EBG00000313339 - n.2539C>A
Drug resistance types
178 Sensitive
39 RR-TB
32 HR-TB
70 MDR-TB
28 Pre-XDR-TB
1 XDR-TB
343 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.2 | 7 |
| lineage3 | 41 |
| La1.8.1 | 38 |
| La1.7.1 | 6 |
| lineage2.2.1 | 148 |
| lineage2.2.2 | 10 |
| lineage2.2.2;lineage2.2.1 | 1 |
| lineage4.2.2 | 2 |
| lineage4.4.2 | 4 |
| lineage4.5 | 5 |
| lineage4.1.1.3 | 14 |
| lineage4.1.2.1 | 26 |
| lineage4.8 | 22 |
| lineage3.1.2 | 5 |
| lineage6 | 1 |
| 19 | |
| lineage4.1.1 | 14 |
| lineage4.3.2.1 | 21 |
| lineage4.3.4.2.1 | 9 |
| lineage4.9.1 | 1 |
| lineage4.1.2;lineage3.1 | 1 |
| lineage4.4.1.1.1 | 6 |
| lineage4.4.1.1 | 22 |
| lineage4.3.3 | 19 |
| lineage1.1.3.2 | 5 |
| lineage2.2.1.1 | 10 |
| lineage4.3.4.1 | 6 |
| lineage4.9 | 71 |
| lineage4.1.2 | 9 |
| lineage3.1.3 | 2 |
| lineage1.2.1.2.1 | 3 |
| lineage1.1.3 | 2 |
| lineage4 | 11 |
| lineage4.7 | 7 |
| lineage1.2.2.2 | 6 |
| lineage1.2.1.1 | 1 |
| lineage4.8;lineage4.2.1.1 | 1 |
| lineage4.3.4.2 | 7 |
| lineage3.1 | 2 |
| lineage4.2 | 3 |
| lineage4.1.1.3.1 | 5 |
| lineage4.8.2 | 3 |
| lineage4.3.3;lineage3 | 1 |
| lineage4.3.1.1 | 5 |
| lineage6.1.3 | 3 |
| La1.2 | 3 |
| lineage3.1.1 | 11 |
| lineage1.2.2.1 | 2 |
| lineage4.2.1 | 4 |
| lineage4.2.2.2 | 4 |
| lineage4.2.2.2;lineage3 | 1 |
| lineage4.8.1 | 4 |
| lineage3.1.2.2 | 2 |
| lineage4;lineage3 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.9;lineage3 | 1 |
| lineage4.6.5 | 1 |
| lineage4.3.2 | 2 |
| lineage4.6.2.2 | 4 |
| lineage4.1.2.1;lineage2.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage2.2 | 5 |
| lineage4.4 | 1 |
| lineage1 | 1 |
| lineage4;lineage2.2.1 | 1 |
| lineage4.4.1 | 1 |
| lineage4.9;lineage4.3.4.1 | 1 |
| lineage4.3 | 2 |
| lineage5.1.4 | 1 |
| lineage4.9;La1.8.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage6.3.1 | 2 |
| lineage4.1 | 1 |
| lineage4.1.4 | 1 |
| lineage6.2.2 | 2 |
| lineage4;La1 | 1 |
| La1.8 | 1 |
| lineage4.9;La1.8 | 1 |
| La1 | 2 |
| lineage6.1.1 | 2 |
| La1.3 | 5 |
| lineage4.2.2.1 | 1 |
| lineage4.6 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.8;lineage4.4.1.1.1 | 1 |
| La1.6 | 1 |
| lineage1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.9;lineage4.4.2 | 1 |
| La1.4 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 691 |
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR17406743 | HR-TB | lineage1.1.2 | None | SRR17406750 | Other | lineage1.1.2 | None | SRR17856664 | Sensitive | lineage3 | None | SRR1791899 | HR-TB | La1.8.1 | None | SRR1791909 | Other | La1.7.1 | None | SRR1792247 | Other | La1.7.1 | None | SRR1792378 | Other | La1.8.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002902 | Other | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002907 | MDR-TB | lineage2.2.1 | None | SRR18002915 | Sensitive | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002932 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002954 | Other | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002997 | Other | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18149430 | Sensitive | lineage4.1.1.3 | None | SRR18149443 | Sensitive | lineage3 | None | SRR18213726 | Other | lineage3 | None | SRR18149455 | Sensitive | lineage4.1.