Run ID: SRR6397575
Sample name:
Date: 04-04-2023 14:03:14
Number of reads: 716839
Percentage reads mapped: 10.49
Strain: lineage4.3.4.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 0.99 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 0.95 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 0.96 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.88 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6140 | p.Val301Leu | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491035 | p.Val85Ile | missense_variant | 0.13 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.15 |
rpoC | 766085 | p.Pro906Thr | missense_variant | 0.13 |
rpoC | 767183 | p.Val1272Met | missense_variant | 0.25 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779195 | p.Thr69Asn | missense_variant | 0.17 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304814 | p.Met628Ile | missense_variant | 0.14 |
Rv1258c | 1407021 | p.Ala107Gly | missense_variant | 0.14 |
Rv1258c | 1407406 | c.-66G>T | upstream_gene_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472101 | n.256G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472262 | n.417C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472269 | n.424G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472271 | n.426T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472277 | n.432C>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473260 | n.1415G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.48 |
rrl | 1474824 | n.1167A>C | non_coding_transcript_exon_variant | 0.49 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1474830 | n.1173A>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1474839 | n.1182C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.49 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1474892 | n.1235G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1474903 | n.1246T>A | non_coding_transcript_exon_variant | 0.53 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1474920 | n.1263G>C | non_coding_transcript_exon_variant | 0.59 |
rrl | 1474928 | n.1271C>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476595 | n.2938C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476596 | n.2939C>T | non_coding_transcript_exon_variant | 0.3 |
inhA | 1674300 | c.99C>T | synonymous_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102404 | c.639G>T | synonymous_variant | 0.15 |
katG | 2154349 | p.Glu588Gly | missense_variant | 0.18 |
katG | 2156046 | c.66C>A | synonymous_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714598 | c.735C>A | synonymous_variant | 0.15 |
pepQ | 2859501 | c.918G>T | synonymous_variant | 0.18 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
thyA | 3074447 | p.Arg9Ser | missense_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3338948 | c.-170T>C | upstream_gene_variant | 0.17 |
fbiD | 3338952 | c.-166C>A | upstream_gene_variant | 0.17 |
Rv3083 | 3448382 | c.-122G>A | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475058 | p.Ser351Ile | missense_variant | 0.14 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
alr | 3840719 | c.702A>G | synonymous_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4040182 | p.Gly175Cys | missense_variant | 0.13 |
embC | 4241020 | c.1158G>A | synonymous_variant | 0.14 |
embC | 4241267 | p.Val469Met | missense_variant | 0.14 |
embC | 4241608 | c.1746C>T | synonymous_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242857 | p.His999Asp | missense_variant | 0.22 |
embA | 4246189 | p.Asn986Ser | missense_variant | 0.33 |
embB | 4246799 | p.Gly96Trp | missense_variant | 0.17 |
embB | 4246824 | p.Lys104Arg | missense_variant | 0.18 |
aftB | 4268277 | p.Pro187Gln | missense_variant | 0.2 |
aftB | 4268582 | c.255C>G | synonymous_variant | 0.15 |
ubiA | 4269220 | p.Ala205Val | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |