Run ID: ERR5865119
Sample name:
Date: 01-04-2023 23:48:26
Number of reads: 994423
Percentage reads mapped: 50.49
Strain: lineage2.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.99 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288818 | p.Thr142Ala | missense_variant | 1.0 | pyrazinamide |
embB | 4248003 | p.Gln497Arg | missense_variant | 1.0 | ethambutol |
ethA | 4326721 | c.752dupG | frameshift_variant | 1.0 | ethionamide, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8175 | p.Arg292Gly | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490822 | p.Gln14Lys | missense_variant | 0.15 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 766023 | p.Ile885Thr | missense_variant | 1.0 |
rpoC | 766641 | p.His1091Pro | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779574 | c.-669T>C | upstream_gene_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472518 | n.673G>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472544 | n.699C>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473080 | n.1235C>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473099 | n.1254T>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473111 | n.1266A>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473115 | n.1270G>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474804 | n.1147C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.65 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474920 | n.1263G>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1475687 | n.2030C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475696 | n.2039T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475707 | n.2050T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.39 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3066010 | p.Leu61Arg | missense_variant | 1.0 |
ald | 3086731 | c.-89A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiA | 3640855 | p.Gly105Arg | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243346 | c.114A>G | synonymous_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338371 | p.Thr51Pro | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |