SRR7069784
|
Other
|
lineage1.2.2.2
|
None
|
SRR5341288
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR18909918
|
Other
|
lineage2.2.1.1
|
None
|
SRR7070388
|
Other
|
lineage3.1.2
|
None
|
ERR6198389
|
Other
|
La1.2
|
None
|
SRR7645973
|
Other
|
lineage4.3.4.1
|
None
|
SRR1183410
|
Other
|
lineage4.9
|
None
|
SRR7755642
|
MDR-TB
|
lineage4.2.1
|
None
|
SAMN02360580
|
HR-TB
|
lineage2.2.1
|
None
|
SRR18003038
|
Other
|
lineage2.2.1
|
None
|
ERR867575
|
Other
|
lineage4.9
|
None
|
SRR22048474
|
RR-TB
|
lineage4.8
|
None
|
SRR22424905
|
RR-TB
|
lineage4.9
|
None
|
SRR7070469
|
Other
|
lineage4.3.1.1
|
None
|
SRR11342656
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069946
|
Other
|
lineage4.8
|
None
|
SRR7070369
|
Other
|
lineage1.2.2.2
|
None
|
SRR1182992
|
Other
|
lineage4.9
|
None
|
SRR1180774
|
Other
|
lineage4.9
|
None
|
ERR5917972
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR19303817
|
Other
|
lineage2.2.1
|
None
|
ERR4815550
|
Other
|
lineage2.2;lineage4.9
|
None
|
SRR21658550
|
Other
|
lineage1.1.1
|
None
|
SRR7069013
|
Other
|
lineage4.8
|
None
|
ERR867574
|
Other
|
lineage4.9
|
None
|
SRR6045613
|
Other
|
lineage3.1.3
|
None
|
ERR4817434
|
Other
|
lineage3
|
None
|
ERR978761_ERR978762_ERR978760
|
RR-TB
|
lineage4.8
|
None
|
SRR7069687
|
Other
|
lineage4.1.1.3.1
|
None
|
SRR6982066
|
Other
|
lineage4.3.2.1
|
None
|
SRR16156775
|
Other
|
lineage4.9
|
None
|
ERR867567
|
RR-TB
|
lineage3
|
None
|
ERR6201802
|
Other
|
La1.2
|
None
|
ERR4819191
|
Other
|
lineage4.6.2.2
|
None
|
SRR11342691
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828962
|
Sensitive
|
lineage4.1.4
|
it
|
SRR6045805
|
Other
|
lineage4.3.1.1
|
None
|
SRR5818647
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR3675252
|
Other
|
lineage1.1.2
|
None
|
ERR4769433
|
RR-TB
|
lineage4.9
|
None
|
SRR3675230
|
Other
|
lineage3;lineage4
|
None
|
SRR11342651
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR1180686
|
Other
|
lineage4.9
|
None
|
SRR1183678
|
Other
|
lineage4.9
|
None
|
ERR3559276
|
HR-TB
|
lineage4.2.2
|
None
|
ERR4814507
|
Other
|
lineage2.2.1
|
None
|
ERR4819533
|
Other
|
lineage1.1.2
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
SRR6045516
|
Other
|
lineage3.1.1
|
None
|
ERR3797063
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR4820723
|
Other
|
lineage4.4.1.1
|
None
|
ERR4819876
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR1183067
|
Other
|
lineage4.9
|
None
|
ERR911930
|
Other
|
lineage4.8
|
None
|
ERR2512423
|
Other
|
lineage4.1.1.3
|
None
|
ERR4819096
|
Other
|
lineage4.4.1.1
|
None
|
SAMN02360595
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10796572
|
Other
|
lineage4.3.4.1;lineage4.9
|
None
|
SRR1183315
|
Other
|
lineage4.9
|
None
|
SRR19303876
|
Other
|
lineage4.7
|
None
|
SRR11349208
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1208542
|
Other
|
lineage4.9
|
None
|
SRR11342653
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003007
|
MDR-TB
|
lineage4.5
|
None
|
ERR10796595
|
Other
|
lineage4.9
|
None
|
SRR7070329
|
Other
|
lineage3
|
None
|
ERR9896153
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR987704
|
HR-TB
|
lineage4.6.1.2
|
None
|
ERR4812763
|
Other
|
lineage2.2.1
|
None
|
ERR4816831
|
Other
|
lineage4.1.2.1
|
None
|
ERR176781
|
Sensitive
|
lineage1.1.3.2
|
None
|
SRR18002967
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7069669
|
Other
|
lineage3.1.1
|
None
|
ERR10796596
|
Other
|
lineage4.9
|
None
|
SRR5818612
|
Other
|
lineage4.2.2.2
|
None
|
SRR1183197
|
Other
|
lineage4.9
|
None
|
SRR7069030
|
Other
|
lineage3
|
None
|
ERR4814681
|
Other
|
lineage2.2.1
|
None
|
SRR2010514
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6397575
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
SRR7070176
|
Other
|
lineage3
|
None
|
SRR7070266
|
Other
|
lineage1.1.2
|
None
|
SRR7069137
|
Other
|
lineage4.8
|
None
|
SRR20969475
|
Other
|
lineage1.2.1.2
|
None
|
ERR9117788
|
Other
|
lineage3
|
None
|
SRR7070419
|
Other
|
lineage3
|
None
|
SRR5007193
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
ERR2229541
|
Other
|
lineage4.8
|
None
|
SRR7755652
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR10796583
|
Other
|
lineage2.2.1
|
None
|
SRR7131053
|
Other
|
lineage2.2.1
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR036215
|
Other
|
lineage4.8
|
None
|
SRR18002881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2229366
|
Other
|
lineage4.8
|
None
|
SRR1202412
|
Sensitive
|
lineage4.9
|
None
|
SRR6046064
|
Other
|
lineage3
|
gb
|
ERR4817189
|
Other
|
lineage4.7
|
None
|
ERR4819528
|
RR-TB
|
lineage3
|
None
|
ERR5311077
|
Other
|
La1.8.1
|
None
|
SRR19303815
|
Other
|
lineage4.8
|
None
|
ERR4818988
|
Other
|
lineage1.2.2
|
None
|
ERR4769479
|
Other
|
La1.3
|
None
|
ERR4769493
|
Other
|
lineage4.9
|
None
|
ERR2446154
|
Sensitive
|
lineage4.4.1.1
|
nl
|
ERR2600422
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1183193
|
Other
|
lineage4.9
|
None
|
ERR4821616
|
Other
|
lineage1.1.3.1
|
None
|
ERR2228859
|
Other
|
lineage4.8
|
None
|
ERR2228899
|
Other
|
lineage4.8
|
None
|
SRR6046250
|
Other
|
lineage4.9
|
None
|
SRR2024953
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR11342685
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR1034692
|
Other
|
lineage1.2.1.2.1
|
None
|
ERR2228900
|
Other
|
lineage4.8
|
None
|
ERR867522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5007168
|
Other
|
lineage4.8.2;lineage4.9
|
None
|
SRR6397771
|
Other
|
lineage1.1.1.1
|
None
|
ERR4818831
|
Other
|
lineage3
|
None
|
SRR7236330
|
Other
|
La1.8.1
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR7069648
|
Other
|
lineage4.6.2.2
|
None
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR4819640
|
RR-TB
|
lineage4.6.2.2
|
None
|
SRR6832644
|
Other
|
lineage4.3.3;lineage4.9
|
None
|
SRR1180617
|
Other
|
lineage4.9
|
None
|
SRR1048861
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6045295
|
Other
|
lineage4.7
|
None
|
ERR9901813
|
Sensitive
|
lineage4.1.4
|
None
|
SRR1182912
|
Other
|
lineage4.9
|
None
|
SRR7070080
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR036194
|
Other
|
lineage4.6.1.2
|
None
|
SRR5341429
|
HR-TB
|
lineage3.1.2.1
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR1665404
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4821372
|
Other
|
lineage4.1.2.1
|
None
|
SRR1196582
|
Other
|
lineage4.9
|
None
|
SRR6982400
|
Other
|
lineage2.2.1
|
None
|
ERR867526
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR867538
|
Other
|
lineage4.2.2.2
|
None
|
SRR7851312
|
Other
|
La1.2
|
None
|
ERR4814763
|
Other
|
lineage2.2.1
|
None
|
SRR1183213
|
Other
|
lineage4.9
|
None
|
ERR4818050
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR10796559
|
Other
|
lineage4.9
|
None
|
ERR751317
|
Sensitive
|
lineage4.9
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
ERR867555
|
Other
|
lineage3
|
None
|
SRR7070446
|
Other
|
lineage3
|
None
|
ERR4627392
|
Other
|
La1.8.1
|
None
|
ERR4818272
|
Other
|
lineage4.3.2
|
None
|
ERR4820270
|
MDR-TB
|
lineage4.8
|
gb
|
ERR4820959
|
Other
|
lineage4.1.2.1
|
None
|
ERR4829326
|
Sensitive
|
lineage4.7
|
None
|
SRR11349194
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3675225
|
Other
|
lineage2.2.1.2
|
None
|
ERR4819423
|
Other
|
lineage4.6.2.2
|
None
|
ERR4820736
|
Sensitive
|
lineage4.1.2.1
|
gb
|
SRR1202706
|
Other
|
lineage4.9
|
None
|
SRR7131196
|
Other
|
lineage4.8
|
None
|
SRR7131152
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153833
|
Other
|
lineage2.2.1
|
None
|
SRR6045603
|
Other
|
lineage4.1.1.3
|
None
|
SRR1202714
|
Sensitive
|
lineage4.9
|
None
|
ERR2446509
|
Other
|
lineage3
|
nl
|
SRR7070535
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR7070521
|
Other
|
lineage4.2.1.1
|
None
|
SRR19303796
|
Other
|
lineage4.3.3
|
None
|
SRR7645927
|
Other
|
lineage4.8
|
None
|
SRR10315579
|
Other
|
lineage2.2.1.1
|
None
|
SRR7069725
|
Sensitive
|
lineage4.1.2.1
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
SRR18002984
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2229198
|
Sensitive
|
lineage4.8
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR18002937
|
Other
|
lineage2.2.1
|
None
|
SRR11349184
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2229540
|
Sensitive
|
lineage4.8
|
None
|
ERR270777
|
HR-TB
|
lineage4.1.2
|
None
|
SRR1180743
|
Other
|
lineage4.9
|
None
|
SRR1182908
|
Other
|
lineage4.9
|
None
|
SRR11342686
|
MDR-TB
|
lineage4.8
|
None
|
SRR7645827
|
Other
|
lineage4.2.1.1
|
None
|
SRR10315696
|
Sensitive
|
lineage4.3.2.1
|
None
|
ERR978748
|
Other
|
lineage4.8
|
None
|
SRR1173706
|
Other
|
lineage4.9
|
None
|
SRR11349164
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6046521
|
Other
|
lineage4.4.1.1
|
None
|
SRR1181223
|
Other
|
lineage4.9
|
None
|
SRR1208763
|
Other
|
lineage4.9
|
None
|
SRR1208891
|
Other
|
lineage4.9
|
None
|
SRR1208965
|
Other
|
lineage4.9
|
None
|
SRR19303949
|
Other
|
lineage4.3.3
|
None
|
SRR7131030
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796615
|
Other
|
lineage4.3.3;lineage4.9
|
None
|
SRR3675389
|
Other
|
lineage4.9
|
None
|
ERR867554
|
Other
|
lineage4.3.4.1
|
None
|
SRR6152980
|
HR-TB
|
lineage4.8
|
ca
|
SRR7070293
|
Other
|
lineage4.8
|
None
|
SRR6046020
|
Other
|
lineage3
|
None
|
SRR6046447
|
Sensitive
|
lineage4.8
|
gb
|
SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR19304104
|
Other
|
lineage4.8
|
None
|
SRR5341460
|
Other
|
lineage3
|
None
|
SRR6397396
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
SRR3675245
|
Other
|
lineage4.1.2.1
|
None
|
ERR978693
|
Other
|
lineage4.8
|
None
|
ERR4769495
|
Other
|
La1.3
|
None
|
SRR7069128
|
Other
|
lineage1.2.1.2.1
|
None
|
SRR7645901
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4972567
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR11349209
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR7069193
|
Other
|
lineage4.3.1.1
|
None
|
ERR2027207
|
Sensitive
|
lineage3
|
None
|
ERR2228890
|
Other
|
lineage4.8;lineage4.9
|
None
|
ERR2229204
|
Other
|
lineage4.8
|
None
|
ERR3559283
|
HR-TB
|
lineage4.2.2
|
None
|
SRR6153166
|
Other
|
lineage1.2.1.2.1
|
ca
|
SRR6397770
|
Other
|
lineage4.7
|
None
|
SRR1183616
|
Other
|
lineage4.9
|
None
|
ERR4814841
|
Other
|
lineage4.1
|
None
|
SRR7070230
|
Other
|
lineage2.2.1.2
|
None
|
SRR11342689
|
Other
|
lineage4.1.2.1
|
None
|
ERR6201800
|
Other
|
La1.2
|
None
|
SRR1182878
|
Other
|
lineage4.9
|
None
|
SRR6044841
|
Other
|
lineage4.9
|
None
|
SRR6046246
|
Other
|
lineage3
|
None
|
ERR9117725
|
Other
|
lineage4.1.1.1
|
None
|
ERR978760
|
RR-TB
|
lineage4.8
|
None
|
SRR11342636
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18003046
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045125
|
Other
|
lineage1.1.2
|
None
|
SRR5818586
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR3559275
|
HR-TB
|
lineage4.2.2
|
None
|
SRR18002985
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4820829
|
Other
|
lineage4.8
|
None
|
SRR18003035
|
Other
|
La1.8.1
|
None
|
SRR1208423
|
Sensitive
|
lineage4.9
|
None
|
SRR12062542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18003012
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3276144
|
Other
|
lineage3
|
nl
|
SRR6045496
|
Other
|
lineage6.1.3
|
None
|
ERR7801178
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR6832659
|
Other
|
lineage4.2.1
|
None
|
