variant 1.0
embC 4241578 c.1716G>C synonymous_variant 1.0
embC 4241584 c.1722T>C synonymous_variant 1.0
embC 4241587 c.1725C>G synonymous_variant 1.0
embC 4241591 p.Leu577Val missense_variant 1.0
embC 4241611 c.1749G>C synonymous_variant 1.0
embC 4241614 c.1752A>C synonymous_variant 1.0
embC 4241626 c.1764T>C synonymous_variant 1.0