Rv3854c - c.752dupG
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
1 RR-TB
2 HR-TB
87 MDR-TB
117 Pre-XDR-TB
7 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8.1 | 7 |
| lineage2.2.1 | 64 |
| lineage4.3.4.1 | 2 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1;lineage4.3.3 | 2 |
| lineage4.1.2.1 | 19 |
| lineage4.1.3 | 2 |
| lineage4.7 | 2 |
| lineage4.3.3 | 40 |
| lineage4.8 | 14 |
| lineage2.2.1.1 | 16 |
| lineage2.1 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage2.2.1;lineage4.3.4.2 | 1 |
| lineage3 | 5 |
| lineage4.3.2 | 3 |
| lineage4.9 | 1 |
| lineage4.3.4.2 | 7 |
| lineage4.2.2.2 | 3 |
| lineage4.1.2.1.1 | 1 |
| lineage4.1.1 | 1 |
| lineage2.2.2 | 4 |
| lineage4.5 | 2 |
| lineage4.4.1.1 | 2 |
| lineage4.2.1 | 1 |
| lineage4 | 2 |
| lineage3.1.2 | 3 |
| lineage4.1.1.3 | 3 |
| lineage4.4.1 | 1 |
| lineage4.9.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 214 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1172749 | Pre-XDR-TB | lineage4.8.1 | None | SRR12080285 | MDR-TB | lineage2.2.1 | None | ERR4796853 | Pre-XDR-TB | lineage2.2.1 | in | SRR28394036 | MDR-TB | lineage4.3.4.1 | None | ERR13286122 | MDR-TB | lineage4.1.1.1 | None | ERR108431 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR3287841 | MDR-TB | lineage4.1.2.1 | pe | ERR3287845 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR11662552 | MDR-TB | lineage2.2.1 | None | SRR10040318 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774231 | Pre-XDR-TB | lineage4.1.3 | None | ERR2041702 | MDR-TB | lineage4.7 | None | SRR28393364 | XDR-TB | lineage4.3.3 | None | SRR13232500 | Pre-XDR-TB | lineage4.3.3 | None | SRR11662329 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165276 | Pre-XDR-TB | lineage4.8 | None | SRR29539707 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266728 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2516527 | Pre-XDR-TB | lineage4.3.3 | None | SRR29096545 | MDR-TB | lineage2.2.1 | None | ERR12117947 | MDR-TB | lineage4.1.2.1 | None | ERR5865117 | MDR-TB | lineage2.2.1 | None | SRR29017350 | Pre-XDR-TB | lineage4.3.3 | None | SRR1167294 | Pre-XDR-TB | lineage4.8 | None | SRR9738549 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR10040392 | Pre-XDR-TB | lineage2.1 | None | SRR13232771 | Pre-XDR-TB | lineage4.3.3 | None | SRR12080282 | MDR-TB | lineage2.2.1 | None | SRR1163089 | Pre-XDR-TB | lineage4.3.3 | None | SRR28394013 | MDR-TB | lineage4.3.3 | None | SRR12080286 | MDR-TB | lineage2.2.1 | None | SRR9971049 | MDR-TB | lineage4.4.1.1.1 | None | SRR12062550 | Pre-XDR-TB | lineage2.2.1 | None | SRR16915764 | MDR-TB | lineage2.2.1;lineage4.3.4.2 | None | DRR130173 | Pre-XDR-TB | lineage2.2.1 | None | SRR18593215 | Pre-XDR-TB | lineage4.8 | None | SRR29289325 | XDR-TB | lineage2.2.1 | None | SRR6832399 | MDR-TB | lineage2.2.1 | None | SRR29539840 | Pre-XDR-TB | lineage2.2.1 | None | ERR16022334 | Pre-XDR-TB | lineage3 | None | ERR2184354 | Pre-XDR-TB | lineage4.3.2 | pe | SRR29681224 | MDR-TB | lineage2.2.1 | None | ERR4799091 | Pre-XDR-TB | lineage4.3.3 | in | ERR13276136 | HR-TB | lineage4.3.3 | None | SRR21776295 | Pre-XDR-TB | lineage4.3.3 | None | DRR130193 | Pre-XDR-TB | lineage4.9 | None | SRR29539244 | MDR-TB | lineage2.2.1 | None | ERR4800380 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR25207056 | Pre-XDR-TB | lineage2.1 | None | ERR6866793 | MDR-TB | lineage4.3.3 | None | ERR3287312 