SRR6046359
|
Other
|
lineage4.7
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR6046668
|
Sensitive
|
lineage1.1.2
|
gb
|
SRR7131145
|
Other
|
lineage4.1.2.1
|
None
|
SRR11342643
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR7131185
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796558
|
Sensitive
|
lineage4.3.4.1;lineage4.9
|
None
|
SRR6045928
|
Other
|
lineage4.9
|
None
|
ERR10796582
|
Other
|
lineage4.3.4.1
|
None
|
SRR1183018
|
Other
|
lineage4.9
|
None
|
ERR2514430
|
Other
|
lineage3.1.2;lineage4.1.1.3.1
|
None
|
ERR10796593
|
Other
|
lineage4.3
|
None
|
SRR11342698
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR3276170
|
Other
|
lineage4.1.2.1
|
nl
|
ERR11465626
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR18213726
|
Other
|
lineage3
|
None
|
ERR4820193
|
Other
|
lineage3
|
None
|
ERR4819641
|
Other
|
lineage4.6.2.2
|
None
|
ERR4820188
|
Other
|
lineage3
|
gb
|
SRR11349203
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR779680
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR1180647
|
Other
|
lineage4.9
|
None
|
SRR6046848
|
Other
|
lineage4.6.5
|
None
|
ERR978747
|
Other
|
lineage4.8
|
None
|
ERR502507
|
Sensitive
|
lineage5.1.4
|
None
|
SRR6045705
|
Other
|
lineage4.9
|
None
|
ERR10796631
|
Other
|
lineage4.3.4.2;lineage4.9
|
None
|
SRR11349195
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9117747
|
Sensitive
|
lineage4.8
|
None
|
SRR8073606
|
Other
|
La1.8.1
|
None
|
ERR4820410
|
RR-TB
|
lineage3.1.1
|
None
|
SRR6044904
|
Other
|
lineage3
|
None
|
ERR3283043
|
Other
|
lineage4.9
|
None
|
SRR1183080
|
Other
|
lineage4.9
|
None
|
SRR1183341
|
Other
|
lineage4.9
|
None
|
SRR7070482
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796568
|
Other
|
lineage4.9
|
None
|
SRR1180024
|
Other
|
lineage4.9
|
None
|
ERR4819982
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1183091
|
Other
|
lineage4.9
|
None
|
SRR11349153
|
RR-TB
|
lineage4.1.1.1
|
None
|
SRR6397389
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR18002999
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1202656
|
Sensitive
|
lineage4.9
|
None
|
ERR11465427
|
Sensitive
|
lineage4.1.1.3
|
None
|
SAMEA3501015
|
Other
|
lineage4.8
|
None
|
SRR3675231
|
MDR-TB
|
lineage4.9;lineage7
|
None
|
SRR10315707
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
SRR6044983
|
Other
|
lineage3.1.1
|
None
|
ERR9907760
|
Pre-XDR-TB
|
lineage4.3
|
None
|
SRR6152910
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR9117740
|
Other
|
lineage3.1.1
|
None
|
SRR1183531
|
Other
|
lineage4.9
|
None
|
ERR4769423
|
Other
|
La1.3
|
None
|
ERR867569
|
Other
|
lineage4.9
|
None
|
ERR10796581
|
Other
|
lineage4.1.2
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR2027257
|
Other
|
lineage4.1.2.1
|
None
|
SAMN02360556
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4819579
|
HR-TB
|
lineage4.3.3
|
None
|
SRR1181161
|
Other
|
lineage4.9
|
None
|
SRR1209000
|
Other
|
lineage4.9
|
None
|
ERR4863405
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
ERR4819002
|
HR-TB
|
lineage4.8
|
None
|
SRR18002963
|
Other
|
lineage2.2.1
|
None
|
ERR10796620
|
Other
|
lineage4.1.1.1
|
None
|
SRR6045267
|
RR-TB
|
lineage4.8
|
None
|
SRR5007169
|
RR-TB
|
lineage4.8.2
|
None
|
ERR108125
|
RR-TB
|
lineage4.9
|
None
|
SRR7755645
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6152685
|
Other
|
lineage2.1
|
ca
|
SRR7131121
|
Other
|
lineage4.3.3
|
None
|
SRR7131147
|
Other
|
lineage4.1.2.1
|
None
|
ERR6197030
|
Sensitive
|
lineage4.9
|
None
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR2228838
|
Other
|
lineage4.8
|
None
|
ERR2179662
|
Sensitive
|
lineage4.5
|
cn
|
SRR7755688
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4821962
|
Other
|
lineage4.1.1.3
|
gb
|
ERR4816692
|
Other
|
lineage4.1.2.1
|
None
|
ERR4818726
|
Other
|
lineage4.1.2.1
|
None
|
ERR4816531
|
Other
|
lineage4.1.2
|
None
|
ERR176771
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR9787033
|
Sensitive
|
lineage6.1.2
|
None
|
ERR978762
|
Other
|
lineage4.8
|
None
|
SRR18002976
|
Other
|
lineage2.2.1
|
None
|
ERR176470
|
Other
|
lineage4.3.4.1
|
mw
|
ERR2179850
|
Sensitive
|
lineage4
|
None
|
ERR6397161
|
Other
|
lineage4.2.2.2
|
None
|
SRR1173384
|
Other
|
lineage4.9
|
None
|
SRR19304094
|
Other
|
lineage6.1.2
|
None
|
SRR16627752
|
RR-TB
|
lineage4.4
|
None
|
SRR5007186
|
Sensitive
|
lineage4.6
|
None
|
SRR1183327
|
Other
|
lineage4.9
|
None
|
ERR10796563
|
Other
|
lineage4.3.3
|
None
|
ERR4818126
|
Other
|
lineage1.2.2
|
None
|
SRR15276982
|
XDR-TB
|
lineage3
|
None
|
ERR2513904
|
Other
|
lineage3.1.2.2
|
gb
|
SRR1180111
|
Other
|
lineage4.9
|
None
|
SRR18002954
|
Other
|
lineage2.2.1
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4821704
|
Other
|
lineage4.3.3
|
None
|
ERR4816758
|
Other
|
lineage4.8
|
gb
|
ERR4816852
|
Other
|
lineage4.9
|
None
|
ERR4816967
|
Other
|
lineage5
|
None
|
SRR1182880
|
Other
|
lineage4.9
|
None
|
ERR4821811
|
Sensitive
|
lineage4.9
|
None
|
SRR6982141
|
Other
|
lineage4.3.3
|
None
|
ERR4769518
|
Sensitive
|
lineage4.9
|
None
|
ERR4821769
|
Other
|
lineage4.1.2.1
|
None
|
ERR4818570
|
Other
|
lineage4.3.3
|
None
|
ERR2179816
|
Sensitive
|
lineage4
|
None
|
SRR3675582
|
Other
|
lineage4.9
|
None
|
ERR4821477
|
Other
|
lineage4.8
|
None
|
ERR7801177
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR7070479
|
Other
|
lineage4.1.2
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
SRR6046484
|
Other
|
lineage1.2.2.2
|
None
|
SRR11342688
|
Other
|
lineage4.2.2.2
|
None
|
SRR1181193
|
Other
|
lineage4.9
|
None
|
SRR1182885
|
Other
|
lineage4.9
|
None
|
SRR18003047
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR867572
|
Other
|
lineage4.9
|
None
|
SAMEA3450033
|
Other
|
lineage4.8
|
None
|
ERR867523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173025
|
Other
|
lineage4.9
|
None
|
ERR10796617
|
Other
|
lineage4.3.4.1
|
None
|
SRR7069797
|
Sensitive
|
lineage3
|
None
|
SRR3675509
|
Other
|
lineage4.9
|
None
|
ERR473298
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR9117805
|
Other
|
lineage4.3.2
|
None
|
SRR1208944
|
Other
|
lineage4.9
|
None
|
SRR6397815
|
Other
|
lineage4.4.1.1
|
None
|
SRR1183322
|
Other
|
lineage4.9
|
None
|
ERR4817194
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR5341267
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4815171
|
HR-TB
|
lineage1.1.2
|
None
|
ERR11466014
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR171142
|
Other
|
lineage3.1.1;lineage4.9
|
None
|
SRR1183224
|
Other
|
lineage4.9
|
None
|
SRR7069957
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR1063847
|
Sensitive
|
lineage3.1.1
|
None
|
SRR7131004
|
Other
|
lineage4.6.2.2
|
None
|
ERR4816417
|
Other
|
lineage4.9
|
None
|
SRR7645895
|
Other
|
lineage2.2.1
|
None
|
ERR405217
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1181377
|
Other
|
lineage4.9
|
None
|
ERR6140667
|
Other
|
La1.8.2
|
None
|
SRR1183175
|
Other
|
lineage4.9
|
None
|
SRR1180192
|
Other
|
lineage4.9
|
None
|
ERR10796580
|
Other
|
lineage4
|
None
|
SRR1181299
|
Other
|
lineage4.9
|
None
|
SRR7069319
|
Other
|
lineage4.5
|
None
|
ERR2229358
|
Other
|
lineage4.8
|
None
|
SRR1183268
|
Other
|
lineage4.9
|
None
|
ERR4814976
|
Other
|
lineage4.9
|
None
|
SRR7645834
|
Other
|
lineage2.2.1
|
None
|
ERR4819622
|
Other
|
lineage4.1.2.1
|
None
|
SRR6397548
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
SRR7535047
|
RR-TB
|
lineage4.6.1.1
|
None
|
ERR6197040
|
Other
|
lineage4.9
|
None
|
ERR2027230
|
Other
|
lineage4.2.2.2
|
None
|
ERR2027255
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR3468488
|
Other
|
La1.8.1
|
None
|
SRR1208798
|
Other
|
lineage4.9
|
None
|
ERR6336784
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR14334194
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11342638
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6397642
|
Other
|
lineage4.4.1.1
|
None
|
ERR4817055
|
Other
|
lineage4.1.2.1
|
None
|
ERR126597
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
ERR4817554
|
Other
|
lineage1.1.1
|
None
|
SRR1181392
|
Other
|
lineage4.9
|
None
|
ERR4817584
|
Other
|
lineage3;lineage4.9
|
None
|
SRR1181580
|
Other
|
lineage4.9
|
None
|
SRR6045158
|
Other
|
lineage4.9
|
None
|
SRR18002935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11342644
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11349201
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4820075
|
Other
|
lineage4.1.2.1
|
None
|
ERR3275615
|
Sensitive
|
lineage4.4.1.1
|
nl
|
ERR10796578
|
Other
|
lineage2.2.1
|
None
|
SRR18002964
|
Other
|
lineage2.2.1
|
None
|
SRR18002994
|
MDR-TB
|
lineage4.2.2
|
None
|
SRR7070154
|
Other
|
lineage4.4.1.1
|
None
|
ERR10796553
|
Other
|
lineage4.9
|
None
|
SRR18003032
|
Other
|
lineage2.2.1
|
None
|
SRR6152886
|
HR-TB
|
lineage3
|
None
|
ERR3797065
|
RR-TB
|
lineage4.9
|
None
|
ERR8665619
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR779913
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SRR18003033
|
Other
|
lineage2.2.1
|
None
|
SRR11342676
|
HR-TB
|
lineage4.6.2.2
|
None
|
SRR18003052
|
Other
|
lineage2.2.1.1
|
None
|
SAMN02585928
|
Other
|
lineage4.1.1.3
|
za
|
ERR1144989
|
Sensitive
|
lineage4.8
|
None
|
ERR4818128
|
Other
|
lineage4.1.2.1
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
SRR1184383
|
Other
|
lineage4.9
|
None
|
ERR502517
|
Other
|
lineage5.1.1
|
None
|
SRR1181303
|
Other
|
lineage4.9
|
None
|
ERR2514351
|
Sensitive
|
lineage3
|
gb
|
SRR6397975
|
Sensitive
|
lineage4.1.2.1
|
ca
|
ERR2229147
|
Other
|
lineage4.8
|
None
|
ERR867571
|
Other
|
lineage4.9
|
None
|
SRR1208657
|
Sensitive
|
lineage4.9
|
None
|
SRR6045289
|
Other
|
lineage2.2;lineage4.9
|
None
|
SRR9971032
|
RR-TB
|
lineage2.2.1
|
None
|
SRR7070153
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR1183282
|
Other
|
lineage4.9
|
None
|
ERR10796598
|
Other
|
lineage4.9
|
None
|
ERR752033
|
Sensitive
|
lineage2.2.1
|
th
|
ERR4821572
|
Sensitive
|
lineage2.1
|
None
|
ERR4815502
|
Other
|
lineage4.1
|
None
|
SRR6045621
|
Other
|
lineage4.1.1.3
|
None
|
SRR6046737
|
Other
|
lineage4.9
|
None
|
SRR7069959
|
Other
|
lineage4.5
|
None
|
SRR9971246
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR867525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867573
|
Other
|
lineage4.9
|
None
|
SRR7070165
|
Other
|
lineage4.1.2.1
|
None
|
ERR3276155
|
Other
|
lineage4.1.2.1
|
nl
|
ERR978754
|
RR-TB
|
lineage4.8
|
None
|
SAMEA3501070
|
RR-TB
|
lineage4.8
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4819166
|
Other
|
lineage3
|
gb
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
SRR19303899
|
Other
|
lineage3
|
None
|
ERR10796576
|
Sensitive
|
lineage4.9
|
None
|
SRR1180100
|
Other
|
lineage4.9
|
None
|
ERR473368
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR10796577
|
Other
|
lineage4.9
|
None
|
SRR12420587
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972274
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
SRR8600288
|
Other
|
La1.8.1
|
None
|
ERR5865343
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR176560
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR6046087
|
Sensitive
|
lineage4.9
|
None
|
SRR1180046
|
Other
|
lineage4.9
|
None
|
ERR2229148
|
Other
|
lineage4.8
|
dk
|
SRR9971122
|
MDR-TB
|
lineage4.8
|
None
|
SRR9971197
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4815517
|
Other
|
lineage1.2.2.2
|
None
|
ERR4769418
|
Other
|
La1.2
|
None
|
SRR1181277
|
Other
|
lineage4.9
|
None
|
SRR1183511
|
Other
|
lineage4.9
|
None
|
SRR7755649
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR10796555
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796629
|
Other
|
lineage4.1;lineage4.9
|
None
|
ERR212034
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR978734
|
RR-TB
|
lineage4.8
|
None
|
SRR11342671
|
RR-TB
|
lineage4.1.3
|
None
|
SRR3675539
|
HR-TB
|
lineage4.9;lineage7
|
None
|
SRR5007170
|
Other
|
lineage4.9
|
None
|
SRR9971372
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR10796632
|
Other
|
lineage4.3.3
|
None
|
ERR4814312
|
Other
|
lineage4
|
None
|
ERR4818952
|
Sensitive
|
lineage3
|
None
|
ERR978694
|
Other
|
lineage4.8
|
None
|
ERR9811805
|
MDR-TB
|
lineage4.8
|
None
|
SAMN02360570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1208530
|
Other
|
lineage4.9
|
None
|
SRR6045642
|
Other
|
lineage3.1.2.2
|
None
|
SRR1183214
|
Other
|
lineage4.9
|
None
|
SRR1183375
|
Other
|
lineage4.9
|
None
|
SRR12062551
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156804
|
Sensitive
|
lineage4.9
|
None
|
SRR11342648
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR11342693
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4034391
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1208925
|
Other
|
lineage4.9
|
None
|
SRR6397727
|
Other
|
lineage4.2.1.1
|
None
|
SRR6398013
|
Sensitive
|
lineage4.1.2
|
ca
|
SRR7069671
|
HR-TB
|
lineage3
|
None
|
SRR7069839
|
Other
|
lineage4.8
|
None
|
SRR7645924
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR18002887
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR18002981
|
Other
|
lineage2.2.1
|
None
|
ERR4815268
|
Sensitive
|
lineage4.8
|
None
|
SRR22424778
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR6045778
|
Other
|
lineage3.1
|
None
|
ERR6201843
|
Other
|
La1.2
|
None
|
ERR10796627
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
SRR6045986
|
Other
|
lineage3
|
None
|
SRR023487
|
RR-TB
|
lineage2.2.1
|
None
|
SRR10315693
|
RR-TB
|
lineage4.1.2
|
None
|
ERR4815118
|
Other
|
lineage2.2.2
|
None
|
ERR4815310
|
Other
|
lineage2.2.1;lineage4.9
|
None
|
SRR1183190
|
Other
|
lineage4.9
|
None
|
SRR7069097
|
Other
|
lineage3.1.2.1
|
None
|
SRR1791940
|
Other
|
La1.8.1
|
None
|
SRR1208196
|
Sensitive
|
lineage4.9
|
None
|
ERR2229733
|
Other
|
lineage4.8
|
dk
|
SRR7645974
|
Other
|
lineage4.3.4.1
|
None
|
ERR4821286
|
Other
|
lineage4.8
|
None
|
ERR3275190
|
Other
|
lineage3
|
nl
|
ERR978751
|
Other
|
lineage4.8
|
None
|
ERR4819314
|
Other
|
lineage1.1.1
|
None
|
SAMEA3501063
|
RR-TB
|
lineage4.8
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR7645928
|
Other
|
lineage4.7
|
None
|
ERR4819699
|
HR-TB
|
lineage4.6.2.2
|
gb
|
ERR4820324
|
Other
|
lineage4
|
None
|
ERR163952
|
Sensitive
|
lineage1.1.3.2
|
None
|
ERR2446580
|
Sensitive
|
lineage3.1.1
|
nl
|
SRR11567803
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3283046
|
Sensitive
|
lineage4.9
|
None
|
ERR4815777
|
Other
|
lineage4.9
|
None
|
SRR12882631
|
Other
|
lineage3.1.2.1
|
None
|
SRR6045159
|
Other
|
lineage3.1.1
|
None
|
SRR11342680
|
Other
|
lineage4.8
|
None
|
SRR6045424
|
Other
|
lineage1.1.2
|
None
|
ERR2653138
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4815780
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR10796630
|
Other
|
lineage6.2.3
|
None
|
ERR1199001
|
Sensitive
|
lineage4.6.1.1
|
None
|
ERR4769453
|
Other
|
La1.3
|
None
|
SRR1183314
|
Other
|
lineage4.9
|
None
|
ERR978755
|
RR-TB
|
lineage4.8
|
None
|
ERR4815784
|
Other
|
lineage2.2.1
|
gb
|
ERR4816866
|
Other
|
lineage2.2.1
|
None
|
ERR10796562
|
Other
|
lineage4.3.4.1
|
None
|
ERR4822085
|
Other
|
lineage4.8
|
gb
|
SRR1183358
|
Other
|
lineage4.9
|
None
|
ERR2228910
|
Other
|
lineage4.8
|
None
|
SRR7131104
|
HR-TB
|
lineage4.3.4.2
|
None
|
ERR911929_ERR911930
|
Other
|
lineage4.8
|
None
|
ERR2027209
|
MDR-TB
|
lineage1.2.1.1
|
None
|
ERR10796565
|
Other
|
lineage4.9
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR867527
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070223
|
HR-TB
|
lineage3
|
None
|
SRR9971088
|
RR-TB
|
lineage2.2.1
|
None
|
SRR18002891
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR037529
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR9971200
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR11342658
|
RR-TB
|
lineage4.1.2
|
None
|
SRR7069931
|
Other
|
lineage4.2.2.2
|
None
|
ERR387051
|
Other
|
lineage4.9
|
None
|
SRR11342684
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR4816610
|
Other
|
lineage4.3.3
|
None
|
ERR10219876
|
Other
|
lineage4.3.4.2
|
None
|
ERR4816833
|
Other
|
lineage4.1.1.3
|
None
|
SRR11342640
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1238559
|
Other
|
lineage4.9
|
None
|
ERR4819017
|
Other
|
lineage3
|
None
|
ERR3838816
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR1183133
|
Other
|
lineage4.9
|
None
|
SRR6046440
|
Other
|
lineage3.1.2.2
|
None
|
SRR21727760
|
Other
|
lineage2.2.1
|
None
|
ERR4817874
|
Other
|
lineage3
|
None
|
ERR978746
|
RR-TB
|
lineage4.8
|
None
|
ERR4819324
|
Other
|
lineage4.8
|
gb
|
SRR2101643
|
Other
|
lineage2.2.1
|
None
|
ERR473337
|
Other
|
lineage4.1.2
|
None
|
ERR4818407
|
Other
|
lineage4.3.2
|
None
|
ERR4819011
|
Other
|
lineage3.1.2.1
|
None
|
SRR6397441
|
Other
|
lineage4.5
|
None
|
ERR4820833
|
Other
|
lineage3;lineage4.9
|
None
|
ERR4819864
|
RR-TB
|
lineage1.1.3.1
|
None
|
ERR037504
|
Other
|
lineage4.9.1
|
None
|
SRR1183388
|
Other
|
lineage4.9
|
None
|
SRR1183472
|
Other
|
lineage4.9
|
None
|
SRR1208476
|
Other
|
lineage4.9
|
None
|
ERR3283051
|
Other
|
lineage4.9
|
None
|
SRR16278274
|
Other
|
La1.4
|
None
|
SRR1180125
|
Other
|
lineage4.9
|
None
|
SRR1183354
|
Other
|
lineage4.9
|
None
|
SRR1013561
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1181130
|
Other
|
lineage4.1.1.3
|
None
|
SRR5818591
|
Other
|
lineage4.2.2.2
|
dj
|
SRR6045422
|
Other
|
lineage4.3.1.1
|
None
|
SRR6982053
|
Sensitive
|
lineage4.3.4.1;lineage4.9
|
None
|
SRR7646014
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR7069258
|
HR-TB
|
lineage3
|
None
|
SRR5709926
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1208539
|
Sensitive
|
lineage4.9
|
None
|
SRR7070515
|
Other
|
lineage1.1.3.1
|
None
|
SRR7070602
|
Other
|
lineage4.2.1
|
None
|
SRR7131195
|
Other
|
lineage2.2.1
|
None
|
ERR473278
|
Sensitive
|
lineage4.9
|
None
|
ERR2229811
|
Other
|
lineage4.8
|
dk
|
ERR4821054
|
Sensitive
|
lineage3
|
None
|
ERR9117760
|
HR-TB
|
lineage4.3
|
None
|
SRR6045910
|
Sensitive
|
lineage3.1
|
None
|
ERR2027250
|
Other
|
lineage3.1.2
|
None
|
ERR4816464
|
Other
|
lineage3
|
None
|
ERR10796636
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046442
|
Other
|
lineage3
|
None
|
SRR6044993
|
Other
|
lineage3
|
None
|
ERR4821761
|
Other
|
lineage3
|
gb
|
SRR7068927
|
Other
|
lineage1.2.2.2
|
None
|
SRR1723899
|
Sensitive
|
lineage4.5
|
cn
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
ERR4821288
|
Other
|
lineage4.7
|
None
|
ERR987733
|
Other
|
lineage4.6.1.1
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR10869285
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1180495
|
Other
|
lineage4.9
|
None
|
SRR7645971
|
Other
|
lineage2.2.1
|
None
|
SRR1183121
|
Other
|
lineage4.9
|
None
|
SRR11342695
|
MDR-TB
|
lineage4.8
|
None
|
ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR11349207
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4817060
|
Other
|
|
None
|
SRR7069760
|
Other
|
lineage3
|
None
|
ERR4820318
|
Other
|
lineage4.2.2
|
None
|
SRR11342646
|
HR-TB
|
lineage3
|
None
|
ERR4818851
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR13591410
|
Other
|
lineage4.9
|
None
|
SRR18003024
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6785282
|
Other
|
lineage4.3.3
|
None
|
ERR4821718
|
Sensitive
|
lineage4.2.2.2
|
gb
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR1183192
|
Other
|
lineage4.9
|
None
|
SRR11972378
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR12062533
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR7069391
|
Other
|
lineage4.9
|
None
|
ERR2229336
|
Other
|
lineage4.8
|
None
|
SRR1183402
|
Other
|
lineage4.9
|
None
|
SRR19303907
|
Other
|
lineage4.8
|
None
|
SRR7070195
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR7070458
|
Sensitive
|
lineage3
|
None
|
SRR1180503
|
Other
|
lineage4.9
|
None
|
SRR1183277
|
Other
|
lineage4.9
|
None
|
SRR3675555
|
HR-TB
|
lineage2.1;lineage4.9;lineage7
|
None
|
SRR6044838
|
Other
|
lineage4.9
|
None
|
SRR6045909
|
Other
|
lineage4.8.1
|
None
|
SRR6046612
|
Other
|
lineage1.1.1.1
|
None
|
SRR18911231
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR21240029
|
Sensitive
|
lineage4.3.3
|
None
|
SRR7646018
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR867544
|
Other
|
lineage4.9
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
SRR7068876
|
Other
|
lineage4.8
|
None
|
SRR19303805
|
Sensitive
|
lineage4.8
|
None
|
SRR19304057
|
Sensitive
|
lineage4.4.1.2
|
None
|
SRR5007178
|
Pre-XDR-TB
|
lineage4.1.1.3.1
|
None
|
ERR2503533
|
Other
|
lineage4.1.2.1
|
fi
|
SRR18213736
|
Other
|
lineage3
|
None
|
ERR2228888
|
Other
|
lineage4.8
|
None
|
SRR19304089
|
Sensitive
|
lineage4.8
|
None
|
ERR3077969
|
Other
|
La1.3
|
None
|
ERR4816322
|
Other
|
lineage4.9
|
None
|
SRR21240055
|
Other
|
lineage4.1.2.1
|
None
|
ERR4816968
|
Other
|
lineage4.2.1
|
gb
|
SRR1183726
|
Sensitive
|
lineage4.9
|
None
|
SRR1183524
|
Other
|
lineage4.9
|
None
|
SRR1202410
|
Other
|
lineage4.9
|
None
|
ERR10796560
|
Other
|
lineage4.9
|
None
|
ERR560438
|
Other
|
lineage4.9
|
None
|
ERR978750
|
RR-TB
|
lineage4.8
|
None
|
ERR4818964
|
Other
|
lineage1.2.1.2.1
|
None
|
ERR4819007
|
Other
|
lineage2.2.1
|
None
|
ERR4820151
|
Other
|
lineage4.8
|
None
|
SRR7131149
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4815804
|
Sensitive
|
lineage4.2.1
|
gb
|
SRR7645906
|
Other
|
lineage2.2.1
|
None
|
SRR5007204
|
Other
|
lineage4.1.2.1
|
None
|
SRR9971220
|
RR-TB
|
lineage2.2.1
|
None
|
SRR21728339
|
Other
|
lineage3
|
None
|
SRR1180486
|
Other
|
lineage4.9
|
None
|
SRR22048536
|
Other
|
lineage4.3.3
|
None
|
SRR7068875
|
Other
|
lineage3.1.2.2
|
None
|
ERR978733
|
RR-TB
|
lineage4.8
|
None
|
ERR405190
|
Sensitive
|
lineage4.9
|
None
|
SRR1202520
|
Sensitive
|
lineage4.9
|
None
|
ERR4818104
|
Sensitive
|
lineage4.1.2
|
gb
|
SRR5818572
|
Sensitive
|
lineage4.2.2.2
|
None
|
SRR5818622
|
Sensitive
|
lineage4.2.2.2
|
None
|
SRR6046275
|
Other
|
lineage3.1.1;lineage4
|
None
|
ERR4818646
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR7069922
|
Other
|
lineage2.2.1
|
None
|
ERR978746_ERR978747_ERR978748
|
RR-TB
|
lineage4.8
|
None
|
SRR7755695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9117812
|
Other
|
lineage4.3.1.1
|
None
|
SRR18003009
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513382
|
RR-TB
|
lineage4.1.1.3
|
None
|
SRR1184012
|
Other
|
lineage4.1.1.3
|
None
|
SRR7069347
|
Other
|
lineage4.1.2.1
|
None
|
SRR11342668
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR11349191
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR023450
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1183168
|
Other
|
lineage4.9
|
None
|
ERR4819198
|
Other
|
lineage2.2.1
|
None
|
ERR2229033
|
Other
|
lineage4.8
|
None
|
ERR4819772
|
Other
|
lineage1.1.3.1
