lineage | Count |
---|---|
lineage4.8 | 14 |
lineage2.2.1 | 24 |
lineage4.9 | 258 |
lineage4.7 | 2 |
lineage4.2.1.1 | 3 |
lineage1.2.2.2 | 1 |
lineage1.2.2.1 | 3 |
lineage4.8;lineage4.9 | 1 |
La1.2 | 9 |
lineage4.4.1.1;lineage4.6.1.2 | 4 |
lineage4.3.2 | 2 |
lineage3 | 6 |
lineage4.3.4.2.1 | 6 |
lineage4.2.2.2 | 3 |
La1.8.1;lineage4.9 | 1 |
lineage4.9.1 | 1 |
lineage4.2.1 | 1 |
La1.8.2 | 6 |
lineage4.3.2.1 | 6 |
lineage4.1.1.3 | 3 |
lineage6.2.1 | 1 |
lineage2.2.1;lineage4 | 1 |
lineage3;lineage4.9 | 1 |
lineage4.1.1 | 1 |
lineage2.2.1.1 | 3 |
lineage1.2.1.2.1;lineage4.9 | 1 |
lineage4.1.4 | 1 |
lineage4.4.1.1.1 | 1 |
lineage4.1.2 | 2 |
lineage4.4.1.2 | 1 |
lineage4.1.2.1 | 8 |
lineage2.2.2 | 2 |
1 | |
lineage4.3.4.1 | 1 |
lineage2.2.1.2 | 1 |
lineage4.6.1.1 | 3 |
lineage1.2.1.2.1 | 3 |
lineage1.1.1.1 | 2 |
lineage4.1.1.2 | 1 |
lineage4.5 | 2 |
lineage1.1.2 | 1 |
lineage4.6.2.2 | 2 |
lineage4.4.1.1 | 2 |
lineage4.6.1.2 | 1 |
lineage3.1.1 | 2 |
La1.8.1 | 1 |
lineage4.3.3 | 2 |
La1.2.BCG;lineage4.9 | 3 |
lineage1.1.1 | 1 |
lineage2.2.2;lineage4 | 2 |
La1.6 | 1 |
spoligotype | Count |
---|---|
None | 409 |
ID | Drug resistance | Lineage | Country iso2 | ERR2228888 | Other | lineage4.8 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861637 | Other | lineage4.9 | None | SRR7504773 | Sensitive | lineage4.9 | None | SRR13861443 | Other | lineage4.9 | None | ERR502483 | Sensitive | lineage4.9 | None | SRR13861374 | Other | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR6045036 | Other | lineage4.9 | None | ERR502492 | Sensitive | lineage4.9 | None | SRR6152979 | Other | lineage4.7 | None | SRR6397638 | Other | lineage4.2.1.1 | None | SRR18911000 | Sensitive | lineage2.2.1 | None | SRR6397721 | Other | lineage4.2.1.1 | None | SRR3105736 | Sensitive | lineage1.2.2.2 | None | ERR1873560 | Pre-XDR-TB | lineage2.2.1 | None | ERR502497 | Sensitive | lineage4.9 | None | SRR13861369 | Other | lineage4.9 | None | SAMN02350450 | Sensitive | lineage1.2.2.1 | None | SRR13861727 | Other | lineage4.9 | None | SRR13861673 | Other | lineage4.9 | None | SRR13861180 | Other | lineage4.9 | None | SRR13861187 | Other | lineage4.9 | None | SRR13861720 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861648 | Other | lineage4.9 | None | SRR1049030 | Sensitive | lineage4.9 | None | SRR13861447 | Other | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861482 | Other | lineage4.9 | None | SRR13861312 | Other | lineage4.9 | None | SRR13861562 | Other | lineage4.9 | None | SRR13861572 | Other | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR1180982 | Other | lineage2.2.1 | None | ERR2228874 | Other | lineage4.8;lineage4.9 | None | SRR6152986 | Other | lineage2.2.1 | None | SRR2101691 | Other | lineage2.2.1 | None | SRR13861593 | Other | lineage4.9 | None | ERR6198389 | Other | La1.2 | None | ERR502490 | Sensitive | lineage4.9 | None | SRR6982400 | Other | lineage2.2.1 | None | SRR13861651 | Other | lineage4.9 | None | SRR1049563 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | SRR13861683 | Other | lineage4.9 | None | SRR13861583 | Other | lineage4.9 | None | SRR13861487 | Other | lineage4.9 | None | ERR5987396 | MDR-TB | lineage4.3.2 | None | SRR13861486 | Other | lineage4.9 | None | ERR4423724 | RR-TB | lineage3 | None | SRR13861498 | Other | lineage4.9 | None | SRR13861598 | Other | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR13861497 | HR-TB | lineage4.9 | None | SRR13861157 | Other | lineage4.9 | None | SRR1140691 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | SRR13861523 | Other | lineage4.9 | None | ERR7801177 | Other | lineage4.3.4.2.1 | None | SRR13861567 | Other | lineage4.9 | None | ERR6198394 | Other | La1.2 | None | ERR6201800 | Other | La1.2 | None | SRR1049569 | Sensitive | lineage4.2.2.2 | None | SRR13861406 | Other | lineage4.9 | None | SRR13861416 | Other | lineage4.9 | None | SRR1791899 | Sensitive | La1.8.1;lineage4.9 | None | ERR1023527 | Other | lineage4.9.1 | None | SRR4034677 | Other | lineage2.2.1 | za | ERR6201910 | Other | La1.2 | None | ERR502493 | Sensitive | lineage4.9 | None | ERR502498 | Sensitive | lineage4.9 | None | SRR13861248 | Other | lineage4.9 | None | SRR13861377 | Other | lineage4.9 | None | SRR13861446 | Other | lineage4.9 | None | SRR13861530 | Other | lineage4.9 | None | SRR13861574 | Sensitive | lineage4.9 | None | SRR13861634 | Other | lineage4.9 | None | SRR7645834 | Other | lineage2.2.1 | None | SRR13861491 | Other | lineage4.9 | None | SRR13861433 | Other | lineage4.9 | None | SRR1180243 | MDR-TB | lineage4.2.1 | None | ERR2228859 | Other | lineage4.8 | None | ERR6149875 | Other | La1.8.2 | None | SRR1140927 | Sensitive | lineage4.3.2.1 | None | ERR3324355 | Sensitive | lineage4.1.1.3 | None | SRR13861649 | Other | lineage4.9 | None | SRR13861423 | Other | lineage4.9 | None | ERR5865119 | MDR-TB | lineage2.2.1 | None | SRR13861191 | Other | lineage4.9 | None | SRR13861285 | Other | lineage4.9 | None | SRR13861630 | Other | lineage4.9 | None | SRR13861697 | Other | lineage4.9 | None | SRR13861244 | Other | lineage4.9 | None | SRR13861246 | Other | lineage4.9 | None | SRR13861411 | Other | lineage4.9 | None | ERR702401 | Sensitive | lineage6.2.1 | gh | SRR1184383 | Other | lineage4.9 | None | ERR6201798 | Other | La1.2 | None | SRR13861580 | Other | lineage4.9 | None | SRR13861286 | Other | lineage4.9 | None | SRR13861207 | Other | lineage4.9 | None | SRR6982448 | Sensitive | lineage2.2.1;lineage4 | None | SRR13861179 | Other | lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR13861150 | Other | lineage4.9 | None | SRR1172808 | Other | lineage4.9 | None | SRR13861323 | Other | lineage4.9 | None | SAMN02350456 | Sensitive | lineage4.3.2.1 | None | SRR13861410 | Other | lineage4.9 | None | SRR7444103 | Sensitive | lineage4.9 | None | ERR2229336 | Other | lineage4.8 | None | ERR6149876 | Other | La1.8.2 | None | SRR13861147 | Other | lineage4.9 | None | SRR13861309 | Other | lineage4.9 | None | SRR13861362 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861421 | Other | lineage4.9 | None | SRR13861426 | Other | lineage4.9 | None | SRR13861454 | Other | lineage4.9 | None | SRR13861465 | Other | lineage4.9 | None | SRR13861503 | Other | lineage4.9 | None | SRR13861521 | Other | lineage4.9 | None | SRR13861537 | Other | lineage4.9 | None | SRR13861653 | Other | lineage4.9 | None | SRR13861265 | HR-TB | lineage4.9 | None | SRR13861554 | Other | lineage4.9 | None | SRR13861608 | Other | lineage4.9 | None | SRR13861680 | Other | lineage4.9 | None | SRR1049568 | Sensitive | lineage4.2.2.2 | None | SRR6397588 | Other | lineage2.2.1 | None | SRR6397727 | Other | lineage4.2.1.1 | None | SRR13861476 | Other | lineage4.9 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861607 | Other | lineage4.9 | None | SRR13861725 | Other | lineage4.9 | None | SRR6397568 | Other | lineage4.1.1 | None | ERR4769512 | Sensitive | lineage4.9 | None | ERR190388 | Sensitive | lineage4.9 | None | SRR6896178 | Sensitive | lineage2.2.1 | None | SRR13861141 | Other | lineage4.9 | None | SRR13861159 | Other | lineage4.9 | None | SRR13861210 | Other | lineage4.9 | None | SRR13861495 | HR-TB | lineage4.9 | None | SRR13861392 | Other | lineage4.9 | None | SRR13861303 | Other | lineage4.9 | None | SRR1062860 | Sensitive | lineage2.2.1.1 | None | SRR21728339 | Other | lineage3 | None | SRR6153036 | Other | lineage1.2.1.2.1;lineage4.9 | None | SRR13861705 | Sensitive | lineage4.9 | None | SRR1011489 | Sensitive | lineage2.2.1.1 | None | SRR13861459 | HR-TB | lineage4.9 | None | ERR3324351 | HR-TB | lineage4.1.4 | None | SRR13861531 | Other | lineage4.9 | None | ERR6149870 | Other | La1.8.2 | None | SRR13861373 | Other | lineage4.9 | None | SRR13861453 | Other | lineage4.9 | None | SRR10315641 | MDR-TB | lineage4.4.1.1.1 | None | SRR13861353 | Other | lineage4.9 | None | SRR4033093 | Sensitive | lineage4.1.2 | None | SRR13861143 | RR-TB | lineage4.9 | None | SRR13861195 | Other | lineage4.9 | None | SRR13861227 | Other | lineage4.9 | None | SRR6389899 | Other | lineage4.1.2 | None | SRR6397585 | Other | lineage4.4.1.2 | None | SRR7131220 | Other | lineage4.1.2.1 | None | SRR6982558 | Sensitive | lineage4.3.4.2.1 | None | SRR10869294 | Pre-XDR-TB | lineage2.2.2 | None | SRR13861587 | Other | lineage4.9 | None | SRR13861182 | Other | lineage4.9 | None | SRR13861142 | Other | lineage4.9 | None | SRR13861188 | Other | lineage4.9 | None | SRR13861264 | HR-TB | lineage4.9 | None | SRR13861422 | Other | lineage4.9 | None | ERR3275567 | Other | lineage3 | nl | SRR6982196 | Sensitive | None | SRR13861379 | Other | lineage4.9 | None | SRR13861175 | Other | lineage4.9 | None | ERR6201802 | Other | La1.2 | None | ERR6201814 | Other | La1.2 | None | ERR176470 | Other | lineage4.3.4.1 | mw | SRR13861631 | Other | lineage4.9 | None | SRR13861174 | Other | lineage4.9 | None | SRR13861331 | Other | lineage4.9 | None | SRR1062863 | Sensitive | lineage1.2.2.1 | None | SAMN02380985 | Sensitive | lineage4.2.2.2 | None | SRR13861144 | Other | lineage4.9 | None | SRR13861280 | Other | lineage4.9 | None | SRR13861579 | Other | lineage4.9 | None | SRR6397770 | Other | lineage4.7 | None | SRR1062873 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | SRR5065440 | Other | lineage2.2.1.2 | None | SAMN02567676 | MDR-TB | lineage4.6.1.1 | None | SRR13861254 | Other | lineage4.9 | None | SRR13861164 | Other | lineage4.9 | None | SRR6856032 | Sensitive | lineage2.2.1 | None | SRR13861734 | Other | lineage4.9 | None | SRR6397575 | Other | lineage4.3.4.2.1 | None | SRR6982494 | Other | lineage2.2.2 | None | ERR3324362 | HR-TB | lineage4.1.2.1 | None | SRR13861728 | Other | lineage4.9 | None | ERR6149874 | Other | La1.8.2 | None | SRR5065527 | Other | lineage2.2.1 | None | SRR7131185 | Other | lineage4.1.2.1 | None | ERR6140667 | Other | La1.8.2 | None | SRR6832507 | Other | lineage4.8 | None | ERR036215 | Other | lineage4.8 | None | ERR037234 | Sensitive | lineage4.9 | None | SRR13861559 | Other | lineage4.9 | None | SRR6982509 | Sensitive | lineage4.3.2.1 | None | SRR6397548 | HR-TB | lineage1.2.1.2.1 | None | ERR2446433 | Other | lineage4.1.2.1 | None | ERR1034692 | Other | lineage1.2.1.2.1 | None | SRR6397771 | Other | lineage1.1.1.1 | None | SRR13861462 | Other | lineage4.9 | None | SRR5341417 | HR-TB | lineage3 | None | SRR13861278 | Other | lineage4.9 | None | SRR6982088 | Other | lineage4.1.1.2 | None | SRR13861283 | Other | lineage4.9 | None | ERR2446248 | Other | lineage3 | nl | SRR13861236 | Other | lineage4.9 | None | SRR13861452 | Other | lineage4.9 | None | SRR13861461 | Other | lineage4.9 | None | SRR13861429 | Other | lineage4.9 | None | ERR502485 | Sensitive | lineage4.9 | None | SRR13861299 | Other | lineage4.9 | None | SRR13861639 | Other | lineage4.9 | None | SRR6397441 | Other | lineage4.5 | None | SRR13861691 | Other | lineage4.9 | None | SRR13861494 | Other | lineage4.9 | None | SRR5341390 | HR-TB | lineage1.1.2 | None | SRR7444098 | Sensitive | lineage4.9 | None | SRR13861718 | Other | lineage4.9 | None | SRR13861724 | Other | lineage4.9 | None | SRR13861162 | Other | lineage4.9 | None | SRR13861192 | Other | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861479 | Other | lineage4.9 | None | SRR6982106 | Sensitive | lineage4.8 | None | ERR2229337 | Other | lineage4.8 | None | SRR10315603 | MDR-TB | lineage4.8 | None | SRR13591410 | Other | lineage4.9 | None | SRR13861201 | Other | lineage4.9 | None | SRR13861213 | Other | lineage4.9 | None | SRR13861430 | Other | lineage4.9 | None | SRR13861431 | Other | lineage4.9 | None | SRR13861555 | Other | lineage4.9 | None | SRR13861641 | Other | lineage4.9 | None | SRR13861624 | Other | lineage4.9 | None | SRR13861258 | Other | lineage4.9 | None | SRR13861274 | Other | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR13861330 | Other | lineage4.9 | None | SRR13861457 | Other | lineage4.9 | None | SRR13861449 | Other | lineage4.9 | None | SRR13861569 | Other | lineage4.9 | None | SRR13861717 | Other | lineage4.9 | None | SRR13861584 | Other | lineage4.9 | None | SRR13861282 | Other | lineage4.9 | None | SRR13861325 | Other | lineage4.9 | None | SRR13861668 | Other | lineage4.9 | None | SRR6397406 | Other | lineage4.1.2.1 | None | SRR13861240 | Other | lineage4.9 | None | SRR13861420 | Other | lineage4.9 | None | ERR502472 | Sensitive | lineage4.6.2.2 | None | DRR184644 | HR-TB | lineage2.2.1 | None | SRR13861440 | Other | lineage4.9 | None | SRR5065506 | HR-TB | lineage1.1.1.1 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861714 | Other | lineage4.9 | None | SRR1162501 | Other | lineage2.2.1 | None | SRR13861390 | Other | lineage4.9 | None | SRR13861232 | Other | lineage4.9 | None | SRR13861156 | Other | lineage4.9 | None | SRR13861206 | Other | lineage4.9 | None | SRR6981966 | Other | lineage2.2.1 | None | SRR13861217 | Other | lineage4.9 | None | SRR7444074 | Sensitive | lineage4.9 | None | SRR1011492 | Sensitive | lineage1.2.2.1 | None | ERR2229033 | Other | lineage4.8 | None | SRR13861626 | Other | lineage4.9 | None | SRR13861307 | Other | lineage4.9 | None | SRR13861463 | Other | lineage4.9 | None | SRR13861597 | Other | lineage4.9 | None | SAMN02350447 | Sensitive | lineage2.2.1.1 | None | SRR1019130 | Sensitive | lineage4.3.2.1 | None | SRR19612366 | Other | lineage4.5 | None | SRR13861438 | Other | lineage4.9 | None | ERR2229780 | Other | lineage4.9 | None | SRR13861230 | Other | lineage4.9 | None | SRR13861231 | Other | lineage4.9 | None | ERR181733 | Sensitive | lineage4.3.4.2.1 | None | SRR6397818 | RR-TB | lineage4.4.1.1 | None | SRR13861658 | Other | lineage4.9 | None | ERR6201832 | Other | La1.2 | None | SRR305201 | Sensitive | lineage4.9 | None | ERR3324347 | Sensitive | lineage4.1.2.1 | None | ERR036194 | Other | lineage4.6.1.2 | None | SRR13861383 | Other | lineage4.9 | None | ERR2228941 | Other | lineage4.8 | None | SRR13861186 | Other | lineage4.9 | None | SRR12882768 | RR-TB | lineage3.1.1 | None | SRR6397551 | Other | lineage4.1.1.3 | None | SRR13861281 | Other | lineage4.9 | None | SRR13861514 | Other | lineage4.9 | None | SRR13861586 | Other | lineage4.9 | None | SRR13861682 | Sensitive | lineage4.9 | None | SRR1196582 | Other | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR13861294 | Other | lineage4.9 | None | SRR13861345 | Other | lineage4.9 | None | SRR13861468 | Other | lineage4.9 | None | SRR13861519 | Other | lineage4.9 | None | SRR13861522 | Other | lineage4.9 | None | SRR13861535 | Other | lineage4.9 | None | SRR13861417 | HR-TB | lineage4.9 | None | ERR192071 | Other | La1.8.1 | None | SRR13861534 | Other | lineage4.9 | None | ERR751569 | MDR-TB | lineage4.3.3 | None | SRR13861711 | Other | lineage4.9 | None | ERR176771 | Sensitive | lineage4.3.4.2.1 | None | SAMN02419540 | Other | lineage2.2.1 | None | SRR11349188 | MDR-TB | lineage4.1.2.1 | None | SRR1173384 | Other | lineage4.9 | None | SRR13861532 | Other | lineage4.9 | None | SRR13861692 | Other | lineage4.9 | None | SRR2101681 | Sensitive | lineage4.8 | None | SRR6397396 | HR-TB | lineage1.2.1.2.1 | None | ERR4769429 | Other | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | ERR560448 | HR-TB | La1.2.BCG;lineage4.9 | None | SRR13861504 | Other | lineage4.9 | None | SRR13861243 | Other | lineage4.9 | None | ERR560441 | Sensitive | La1.2.BCG;lineage4.9 | None | ERR751865 | Other | lineage1.1.1 | None | SRR13861394 | Other | lineage4.9 | None | SRR13861389 | Other | lineage4.9 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR13861533 | Other | lineage4.9 | None | SRR13861600 | Other | lineage4.9 | None | SRR13861617 | Other | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR13861161 | Other | lineage4.9 | None | ERR473298 | Sensitive | lineage4.6.2.2 | None | ERR7801178 | Other | lineage4.3.4.2.1 | None | SRR6397359 | Sensitive | lineage4.3.2 | ca | SRR13861470 | Other | lineage4.9 | None | SRR7444102 | Sensitive | lineage4.9 | None | SRR6982383 | Other | lineage4.3.2.1 | None | SRR1013637 | Sensitive | lineage2.2.2;lineage4 | None | ERR502484 | Sensitive | lineage4.9 | None | ERR2229358 | Other | lineage4.8 | None | SRR13861694 | Other | lineage4.9 | None | ERR3324373 | MDR-TB | lineage2.2.1 | None | SRR13861568 | Other | lineage4.9 | None | SRR13861219 | Other | lineage4.9 | None | SRR13861693 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR6397642 | Other | lineage4.4.1.1 | None | SRR1013636 | Sensitive | lineage2.2.2;lineage4 | None | SRR1049564 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | SRR13861515 | Other | lineage4.9 | None | SRR13861158 | Other | lineage4.9 | None | SRR13861403 | Other | lineage4.9 | None | SRR13861419 | Other | lineage4.9 | None | SRR13861499 | Other | lineage4.9 | None | SRR6152886 | HR-TB | lineage3 | None | SRR13861268 | Other | lineage4.9 | None | SRR13861329 | Other | lineage4.9 | None | ERR1144989 | Sensitive | lineage4.8 | None | SRR10993953 | Other | La1.6 | None | SRR13861696 | Other | lineage4.9 | None | ERR6149868 | Other | La1.8.2 | None | SRR13861702 | Other | lineage4.9 | None | ERR560443 | Sensitive | La1.2.BCG;lineage4.9 | None | SRR13861318 | Other | lineage4.9 | None | SRR9971378 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR2101628 | Other | lineage4.3.2.1 | None | SRR7444084 | Sensitive | lineage4.9 | None | SRR13861343 | Other | lineage4.9 | None | SRR13861735 | Other | lineage4.9 | None | SRR13861361 | Other | lineage4.9 | None | SRR13861589 | Other | lineage4.9 | None | SRR13861545 | Other | lineage4.9 | None | SRR13861627 | Other | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861707 | Other | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | SRR13861200 | Other | lineage4.9 | None | ERR987733 | Other | lineage4.6.1.1 | None | ERR2228873 | Other | lineage4.8 | None | SRR1049031 | Sensitive | lineage4.9 | None | ERR176464 | Other | lineage3.1.1 | None | ERR502489 | Sensitive | lineage4.9 | None | SRR13861297 | Other | lineage4.9 | None | SRR13861481 | Other | lineage4.9 | None | SRR13861464 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR1173361 | MDR-TB | lineage4.6.1.1 | None | ERR6201843 | Other | La1.2 | None | ERR502486 | Sensitive | lineage4.9 | None | SRR13861336 | Other | lineage4.9 | None | SRR13861384 | Other | lineage4.9 | None | SRR13861387 | Other | lineage4.9 | None | SRR5065436 | HR-TB | lineage2.2.1 | None | SRR6152854 | Other | lineage4.1.2.1 | None | SRR13861314 | Other | lineage4.9 | None | SRR13861507 | Other | lineage4.9 | None |
---|