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR18213800 | Other | lineage3.1.2 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18391772 | Other | La1.7.1 | None | SRR18911000 | Sensitive | lineage2.2.1 | None | SRR18391683 | Other | La1.7.1 | None | SRR18911138 | Other | lineage3 | None | SRR19304094 | Other | lineage6 | None | SRR19303907 | Other | lineage4.8 | None | SRR20969951 | Other | lineage4.4.2 | None | SRR19576436 | Sensitive | None | SRR19304095 | Other | lineage4.1.2.1 | None | SRR20969923 | Other | lineage2.2.1 | None | SRR2101617 | Other | lineage4.1.1 | None | SRR2101312 | MDR-TB | lineage2.2.1 | None | SRR2101529 | Sensitive | lineage4.3.2.1 | None | SRR2101540 | Sensitive | lineage4.3.2.1 | None | SRR2101595 | RR-TB | lineage4.3.4.2.1 | None | SRR2101505 | MDR-TB | lineage4.9.1 | None | SRR2101628 | Other | lineage4.3.2.1 | None | SRR2101625 | Other | lineage4.1.2;lineage3.1 | None | SRR2101659 | Other | lineage4.4.1.1.1 | None | SRR2101637 | RR-TB | lineage4.4.1.1 | None | SRR2101662 | Sensitive | lineage4.3.3 | None | SRR2101663 | Other | lineage1.1.3.2 | None | SRR2101666 | Sensitive | lineage4.8 | None | SRR2101678 | Sensitive | lineage4.4.1.1.1 | None | SRR2101684 | Other | lineage2.2.1.1 | None | SRR2101681 | Sensitive | lineage4.8 | None | SRR2101689 | Other | lineage4.3.4.1 | None | SRR2101685 | Sensitive | lineage4.9 | None | SRR2101693 | Sensitive | lineage4.1.2 | None | SRR2101711 | Sensitive | lineage2.2.1 | None | SRR2101709 | Sensitive | lineage4.1.1.3 | None | SRR2101774 | Sensitive | lineage2.2.1 | None | SRR2101773 | Sensitive | lineage4.3.4.2.1 | None | SRR2101786 | Sensitive | lineage4.4.1.1 | None | SRR2101802 | Sensitive | lineage4.4.1.1 | None | SRR21240038 | Other | lineage4.1.2.1 | None | SRR2101803 | Sensitive | lineage4.3.3 | None | SRR2101816 | Other | lineage4.8 | None | SRR21686114 | Other | lineage3.1.3 | None | SRR21675637 | Sensitive | lineage4.3.3 | None | SRR21675949 | Other | lineage4.3.3 | None | SRR21676318 | Sensitive | lineage2.2.1 | None | SRR21676929 | Other | lineage1.2.1.2.1 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SRR21714045 | HR-TB | lineage2.2.1 | None | SRR21711124 | Other | lineage1.1.3 | None | SRR21728710 | Other | lineage4.1.1.3 | None | SRR21728339 | Other | lineage3 | None | SRR21737226 | Sensitive | lineage4.5 | None | SRR21728726 | HR-TB | lineage1.2.1.2.1 | None | SRR22175227 | Pre-XDR-TB | lineage3 | None | SRR21764250 | Other | lineage4.9 | None | SRR22048392 | Other | lineage4.8 | None | SRR8692825 | Other | lineage4.9 | None | SRR22424910 | HR-TB | lineage4.5 | None | ERR1465744 | Sensitive | lineage4.1.2.1 | None | ERR2179785 | Sensitive | lineage4.5 | None | SRR3675474 | Other | lineage4.1.1 | None | SRR3675213 | Other | lineage4 | None | SRR3675485 | Other | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675491 | Other | lineage4.7 | None | SRR3105736 | Other | lineage1.2.2.2 | None | SRR3675496 | Other | lineage4.1.1.3 | gb | SRR3675230 | RR-TB | lineage3 | None | ERR1665403 | MDR-TB | lineage2.2.1 | None | ERR1665405 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675245 | Other | lineage4.1.2.1 | None | SRR3675256 | Other | lineage4.7 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR3675276 | Other | lineage4.1.2.1 | gb | SRR3675282 | Other | None | SRR3675287 | Other | lineage3 | None | ERR2179834 | Other | lineage3 | None | ERR2027252 | Other | lineage4.8;lineage4.2.1.1 | None | SRR3675288 | Other | lineage3 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR2179857 | RR-TB | lineage4 | None | SRR3675361 | Other | lineage1.1.2 | gb | SRR3675447 | Other | lineage3 | None | SRR3675451 | Sensitive | lineage4.1.2.1 | None | SRR3675452 | Other | lineage3 | None | ERR181905 | Sensitive | lineage2.2.1 | mw | ERR2446456 | HR-TB | lineage4.4.1.1 | None | SRR3675512 | Other | lineage2.2.1 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2027256 | Other | lineage4.1.2 | None | ERR2027293 | Other | lineage4.3.4.2 | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675565 | Other | lineage3 | None | SRR3675552 | RR-TB | lineage4.9 | None | SRR3675556 | Other | lineage3 | None | ERR2179737 | HR-TB | lineage4.2 | None | ERR2041685 | MDR-TB | lineage2.2.1 | None | ERR2229358 | Other | lineage4.8 | None | ERR2179850 | Sensitive | lineage4 | None | SRR5074094 | HR-TB | lineage2.2.1.1 | None | SRR5341378 | Other | lineage3 | in | SRR4037619 | Sensitive | lineage4.3.2.1 | None | SRR5067459 | HR-TB | lineage4.2 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007180 | Other | None | ERR4818629 | Other | lineage4.3.3;lineage3 | gb | SRR6045422 | Other | lineage4.3.1.1 | None | ERR2514753 | Other | lineage3 | None | SRR8380862 | MDR-TB | lineage2.2.1.1 | in | ERR2693238 | HR-TB | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6045445 | Other | lineage4.3.1.1 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR5486086 | Other | La1.2 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR5526841 | MDR-TB | lineage2.2.1.1 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR2660490 | Sensitive | lineage4.3.2.1 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045553 | RR-TB | lineage4.9 | None | ERR2660498 | Sensitive | lineage4.3.4.2.1 | None | ERR2660495 | Sensitive | lineage1.2.2.2 | None | ERR2660505 | Other | lineage1.2.2.1 | None | ERR2660524 | HR-TB | lineage1.1.3.2 | None | ERR2660545 | Sensitive | lineage4.3.2.1 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045614 | Other | lineage4.8 | None | SRR6045618 | Other | lineage3.1.2 | None | SRR6045705 | Other | lineage4.9 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045683 | Other | lineage3.1.2 | None | SRR6045726 | Other | lineage3 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045743 | Other | lineage3 | None | SRR6045749 | Other | lineage4.1.1 | gb | SRR6045778 | Other | lineage3.1 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818610 | Other | lineage3 | None | SRR5818666 | Other | lineage3 | None | SRR5818685 | Sensitive | None | SRR6044841 | Other | lineage4.9 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR6045849 | Other | lineage4.4.1.1 | None | SRR6044817 | Other | lineage3 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044857 | Other | lineage4.8.1 | gb | SRR6045909 | Other | lineage4.8 | None | SRR6045925 | Other | lineage4.2 | None | SRR6044888 | Other | lineage4.1.1.3.1 | None | SRR6044904 | Other | lineage3 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044925 | Sensitive | lineage4.9 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044936 | Other | lineage4 | None | SRR6044993 | Other | lineage3 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045138 | Other | lineage3.1.1 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6045036 | Other | lineage4;lineage3 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6045986 | Other | lineage3 | None | SRR6046020 | Other | lineage3 | None | SRR6045164 | Other | lineage4.1.2.1 | None | SRR6046189 | Other | lineage4.8 | None | SRR6045178 | Other | lineage3 | None | SRR6045199 | Other | lineage2.2.1 | None | SRR6045205 | Sensitive | lineage4.9 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6045289 | Other | None | SRR6045295 | Other | lineage4.7 | None | SRR6046239 | Other | lineage4.9;lineage3 | None | SRR6046246 | Other | lineage3 | None | SRR1735629 | Other | lineage1.2.2.2 | gb | SRR6046291 | Other | lineage3 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046273 | Other | lineage3.1.2 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR2851354 | RR-TB | lineage4.9 | None | ERR2851359 | Other | lineage4.9 | None | ERR2851371 | Other | lineage4.9 | None | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6046541 | Other | lineage4.9 | None | SRR6046457 | Other | lineage3 | gb | SRR6046481 | Other | lineage4.1.1.3.1 | None | SRR6046482 | HR-TB | None | SRR6046517 | Other | lineage4.8 | None | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046534 | Other | lineage1.1.2 | None | SRR6046607 | Other | lineage3 | None | SRR6046815 | Other | lineage3 | None | SRR6046634 | Other | lineage3 | gb | SRR6046655 | Other | lineage4.1.2.1 | None | SRR6046729 | Other | None | SRR6046739 | Other | lineage1.1.2 | None | SRR6046752 | Sensitive | lineage4.2.2.2 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046761 | Other | lineage3 | gb | SRR6046764 | Other | lineage4.2.2 | None | SRR6046790 | Other | lineage4.7 | None | SRR6511600 | MDR-TB | lineage4.3.4.2 | None | SRR6046824 | HR-TB | None | SRR6367397 | Other | lineage4.1.2.1 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR3148546 | Other | lineage4.3.2 | None | SRR6982078 | Sensitive | None | ERR502485 | Sensitive | lineage4.9 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR502482 | Sensitive | lineage4.9 | None | ERR502483 | Sensitive | lineage4.9 | None | ERR502484 | Sensitive | lineage4.9 | None | ERR502490 | Sensitive | lineage4.9 | None | ERR502486 | Sensitive | lineage4.9 | None | ERR502489 | Sensitive | lineage4.9 | None | ERR502492 | Sensitive | lineage4.9 | None | ERR502498 | Sensitive | lineage4.9 | None | ERR502493 | Sensitive | lineage4.9 | None | ERR4863405 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR502497 | Sensitive | lineage4.9 | None | SRR6856094 | Other | lineage2.2.1 | None | SRR6982484 | Sensitive | lineage3.1.1 | None | SRR6982090 | RR-TB | lineage4.4.1.1 | None | SRR6856087 | Sensitive | lineage4 | None | SRR6982088 | Other | lineage4.1.1.2 | None | SRR6856119 | Sensitive | lineage2.2.1 | None | SRR6982092 | Other | lineage4.3.2.1 | None | SRR6982100 | Sensitive | lineage4.4.1.1.1 | None | SRR6896162 | Sensitive | lineage4.9 | None | SRR6982410 | Other | lineage4.8.1 | None | SRR6982102 | Other | lineage2.2.1 | None | SRR6896178 | Sensitive | lineage2.2.1 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR6982138 | Sensitive | lineage4 | None | SRR6982106 | Sensitive | lineage4.8 | None | SRR6982115 | Sensitive | lineage4 | None | SRR6982414 | Sensitive | lineage4.9 | None | SRR6982139 | Sensitive | lineage4.9 | None | SRR6982140 | Other | lineage2.2 | None | SRR6982508 | Sensitive | lineage4.9 | None | SRR6896255 | Sensitive | lineage4.3.3 | None | SRR6982148 | Sensitive | lineage2.2.1 | None | SRR6982418 | Sensitive | lineage4.1.1.3 | None | SRR6982146 | Sensitive | lineage4.1.1.3 | None | SRR6982419 | Other | lineage4.8 | None | SRR6982168 | Sensitive | lineage4.4.1.1 | None | SRR6896340 | HR-TB | lineage4.4.1.1 | None | SRR6896339 | MDR-TB | lineage2.2.1 | None | SRR6982174 | Sensitive | lineage4.3.3 | None | SRR6896348 | Sensitive | lineage4.1.2.1 | None | SRR6982175 | Other | lineage1.1.3.2 | None | SRR6982178 | Sensitive | lineage2.2 | None | SRR6982430 | Other | lineage4.3.4.2.1 | None | SRR6982190 | Sensitive | lineage4.3.3 | None | SRR6982205 | Sensitive | lineage1.2.2.1 | None | SRR6982195 | RR-TB | lineage4.4 | None | SRR6982196 | Sensitive | None | SRR6982427 | Sensitive | lineage4.1.1 | None | SRR6982198 | HR-TB | lineage1 | None | SRR6982257 | RR-TB | lineage4.1.2.1 | None | SRR6982213 | Sensitive | lineage4.3.2.1 | None | SRR6982227 | Other | lineage4.1.1 | None | SRR6982229 | Sensitive | lineage2.2.1 | None | SRR6982448 | Sensitive | lineage4;lineage2.2.1 | None | SRR6982456 | Sensitive | lineage4.1.1.3 | None | SRR6982272 | Sensitive | lineage4.9 | None | SRR6982275 | Other | lineage2.2.1 | None | SRR6982292 | Other | lineage4.4.1.1.1 | None | SRR6982297 | Sensitive | lineage4.1.1 | None | SRR6982465 | Sensitive | lineage4.3.4.2 | None | SRR6982313 | Sensitive | lineage4.3.4.2.1 | None | SRR6982328 | HR-TB | lineage3.1.1 | None | SRR6982334 | Sensitive | lineage4.4.1.1 | None | SRR6982332 | Sensitive | lineage4.4.1.1 | None | SRR6982337 | Sensitive | lineage4.7 | None | SRR6982342 | Sensitive | lineage4.3.2.1 | None | SRR6982472 | Sensitive | lineage4.4.1.1 | None | SRR6807688 | Pre-XDR-TB | lineage4.2.1 | None | SRR6981912 | Sensitive | None | SRR6982349 | Sensitive | lineage2.2.1 | None | ERR5162108 | Other | La1.8.1 | None | SRR6981918 | Sensitive | lineage4.4.1 | None | SRR6824324 | Other | lineage4.5 | None | SRR6824357 | Pre-XDR-TB | lineage4.4.2 | None | SRR6855718 | Sensitive | lineage4.8 | None | SRR6855721 | Sensitive | lineage4.3.2.1 | None | SRR6981922 | Sensitive | lineage4.3.2.1 | None | SRR6982362 | Other | lineage4.3.2.1 | None | SRR6982363 | Sensitive | lineage4.3.3 | None | SRR6981948 | Sensitive | lineage4.3.2.1 | None | SRR6981962 | Sensitive | None | SRR6981968 | Sensitive | lineage4.1.2 | None | SRR6982371 | Sensitive | lineage4.1.1 | None | SRR6981966 | Other | lineage2.2.1 | None | SRR6981975 | Sensitive | lineage4.7 | None | SRR6982471 | Sensitive | lineage2.2.1 | None | SRR6981981 | Other | lineage4.3.3 | None | SRR6981978 | Sensitive | lineage4.3.4.2.1 | None | SRR6855828 | Other | lineage4.3.2.1 | None | SRR6981977 | Sensitive | lineage2.2.1 | None | SRR6981983 | Sensitive | lineage3.1.1 | None | SRR6982383 | Other | lineage4.3.2.1 | None | SRR6981993 | Other | lineage4.3.2.1 | None | SRR6855851 | Sensitive | lineage4.3.4.2.1 | None | SRR6824519 | MDR-TB | lineage2.2.1 | cn | SRR6981982 | Sensitive | lineage4.1.2.1 | None | SRR6982011 | Other | lineage4.1.1 | None | SRR6982385 | Sensitive | lineage4.1.2 | None | SRR6982014 | Other | lineage4.1.1 | None | SRR6982022 | Sensitive | lineage4.4.1.1 | None | SRR6855915 | Sensitive | lineage4.9 | None | SRR6855917 | Other | lineage4.8 | None | SRR6824603 | Sensitive | lineage4.4.2 | None | SRR6982026 | Sensitive | lineage4.3.3 | None | SRR6982035 | Sensitive | lineage4.9 | None | SRR6982037 | Sensitive | lineage4.1.1 | None | SRR6824624 | Sensitive | lineage2.2.1 | None | SRR6982043 | Sensitive | lineage4.4.1.1 | None | SRR6982398 | MDR-TB | lineage2.2 | None | SRR6982048 | HR-TB | lineage4.3.2.1 | None | SRR6855963 | RR-TB | lineage2.2.1 | None | SRR6855967 | Sensitive | lineage4.1.2 | None | SRR6982050 | Sensitive | lineage4.3.4.1 | None | SRR6982053 | Sensitive | lineage4.9;lineage4.3.4.1 | None | SRR6982057 | Pre-XDR-TB | lineage4.3 | None | SRR6982056 | Sensitive | lineage4.3.4.2.1 | None | SRR6982058 | HR-TB | lineage2.2.1 | None | SRR6982064 | Sensitive | lineage4.1.1 | None | SRR6982066 | Other | lineage4.3.2.1 | None | SRR6982070 | RR-TB | None | SRR6982075 | Sensitive | lineage3 | None | SRR6982076 | Sensitive | lineage4.9 | None | SRR6982405 | Sensitive | None | SRR6856032 | Sensitive | lineage2.2.1 | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | ERR502513 | Sensitive | lineage5.1.4 | gh | ERR5087912 | Other | La1.8.1 | None | ERR5087606 | Other | La1.8.1 | None | ERR5162118 | Other | La1.8.1 | None | ERR5162133 | Other | La1.8.1 | None | ERR5311076 | Other | La1.8.1 | None | ERR5311080 | Other | La1.8.1 | None | ERR5311086 | Sensitive | lineage4.9;La1.8.1 | None | ERR5311088 | Other | La1.8.1 | None | SRR6982510 | Sensitive | lineage4;lineage2 | None | SRR6982509 | Sensitive | lineage4.3.2.1 | None | SRR6982514 | Sensitive | lineage4.3.3 | None | SRR6982558 | Other | lineage4.3.4.2 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR9971243 | Pre-XDR-TB | lineage4.3.3 | None | SRR7131068 | Other | lineage4.8 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131163 | Other | lineage2.2.1 | None | SRR8217919 | HR-TB | lineage2.2.1 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7131257 | Other | lineage6.3.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7131294 | Other | lineage6.3.1 | None | SRR9971351 | RR-TB | lineage2.2.1 | None | SRR7516395 | MDR-TB | lineage2.2.1 | None | SRR7131201 | Other | lineage4.8 | None | SRR9971052 | MDR-TB | lineage4.4.1.1 | None | SRR9970983 | MDR-TB | lineage4.3.3 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR9971029 | MDR-TB | lineage2.2.2 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR9971147 | RR-TB | lineage2.2.1 | None | ERR1063855 | Other | lineage4 | None | SRR9971195 | MDR-TB | lineage4.3.3 | None | ERR10219868 | Other | lineage4.1.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR10796625 | RR-TB | lineage4.4.1.1 | None | ERR10796595 | Other | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR1144989 | Sensitive | lineage4.8 | None | ERR137226 | MDR-TB | lineage2.2.1 | None | ERR144568 | Pre-XDR-TB | None | ERR3261351 | Other | lineage4.9 | None | ERR3261359 | Other | lineage4.9 | None | ERR3261389 | Other | lineage4.9 | None | ERR3283028 | Other | None | ERR3324328 | MDR-TB | lineage2.2.1 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283053 | Other | lineage4.9 | None | ERR3324329 | HR-TB | lineage4.1.1.3 | None | ERR3324325 | MDR-TB | lineage4.6.2.2 | None | ERR3324331 | MDR-TB | lineage4.3.4.1 | None | ERR3324345 | RR-TB | lineage4.1 | None | ERR3324354 | Sensitive | lineage4.8 | None | ERR3324347 | Sensitive | lineage4.1.2.1 | None | ERR3324351 | MDR-TB | lineage4.1.4 | None | ERR3324373 | MDR-TB | lineage2.2.1 | None | ERR3324362 | HR-TB | lineage4.1.2.1 | None | ERR4024588 | Other | lineage4.1.1 | None | ERR3324375 | Other | lineage1.1.3.2 | None | ERR3335798 | MDR-TB | lineage2.2.1 | None | ERR3439285 | Sensitive | lineage4.9 | None | ERR3797007 | Other | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3804140 | Sensitive | lineage6.2.2 | None | ERR4178135 | Sensitive | lineage4.3.4.1 | None | ERR4132447 | HR-TB | lineage4 | None | ERR4187641 | Other | lineage4;La1 | None | ERR4178216 | Sensitive | lineage4.1.2.1 | None | ERR4187604 | RR-TB | La1.8.1 | None | ERR4187800 | Other | La1.8.1 | None | ERR4187720 | Other | La1.8.1 | None | ERR4187916 | Other | La1.8.1 | None | ERR4187819 | Other | La1.8 | None | ERR4187921 | Other | None | ERR4187952 | Other | La1.8.1 | None | ERR4187993 | Other | La1.8.1 | None | ERR4187995 | Other | La1.8.1 | None | ERR4188010 | Other | La1.8.1 | None | ERR4188187 | Other | La1.8.1 | None | ERR4188021 | Other | La1.8.1 | None | ERR4188035 | Other | La1.8.1 | None | ERR4188160 | Other | La1.8.1 | None | ERR4188202 | Other | La1.8.1 | None | ERR4188213 | HR-TB | La1.8.1 | None | ERR4188255 | Other | lineage4.9;La1.8 | None | ERR4188253 | Other | La1.8.1 | None | ERR4188254 | Other | La1.8.1 | None | ERR4769412 | Sensitive | lineage4.9 | None | ERR4188273 | Other | La1.8.1 | None | ERR4188330 | Other | La1.8.1 | None | ERR4188352 | Other | La1.8.1 | None | ERR4188372 | RR-TB | La1.8.1 | None | ERR4188369 | Other | La1.8.1 | None | ERR4188375 | Sensitive | lineage4.9 | None | ERR4188381 | Other | La1.8.1 | None | ERR4188395 | Other | La1.8.1 | None | ERR4188396 | Sensitive | La1 | None | ERR4192392 | Other | lineage6.1.1 | None | ERR4192398 | Other | lineage6.1.3 | None | ERR4192413 | Other | lineage6.1.1 | None | ERR4627379 | Other | La1.8.1 | None | ERR4627392 | Other | La1.8.1 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769424 | Sensitive | lineage4.9 | None | ERR4769428 | Other | La1.3 | None | ERR4769429 | Other | lineage4.9 | None | ERR4769467 | Sensitive | lineage4.9 | None | ERR4769462 | Other | La1.3 | None | ERR4769472 | Other | lineage4.9 | None | ERR4769470 | Sensitive | lineage4.9 | None | ERR4769471 | Other | La1.3 | None | ERR4769482 | Sensitive | La1 | None | ERR4769505 | Other | lineage4.9 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769507 | Sensitive | lineage4.9 | None | ERR4769525 | Sensitive | lineage4.9 | None | ERR4769537 | Sensitive | lineage4.9 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR4769546 | Other | La1.3 | None | ERR4808980 | Pre-XDR-TB | lineage2.2.2 | None | ERR4769549 | Sensitive | lineage4.9 | None | ERR4772230 | Other | La1.2 | None | ERR5864323 | MDR-TB | lineage4.2.1 | None | ERR5865118 | MDR-TB | lineage2.2.1 | None | ERR5864322 | MDR-TB | lineage4.2.1 | None | ERR5865337 | MDR-TB | lineage2.2 | None | ERR5865119 | MDR-TB | lineage2.2.1 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR5865339 | MDR-TB | lineage2.2.1 | None | ERR6197034 | Other | lineage4.9 | None | ERR6865839 | Sensitive | lineage4.3.4.1 | None | ERR6197032 | Other | lineage4.9 | None | ERR6865691 | Other | lineage4.1.1 | None | ERR6865773 | Sensitive | lineage4.1.2.1 | None | ERR6362473 | MDR-TB | lineage2.2.2 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR6866186 | Sensitive | lineage4.8 | None | ERR6866821 | Sensitive | lineage4.1.2.1 | None | ERR8774092 | Sensitive | lineage4.1.1.3 | None | ERR7737918 | MDR-TB | lineage4.2.2.1 | None | ERR7801238 | Sensitive | lineage4.8.1 | None | ERR7821182 | Other | lineage1.1.3.2 | None | ERR779680 | Sensitive | lineage4.3.4.2.1 | None | ERR7911622 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025347 | Sensitive | lineage4.9 | None | ERR9117696 | Other | lineage4.1.2.1 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117675 | Other | lineage4.8 | None | ERR9117676 | Other | lineage4.2.2.2 | None | ERR9117681 | Other | lineage4.3.3 | None | ERR9117695 | Other | lineage4.1.2.1 | None | ERR9117729 | Other | lineage3 | None | ERR9117714 | Other | lineage3.1.2 | None | ERR9117725 | Other | lineage4.1.1 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117842 | Sensitive | lineage3 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117841 | Other | lineage4.8.2 | None | SRR10315603 | MDR-TB | lineage4.8 | None | ERR9787079 | Other | lineage6.1.3 | None | ERR9787142 | Sensitive | lineage6.2.2 | None | ERR9992612 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR987757 | MDR-TB | lineage4.6.1.2 | None | SRR10272569 | Sensitive | lineage4.4.1.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315486 | MDR-TB | lineage2.2.1 | None | SRR10315587 | RR-TB | lineage4.1.1.3 | None | SRR10315728 | MDR-TB | lineage4.8;lineage4.4.1.1.1 | None | SRR10315701 | MDR-TB | lineage4.3.3 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | SRR10482948 | Other | La1.8.1 | None | SRR10869051 | HR-TB | lineage2.2.1 | None | SRR10808496 | Sensitive | lineage4.3.2 | None | SRR10869268 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR10869074 | Sensitive | lineage2.2.1.1 | None | SRR10869086 | Pre-XDR-TB | lineage2.2.2 | None | SRR10869160 | Sensitive | lineage2.2.1.1 | None | SRR10869302 | MDR-TB | lineage4.3.2.1 | None | SRR10869292 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342656 | MDR-TB | lineage2.2.1 | None | SRR10993957 | Other | La1.6 | None | SRR11294512 | Other | La1.8.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11349159 | MDR-TB | lineage2.2.2 | None | SRR11349148 | RR-TB | lineage2.2.1 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | SRR11972274 | RR-TB | lineage1.2.1.2.1 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | SRR11349205 | MDR-TB | lineage2.2.1 | None | SRR1173195 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1181319 | Other | lineage2.2.1 | None | SRR1187028 | Sensitive | lineage4.1.2 | ca | SRR11871419 | Pre-XDR-TB | lineage2.2.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR1181136 | Sensitive | lineage2.2 | None | SRR11972407 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972394 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR11972387 | MDR-TB | lineage2.2.1 | None | SRR11972420 | MDR-TB | lineage2.2.1 | None | SRR12199472 | Sensitive | lineage1.1 | None | SRR12199387 | Other | lineage1.1.3 | None | SRR12199461 | Sensitive | lineage1.1.3.1 | None | SRR12199468 | Sensitive | lineage4.9;lineage4.4.2 | None | SRR12882669 | RR-TB | lineage3.1.1 | None | SRR12882768 | RR-TB | lineage3.1.1 | None | SRR13199746 | Other | La1.7.1 | None | SRR12931719 | Other | lineage4.3.4.2 | None | SRR13199734 | Other | La1.2 | None | SRR13199739 | Other | La1.7.1 | None | SRR13861372 | Other | lineage4.9 | None | SRR13423641 | MDR-TB | lineage2.2.1 | None | SRR13583519 | MDR-TB | lineage4.1.2 | None | SRR13423578 | Other | lineage2.2.1 | None | SRR13423629 | MDR-TB | lineage2.2.1 | None | SRR13837647 | Other | lineage4.9 | None | SRR13861206 | Other | lineage4.9 | None | SRR14782096 | MDR-TB | lineage2.2.1 | None | SRR14801688 | Sensitive | lineage4.3.3 | None | SRR14782537 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782760 | Sensitive | lineage4.3.4.1 | None | SRR15316102 | Other | lineage2.2.1.1 | None | SRR15217980 | HR-TB | lineage4 | None | SRR15522850 | HR-TB | lineage1.1.2 | None | SRR15368914 | MDR-TB | lineage2.2.1 | None | SRR15723110 | Sensitive | lineage2.2.1 | None | SRR16278273 | Other | La1.4 | None | SRR16295737 | Other | lineage2.2.1 | None | SRR16295735 | Sensitive | lineage2.2.1 | None | SRR16295741 | Other | lineage2.2.1 | None | SRR16295743 | Other | lineage2.2.1 | None | SRR16278292 | Other | La1.4 | None | SRR16295744 | Other | lineage2.2.1 | None | SRR16295752 | Other | lineage2.2.1 | None | SRR16295750 | Other | lineage2.2.1 | None | SRR16295746 | Other | lineage2.2.1 | None | SRR16295763 | Other | lineage2.2.1 | None | SRR16295766 | Other | lineage2.2.1 | None | SRR16295762 | Other | lineage2.2.1 | None | SRR16295770 | Other | lineage2.2.1 | None | SRR16295771 | Other | lineage2.2.1 | None | SRR16295775 | Other | lineage2.2.1 | None | SRR16295738 | Other | lineage2.2.1 | None | SRR16295777 | Other | lineage2.2.1 | None | SRR16295769 | Other | lineage2.2.1 | None | SRR16295772 | Other | lineage2.2.1 | None | SRR16295739 | Other | lineage2.2.1 | None | SRR16295782 | Other | lineage2.2.1 | None | SRR16295779 | Other | lineage2.2.1 | None | SRR16295788 | Other | lineage2.2.1 | None | SRR16295732 | Other | lineage2.2.1 | None | SRR16295790 | Other | lineage2.2.1 | None | SRR16295783 | Other | lineage2.2.1 | None | SRR16295792 | Other | lineage2.2.1 | None | SRR16295789 | Other | lineage2.2.1 | None | SRR16295791 | Other | lineage2.2.1 | None | SRR16295780 | Other | lineage2.2.1 | None | SRR16295787 | Other | lineage2.2.1 | None | SRR16295781 | Other | lineage2.2.1 | None | SRR16295801 | Other | lineage2.2.1 | None | SRR16295793 | Other | lineage2.2.1 | None | SRR16295807 | Other | lineage2.2.1 | None | SRR16295798 | Other | lineage2.2.1 | None | SRR16295817 | Other | lineage2.2.1 | None | SRR16295809 | Other | lineage2.2.1 | None | SRR16295811 | Other | lineage2.2.1 | None | SRR16295808 | Other | lineage2.2.1 | None | SRR16295816 | Other | lineage2.2.1 | None | SRR16295806 | Other | lineage2.2.1 | None | SRR16295819 | Other | lineage2.2.1 | None | SRR16295810 | Other | lineage2.2.1 | None | SRR16295812 | Other | lineage2.2.1 | None | SRR16295829 | Other | lineage2.2.1 | None | SRR16295813 | Other | lineage2.2.1 | None | SRR16295820 | Other | lineage2.2.1 | None | SRR16295826 | Other | lineage2.2.1 | None | SRR16295814 | Other | lineage2.2.1 | None | SRR16295830 | Other | lineage2.2.1 | None | SRR16295825 | Other | lineage2.2.1 | None | SRR16295824 | Other | lineage2.2.1 | None | SRR1735591 | Other | lineage4.1.2.1 | None | SRR16295818 | Sensitive | lineage2.2.1 | None | SRR16295821 | Other | lineage2.2.1 | None | SRR16295828 | Other | lineage2.2.1 | None | SRR16627757 | Sensitive | lineage3 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1735585 | Sensitive | lineage3 | None |
|---|