|
None
|
ERR4819948
|
Other
|
lineage4.4.1.1
|
None
|
ERR773806
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1180062
|
Other
|
lineage4.9
|
None
|
SRR1182927
|
Other
|
lineage4.9
|
None
|
SRR6046815
|
Other
|
lineage3
|
None
|
ERR4814362
|
Other
|
lineage4.8
|
None
|
SRR1180687
|
Other
|
lineage4.9
|
None
|
SRR6045485
|
Other
|
lineage4.9
|
None
|
SRR19303820
|
RR-TB
|
lineage4.8
|
None
|
SRR7645977
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1182923
|
Other
|
lineage4.9
|
None
|
SRR1183684
|
Other
|
lineage4.9
|
None
|
SRR1183321
|
Other
|
lineage4.9
|
None
|
ERR027451
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR7131236
|
Other
|
lineage4.3.4.2
|
None
|
SRR7068998
|
Sensitive
|
lineage3.1.3
|
None
|
ERR4814623
|
Sensitive
|
lineage4.8
|
None
|
SRR9971144
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1181592
|
Other
|
lineage4.9
|
None
|
ERR11465627
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR14801652
|
HR-TB
|
lineage4.3.3
|
None
|
SRR18002875
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1183686
|
Sensitive
|
lineage4.9
|
None
|
SRR18002961
|
Other
|
lineage2.2.1
|
None
|
ERR4821679
|
Other
|
lineage4.3.3
|
None
|
SRR6045017
|
Other
|
lineage3.1.2.2
|
None
|
ERR1023236
|
Other
|
lineage6.1.3
|
None
|
ERR9786810
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR18002980
|
Other
|
lineage2.2.1
|
None
|
ERR2514215
|
Other
|
lineage2.2.1
|
gb
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
ERR4818691
|
Other
|
lineage4.8
|
None
|
ERR4817294
|
Other
|
lineage4.1.2
|
None
|
ERR2228965
|
Other
|
lineage4.8
|
None
|
ERR4814617
|
Other
|
lineage1.1.3.1
|
None
|
SRR3675527
|
Other
|
lineage4.9
|
None
|
ERR978726_ERR978727
|
RR-TB
|
lineage4.8
|
None
|
SRR10214505
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR6856091
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR1180672
|
Other
|
lineage4.9
|
None
|
SRR6045384
|
Other
|
lineage4.1.2.1
|
None
|
SRR7645972
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR18002908
|
Other
|
lineage2.2.1
|
None
|
SRR6046159
|
Other
|
lineage4.8.2
|
None
|
SRR6045887
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR18002998
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7069027
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR11342655
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992784
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4815615
|
Other
|
lineage3
|
gb
|
SRR1172808
|
Other
|
lineage4.9
|
None
|
SRR1183360
|
Other
|
lineage4.9
|
None
|
SRR1182928
|
Other
|
lineage4.9
|
None
|
SRR1180455
|
Other
|
lineage4.9
|
None
|
SAMEA3501046
|
RR-TB
|
lineage4.8
|
None
|
SRR7070144
|
Other
|
lineage4.8
|
None
|
SRR6045743
|
Other
|
lineage3
|
None
|
ERR751330
|
MDR-TB
|
lineage5.1.1
|
None
|
SRR1183170
|
Other
|
lineage4.9
|
None
|
SRR6153150
|
Other
|
lineage3.1.1
|
None
|
SAMN02360579
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR18003023
|
Other
|
lineage2.2.1
|
None
|
SRR7131275
|
Other
|
lineage4.1.2.1
|
None
|
SRR18002872
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070134
|
Other
|
lineage3.1.1
|
None
|
SRR6046291
|
Other
|
lineage3
|
None
|
SRR6046766
|
Other
|
lineage3.1.1
|
None
|
SRR7068971
|
Sensitive
|
lineage3
|
None
|
ERR3283008
|
Other
|
lineage4.9
|
None
|
SRR9971333
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR10796635
|
Other
|
lineage4.8
|
None
|
ERR4819175
|
Other
|
lineage4.1.1.3
|
gb
|
SRR10808730
|
Other
|
lineage4.9
|
None
|
ERR036225
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR5979407
|
Other
|
lineage3
|
None
|
SRR11349205
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6046729
|
Other
|
lineage3
|
None
|
ERR4815452
|
Other
|
lineage4.3.3
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR18003002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5818672
|
Other
|
lineage1.2.2.2
|
None
|
ERR017781
|
Other
|
lineage3
|
None
|
ERR4820019
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR18002956
|
Other
|
lineage2.2.1
|
None
|
SRR18003031
|
HR-TB
|
lineage2.2.1
|
None
|
SRR18003045
|
Other
|
lineage2.2.1
|
None
|
ERR10796599
|
Other
|
lineage4.8
|
None
|
ERR10796597
|
Other
|
lineage4.3.3
|
None
|
ERR216930
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR2513405
|
Other
|
lineage2.2.1
|
None
|
SRR1180025
|
Other
|
lineage4.9
|
None
|
SRR12708406
|
HR-TB
|
lineage2.2.1;lineage4.9
|
None
|
SRR12882020
|
Other
|
lineage3.1.1
|
None
|
ERR4821325
|
Other
|
lineage3
|
None
|
SRR6046343
|
Other
|
lineage2.2.1
|
None
|
SRR7131233
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7131287
|
Other
|
lineage2.2.1.1
|
None
|
ERR2228810
|
Other
|
lineage4.8;lineage4.9
|
None
|
ERR2600613
|
Sensitive
|
lineage4.8
|
None
|
ERR978727
|
Other
|
lineage4.8
|
None
|
ERR4816745
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4817398
|
Other
|
lineage3.1.1
|
None
|
SRR7069314
|
Other
|
lineage3
|
None
|
ERR108476
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR12062493
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR18003030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10796561
|
Other
|
lineage4.3.2
|
None
|
ERR10796591
|
Other
|
lineage4.9
|
None
|
SRR6046273
|
Other
|
lineage3.1.2
|
None
|
SRR18002930
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002947
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9117732
|
Other
|
lineage1.2.2.2
|
None
|
ERR4814911
|
Other
|
lineage4.3.3
|
None
|
ERR4821214
|
Other
|
lineage1.2.1.2.1
|
None
|
SRR11349147
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR10315465
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1180482
|
Other
|
lineage4.9
|
None
|
ERR4816856
|
Other
|
lineage4.1.2.1
