Run ID: SRR1791899
Sample name:
Date: 03-04-2023 18:33:56
Number of reads: 141200
Percentage reads mapped: 24.94
Strain: La1.8.1
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
tlyA | 1918255 | c.319delC | frameshift_variant | 0.33 | capreomycin |
katG | 2154109 | p.Trp668* | stop_gained | 0.4 | isoniazid |
katG | 2155751 | p.Gly121Cys | missense_variant | 0.2 | isoniazid |
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
gid | 4408094 | p.Gly37* | stop_gained | 0.22 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5104 | c.-136C>A | upstream_gene_variant | 0.33 |
gyrB | 5419 | c.180T>C | synonymous_variant | 0.11 |
gyrB | 5462 | p.Val75Ile | missense_variant | 0.13 |
gyrB | 5731 | c.492C>A | synonymous_variant | 0.29 |
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrB | 5951 | p.Ala238Pro | missense_variant | 1.0 |
gyrB | 6005 | p.Gly256Cys | missense_variant | 0.14 |
gyrB | 6343 | p.Glu368Asp | missense_variant | 0.22 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7668 | p.Pro123Thr | missense_variant | 0.17 |
gyrA | 7770 | p.Asp157Asn | missense_variant | 0.14 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 8696 | c.1395G>T | synonymous_variant | 0.33 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9761 | c.2460A>G | synonymous_variant | 0.5 |
fgd1 | 490669 | c.-114C>T | upstream_gene_variant | 0.22 |
fgd1 | 490936 | p.Pro52Ser | missense_variant | 0.33 |
fgd1 | 491121 | c.339A>G | synonymous_variant | 0.18 |
fgd1 | 491677 | p.Gln299Lys | missense_variant | 0.29 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 620632 | p.Ala248Ser | missense_variant | 0.4 |
rpoB | 759741 | c.-66C>T | upstream_gene_variant | 0.25 |
rpoB | 760185 | p.Leu127Val | missense_variant | 0.2 |
rpoB | 760369 | p.Ser188Tyr | missense_variant | 0.29 |
rpoB | 761082 | p.Gly426Cys | missense_variant | 0.15 |
rpoB | 761459 | c.1653G>T | synonymous_variant | 0.33 |
rpoB | 762199 | p.Gly798Asp | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763649 | p.His94Asn | missense_variant | 0.4 |
rpoC | 764029 | p.Glu220Asp | missense_variant | 0.15 |
rpoC | 764875 | c.1506C>T | synonymous_variant | 0.22 |
rpoC | 766730 | p.Val1121Met | missense_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776293 | p.Ala730Thr | missense_variant | 0.25 |
mmpL5 | 776339 | c.2142C>T | synonymous_variant | 0.22 |
mmpL5 | 776496 | p.Leu662Pro | missense_variant | 0.14 |
mmpL5 | 778392 | p.Thr30Asn | missense_variant | 0.22 |
mmpR5 | 779399 | p.Arg137Gln | missense_variant | 0.22 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 800685 | c.-124A>G | upstream_gene_variant | 0.25 |
rplC | 801079 | p.Ala91Ser | missense_variant | 0.29 |
rplC | 801318 | p.Met170Ile | missense_variant | 0.17 |
fbiC | 1302885 | c.-46G>A | upstream_gene_variant | 0.33 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
fbiC | 1302937 | p.Gln3Lys | missense_variant | 0.29 |
fbiC | 1302956 | p.Ser9Tyr | missense_variant | 0.33 |
fbiC | 1303133 | p.Ala68Glu | missense_variant | 0.29 |
fbiC | 1303734 | c.804C>T | synonymous_variant | 0.18 |
fbiC | 1303738 | p.Arg270Cys | missense_variant | 0.22 |
fbiC | 1304519 | p.Ala530Glu | missense_variant | 0.4 |
fbiC | 1304565 | c.1635C>A | synonymous_variant | 0.5 |
Rv1258c | 1406099 | c.1242C>A | synonymous_variant | 0.2 |
Rv1258c | 1406415 | p.Pro309Gln | missense_variant | 0.17 |
Rv1258c | 1406484 | p.Pro286His | missense_variant | 0.25 |
atpE | 1460900 | c.-145T>C | upstream_gene_variant | 0.12 |
atpE | 1461191 | c.147G>A | synonymous_variant | 0.29 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472063 | n.218C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472222 | n.377G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472543 | n.699_700delCA | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472591 | n.746G>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472669 | n.824_825insTAGA | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472678 | n.833T>G | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472679 | n.834T>C | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472682 | n.839_843delGGGAT | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472697 | n.852T>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472700 | n.855C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472836 | n.991G>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472838 | n.993A>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472840 | n.995A>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472842 | n.997G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472844 | n.999C>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472845 | n.1000G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472860 | n.1015C>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472861 | n.1016G>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472872 | n.1027G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472873 | n.1028C>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472875 | n.1030T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472877 | n.1032T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472880 | n.1035_1036insA | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472953 | n.1108_1109insA | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472958 | n.1114delT | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472967 | n.1122G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472969 | n.1125_1126delCG | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472975 | n.1130T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472977 | n.1132G>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.61 |
rrs | 1473080 | n.1235C>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473091 | n.1246G>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473099 | n.1254T>G | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473126 | n.1282delG | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473131 | n.1286G>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473150 | n.1305T>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473161 | n.1316A>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473172 | n.1327T>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.69 |
rrl | 1473480 | n.-178C>A | upstream_gene_variant | 0.25 |
rrl | 1474669 | n.1012G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474747 | n.1090C>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474758 | n.1101G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474798 | n.1141C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474803 | n.1146G>A | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474804 | n.1147C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.76 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474839 | n.1182C>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1474892 | n.1235G>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474920 | n.1263G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475574 | n.1917C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475875 | n.2218G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476034 | n.2377C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476109 | n.2452C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476596 | n.2939C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476601 | n.2944G>A | non_coding_transcript_exon_variant | 0.5 |
fabG1 | 1673960 | p.Ala174Glu | missense_variant | 0.18 |
fabG1 | 1674040 | p.Gly201Trp | missense_variant | 0.2 |
fabG1 | 1674043 | p.Ala202Thr | missense_variant | 0.2 |
fabG1 | 1674053 | p.Phe205Ser | missense_variant | 0.2 |
inhA | 1674284 | p.Val28Glu | missense_variant | 0.2 |
inhA | 1674403 | c.203delA | frameshift_variant | 0.18 |
inhA | 1674424 | p.Ala75Ser | missense_variant | 0.2 |
inhA | 1674447 | c.250delG | frameshift_variant | 0.25 |
inhA | 1674863 | p.Gly221Asp | missense_variant | 0.5 |
rpsA | 1833559 | c.18C>A | synonymous_variant | 0.29 |
rpsA | 1834935 | p.Ala465Val | missense_variant | 0.29 |
tlyA | 1917771 | c.-169G>T | upstream_gene_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918150 | p.Val71Phe | missense_variant | 0.33 |
ndh | 2101803 | p.Leu414Met | missense_variant | 0.22 |
ndh | 2102045 | p.Ala333Glu | missense_variant | 0.5 |
ndh | 2102081 | p.Gly321Asp | missense_variant | 0.67 |
ndh | 2102107 | c.936C>A | synonymous_variant | 0.4 |
ndh | 2102139 | c.904C>A | synonymous_variant | 0.25 |
ndh | 2102193 | p.Arg284Trp | missense_variant | 1.0 |
ndh | 2102308 | c.735G>T | synonymous_variant | 0.4 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154457 | p.Ile552Thr | missense_variant | 0.22 |
katG | 2154540 | c.1572C>A | synonymous_variant | 0.15 |
katG | 2154596 | p.Glu506* | stop_gained | 0.2 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155275 | c.837C>A | synonymous_variant | 0.67 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
katG | 2156201 | c.-90G>T | upstream_gene_variant | 0.18 |
katG | 2156481 | c.-370G>T | upstream_gene_variant | 0.25 |
katG | 2156565 | c.-454C>T | upstream_gene_variant | 0.4 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2170113 | p.Ala167Glu | missense_variant | 0.25 |
PPE35 | 2170595 | p.Leu6Phe | missense_variant | 0.25 |
Rv1979c | 2222034 | c.1131G>T | synonymous_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288900 | c.342G>T | synonymous_variant | 0.29 |
pncA | 2289294 | c.-53G>T | upstream_gene_variant | 0.2 |
pncA | 2289330 | c.-89G>T | upstream_gene_variant | 0.17 |
pncA | 2289651 | c.-410T>C | upstream_gene_variant | 0.22 |
kasA | 2518038 | c.-77G>T | upstream_gene_variant | 0.2 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2518147 | c.33C>T | synonymous_variant | 0.22 |