|
None
|
SRR9971017
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4816868
|
Other
|
lineage4.4.1.1
|
None
|
SRR9971185
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
SRR9971223
|
Other
|
lineage2.2.1
|
None
|
SRR1202612
|
Sensitive
|
lineage4.9
|
None
|
SRR3675261
|
Other
|
lineage1.2.1.1
|
None
|
ERR2513082
|
Other
|
lineage4.1.2.1
|
gb
|
SRR1180020
|
Other
|
lineage4.9
|
None
|
SRR7755657
|
Other
|
lineage4.8
|
None
|
ERR3559282
|
HR-TB
|
lineage4.2.2
|
None
|
SRR6044936
|
Other
|
lineage4.6
|
None
|
SRR6397733
|
Other
|
lineage4.4.1.2
|
None
|
ERR4819593
|
Sensitive
|
lineage4.5
|
None
|
ERR4820798
|
Other
|
lineage3.1.2.1
|
gb
|
SRR6152979
|
Other
|
lineage4.7
|
None
|
SRR6153036
|
Other
|
lineage1.2.1.2.1;lineage4.9
|
None
|
SRR11972438
|
Sensitive
|
lineage1.1.1
|
None
|
SRR7070665
|
HR-TB
|
lineage3
|
None
|
SRR5007161
|
RR-TB
|
lineage4.1.1.3.1;lineage4.9
|
None
|
SRR5007165
|
Other
|
lineage3
|
None
|
ERR4820290
|
Other
|
lineage3
|
None
|
SRR10315464
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR978761
|
Other
|
lineage4.8
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
SRR18003015
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822261
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4815783
|
Other
|
lineage4.1.2.1
|
gb
|
SRR10315556
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1208557
|
Other
|
lineage4.9
|
None
|
ERR3275321
|
Sensitive
|
lineage3.1.1
|
nl
|
ERR9117763
|
HR-TB
|
lineage3
|
None
|
ERR867568
|
Other
|
lineage2.2.1;lineage4
|
None
|
ERR4818440
|
Other
|
lineage6.3.1
|
None
|
ERR4818624
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18003013
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR18002941
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1208559
|
Other
|
lineage4.9
|
None
|
SRR18003042
|
Other
|
lineage2.2.1
|
None
|
ERR405191
|
Sensitive
|
lineage4.9
|
None
|
ERR867524
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR1183057
|
Other
|
lineage4.9
|
None
|
ERR978694_ERR978693
|
Other
|
lineage4.8
|
None
|
ERR4820720
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045464
|
Other
|
lineage4.1.1.3
|
None
|
SRR1181147
|
Other
|
lineage4.9
|
None
|
SRR3675565
|
Other
|
lineage4
|
None
|
ERR4822138
|
Other
|
lineage4.1.2.1
|
None
|
ERR9117827
|
Other
|
lineage1.2.2.2
|
None
|
SRR18002933
|
Other
|
lineage2.2.1
|
None
|
SRR1183665
|
Other
|
lineage4.9
|
None
|
SRR1180252
|
Other
|
lineage4.9
|
None
|
SRR1208791
|
Other
|
lineage4.9
|
None
|
ERR10796564
|
Other
|
lineage4.3.3
|
None
|
ERR978726
|
RR-TB
|
lineage4.8
|
None
|
SRR1180578
|
Other
|
lineage4.9
|
None
|
SRR7131183
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045843
|
Other
|
lineage4.2.2.2
|
None
|
SRR6046616
|
Other
|
lineage4.3.1.1
|
None
|
SRR13423629
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6046210
|
Other
|
lineage4.9
|
None
|
SRR6046208
|
Other
|
lineage4.8
|
None
|
SRR1202599
|
Other
|
lineage4.9
|
None
|
SRR6045957
|
Other
|
lineage4.9
|
None
|
SRR6389899
|
Other
|
lineage4.1.2
|
None
|
SRR7131229
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045664
|
Other
|
lineage4.2.1
|
None
|
SRR7070461
|
Other
|
lineage3
|
None
|
ERR4818200
|
Other
|
lineage3.1.2
|
gb
|
SRR3675552
|
Other
|
lineage4.9
|
None
|
ERR2600609
|
Other
|
lineage4.8
|
None
|
SRR7755654
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR10796571
|
Other
|
lineage4.9
|
None
|
ERR10796633
|
Other
|
lineage4.3.4.2
|
None
|
SRR6046852
|
MDR-TB
|
lineage3
|
None
|
SRR18002974
|
Other
|
lineage2.2.1
|
None
|
SRR1202450
|
Sensitive
|
lineage4.9
|
None
|
SRR1735596
|
RR-TB
|
lineage4.9
|
None
|
SRR11349211
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR019855
|
Other
|
lineage3
|
None
|
SRR1208878
|
Sensitive
|
lineage4.9
|
None
|
ERR8774355
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10796628
|
Other
|
lineage4.3.3
|
None
|
SRR6045071
|
Other
|
lineage4.3.1.1
|
None
|
ERR4818548
|
Other
|
lineage4.3.3
|
None
|
SRR1180241
|
Other
|
lineage4.9
|
None
|
ERR6866241
|
Other
|
lineage4.3.2
|
None
|
ERR3559287
|
HR-TB
|
lineage4.2.2
|
None
|
SRR7069800
|
Other
|
lineage3.1.2.1
|
None
|
SRR7070609
|
Other
|
lineage4.2.2.2
|
None
|
SRR1183304
|
Other
|
lineage4.9
|
None
|
SRR7068873
|
Other
|
lineage4.8
|
None
|
SRR6046117
|
Other
|
lineage4.9
|
None
|
SRR2101691
|
Other
|
lineage2.2.1
|
None
|
ERR10796589
|
Other
|
lineage4.9
|
None
|
SRR7069518
|
Other
|
lineage4.8
|
None
|
SRR7070320
|
Other
|
lineage4.8
|
None
|
ERR4821119
|
Other
|
lineage4.4.1.1
|
None
|
ERR10796634
|
Other
|
lineage4.7
|
None
|
SRR3675520
|
Other
|
La1.7.X-unk4;lineage4.9
|
None
|
SRR1202408
|
Other
|
lineage4.9
|
None
|
SRR1202713
|
Sensitive
|
lineage4.9
|
None
|
ERR4586795
|
Other
|
La1.8.1
|
None
|
ERR2229436
|
Other
|
lineage4.8
|
None
|
SRR6046733
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10796594
|
Other
|
lineage4.9
|
None
|
ERR10796640
|
Other
|
lineage4.1.2.1
|
None
|
ERR4769554
|
RR-TB
|
lineage4.9
|
None
|
SRR11342669
|
Other
|
lineage4.8
|
None
|
ERR4815022
|
Other
|
lineage3.1.2.1
|
None
|
ERR978756
|
Other
|
lineage4.8
|
None
|
SRR5007167
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
SRR7755655
|
Other
|
lineage4.1.2.1
|
None
|
ERR2513619
|
Sensitive
|
lineage4.8
|
gb
|
SRR18213721
|
Other
|
lineage4.8
|
None
|
ERR10796626
|
Other
|
lineage4.1.2.1
|
None
|
SRR18002876
|
MDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR7131123
|
Other
|
lineage4.8
|
None
|
SRR7645899
|
Other
|
lineage2.2.1
|
None
|
SRR5007163
|
Other
|
lineage3;lineage4.9
|
None
|
SRR7069255
|
Other
|
lineage4.1.2
|
None
|
SRR7069835
|
Other
|
lineage2.2.1
|
None
|
SRR3675495
|
Other
|
lineage2.1;lineage4.9
|
None
|