kasA | 2519161 | c.1047G>A | synonymous_variant | 1.0 |
eis | 2714829 | c.504C>A | synonymous_variant | 0.15 |
eis | 2715029 | p.Ala102Ser | missense_variant | 0.17 |
eis | 2715113 | p.Glu74Lys | missense_variant | 0.4 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
folC | 2746825 | c.774G>T | synonymous_variant | 0.29 |
folC | 2746879 | p.Lys240Asn | missense_variant | 0.33 |
folC | 2747440 | p.Leu53Phe | missense_variant | 0.5 |
folC | 2747658 | c.-60C>T | upstream_gene_variant | 0.25 |
folC | 2747749 | c.-151C>A | upstream_gene_variant | 0.18 |
pepQ | 2859605 | p.Gly272Trp | missense_variant | 0.29 |
pepQ | 2859924 | c.495G>A | synonymous_variant | 0.67 |
pepQ | 2860605 | c.-187C>A | upstream_gene_variant | 0.2 |
ribD | 2986891 | c.54delC | frameshift_variant | 0.22 |
ribD | 2986994 | c.156C>A | synonymous_variant | 0.33 |
ribD | 2987332 | p.Cys165Phe | missense_variant | 0.5 |
Rv2752c | 3065101 | p.Thr364Ser | missense_variant | 0.25 |
Rv2752c | 3065982 | c.210G>A | synonymous_variant | 0.33 |
thyX | 3067787 | p.Lys53Asn | missense_variant | 0.22 |
thyA | 3074188 | p.Gly95Val | missense_variant | 0.33 |
ald | 3086693 | c.-127G>T | upstream_gene_variant | 0.15 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086777 | c.-43A>G | upstream_gene_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
ald | 3087382 | p.Asn188Ser | missense_variant | 0.22 |
ald | 3087653 | c.834A>G | synonymous_variant | 0.4 |
fbiD | 3339093 | c.-25G>A | upstream_gene_variant | 0.5 |
fbiD | 3339273 | c.156T>G | synonymous_variant | 0.4 |
Rv3083 | 3448589 | p.Asp29Val | missense_variant | 0.67 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
Rv3083 | 3449195 | p.Gly231Val | missense_variant | 0.29 |
Rv3083 | 3449840 | p.Arg446Leu | missense_variant | 0.14 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474002 | c.-5C>A | upstream_gene_variant | 0.18 |
fprA | 3474036 | c.30C>A | synonymous_variant | 0.18 |
fprA | 3474038 | p.Ser11Phe | missense_variant | 0.18 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475078 | p.Gly358Arg | missense_variant | 0.33 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fprA | 3475251 | c.1245G>A | synonymous_variant | 0.2 |
fprA | 3475329 | c.1323G>T | synonymous_variant | 0.25 |
Rv3236c | 3613181 | c.-65C>A | upstream_gene_variant | 0.17 |
fbiA | 3640421 | c.-122C>A | upstream_gene_variant | 0.17 |
fbiB | 3640998 | c.-537C>A | upstream_gene_variant | 0.2 |
fbiB | 3641160 | c.-375C>T | upstream_gene_variant | 0.25 |
fbiA | 3641222 | p.Pro227His | missense_variant | 0.29 |
fbiB | 3641304 | c.-231C>A | upstream_gene_variant | 0.29 |
fbiA | 3641406 | p.Trp288Cys | missense_variant | 0.22 |
fbiB | 3641609 | c.75C>T | synonymous_variant | 0.2 |
fbiB | 3642287 | c.753G>T | synonymous_variant | 0.67 |
fbiB | 3642681 | p.Ala383Ser | missense_variant | 0.5 |
alr | 3841226 | c.195C>A | synonymous_variant | 0.5 |
alr | 3841366 | p.Gly19Ser | missense_variant | 0.25 |
alr | 3841437 | c.-17G>T | upstream_gene_variant | 0.2 |
rpoA | 3878058 | c.450G>A | synonymous_variant | 0.22 |
ddn | 3987033 | p.Leu64Ile | missense_variant | 0.4 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4038408 | p.Pro766Gln | missense_variant | 0.22 |
clpC1 | 4038474 | p.Ser744Ile | missense_variant | 0.25 |
clpC1 | 4038479 | c.2226C>A | synonymous_variant | 0.25 |
clpC1 | 4038560 | c.2145C>T | synonymous_variant | 0.29 |
clpC1 | 4040173 | p.Leu178Ile | missense_variant | 0.17 |
clpC1 | 4040557 | p.Glu50* | stop_gained | 0.15 |
panD | 4043927 | p.His119Asn | missense_variant | 0.4 |
embC | 4239704 | c.-159C>A | upstream_gene_variant | 0.18 |
embC | 4239726 | c.-137G>T | upstream_gene_variant | 0.17 |
embC | 4239761 | c.-102C>T | upstream_gene_variant | 0.18 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4243746 | p.Gly172Ser | missense_variant | 0.67 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embA | 4244944 | p.Ala571Asp | missense_variant | 0.67 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247277 | p.Pro255Gln | missense_variant | 0.17 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4248564 | p.Ala684Asp | missense_variant | 0.33 |
aftB | 4267337 | c.1500C>T | synonymous_variant | 0.25 |
aftB | 4267427 | c.1410G>C | synonymous_variant | 0.25 |
aftB | 4267438 | p.Arg467Trp | missense_variant | 0.25 |
aftB | 4267815 | p.Ala341Glu | missense_variant | 0.33 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326632 | p.His281Leu | missense_variant | 0.25 |
ethA | 4327178 | p.Arg99Pro | missense_variant | 0.25 |
ethR | 4328194 | p.Arg216Cys | missense_variant | 0.2 |
ethA | 4328261 | c.-788C>A | upstream_gene_variant | 0.2 |
ethA | 4328314 | c.-841G>T | upstream_gene_variant | 0.2 |
whiB6 | 4338276 | c.246C>A | synonymous_variant | 0.5 |
whiB6 | 4338528 | c.-7A>G | upstream_gene_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4408127 | c.76T>C | synonymous_variant | 0.22 |