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4831002 | Pre-XDR-TB | lineage4.2.2.2 | np | ERR4831006 | Pre-XDR-TB | lineage4.2.2.2 | np | ERR4809159 | Pre-XDR-TB | lineage4.8.1 | za | ERR5917704 | MDR-TB | lineage2.2.1 | by | ERR7911174 | Pre-XDR-TB | lineage2.2.1 | vn | SAMN02586019 | Pre-XDR-TB | lineage4.8.1 | za | SRR5266558 | Pre-XDR-TB | lineage4.3.3 | ru | ERR760791 | MDR-TB | lineage4.1.2.1.1 | ar | ERR2516703 | MDR-TB | lineage4.1.1 | nl | ERR2510730 | Pre-XDR-TB | lineage4.8 | it | SRR6824305 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR6824313 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR6824314 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR12062548 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034785 | MDR-TB | lineage4.1.2.1 | pe | ERR1034810 | Pre-XDR-TB | lineage4.8 | pt | SRR6257029 | MDR-TB | lineage2.2.1 | ru | SRR24256225 | MDR-TB | lineage4.3.3 | None | SRR10808670 | Pre-XDR-TB | lineage4.3.2 | None | SRR22873599 | Pre-XDR-TB | lineage2.2.2 | None | ERR4799267 | XDR-TB | lineage2.2.1.1 | in | ERR5917669 | Pre-XDR-TB | lineage4.3.3 | by | ERR4972492 | MDR-TB | lineage4.3.3 | None | ERR4827953 | MDR-TB | lineage2.2.1 | None | ERR11552011 | MDR-TB | lineage4.1.2.1 | None | SRR29273981 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR16915749 | MDR-TB | lineage4.3.4.2 | None | ERR13284363 | MDR-TB | lineage4.3.3 | None | ERR776664 | MDR-TB | lineage4.3.2 | None | SRR29273938 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29274151 | MDR-TB | lineage4.1.2.1 | None | SRR29772391 | Pre-XDR-TB | lineage4.8 | None | SRR29274125 | MDR-TB | lineage4.1.2.1 | None | SRR28858599 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173120 | Pre-XDR-TB | lineage4.8.1 | None | SRR13232467 | Pre-XDR-TB | lineage4.3.3 | None | SRR6832732 | Pre-XDR-TB | lineage4.3.3 | None | SRR12080291 | MDR-TB | lineage2.2.1 | None | SRR7592364 | Pre-XDR-TB | lineage4.8 | None | SRR1184340 | Pre-XDR-TB | lineage4.8.1 | None | SRR12080283 | MDR-TB | lineage2.2.1 | None | SRR29273760 | MDR-TB | lineage4.1.2.1 | None | SRR25207094 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289332 | Pre-XDR-TB | lineage3 | None | ERR4813116 | Pre-XDR-TB | lineage4.3.3 | None | SRR29289373 | XDR-TB | lineage2.2.1 | None | ERR5865119 | MDR-TB | lineage2.2.1 | None | SRR12080290 | MDR-TB | lineage2.2.1 | None | ERR1035023 | MDR-TB | lineage2.2.1 | za | ERR2510397 | MDR-TB | lineage4.5 | pk | SRR29289400 | XDR-TB | lineage2.2.1 | None | ERR4796559 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796629 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR1173443 | Pre-XDR-TB | lineage4.8 | None | ERR4797145 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4798426 | Pre-XDR-TB | lineage2.2.1 | in | ERR13284840 | MDR-TB | lineage4.1.2.1 | None | SRR18002906 | Pre-XDR-TB | lineage2.2.1 | None | SRR9738493 | Pre-XDR-TB | lineage4.8 | None | ERR13191050 | Pre-XDR-TB | lineage2.2.2 | None | ERR13195575 | Pre-XDR-TB | lineage2.2.2 | None | ERR5865116 | MDR-TB | lineage2.2.1 | None | ERR1633939 | Pre-XDR-TB | lineage2.2.1.1 | za | ERR4810473 | Pre-XDR-TB | lineage2.2.1 | cn | ERR3287842 | MDR-TB | lineage4.1.2.1 | pe | SRR28119796 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393326 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR751593 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR28467041 | Pre-XDR-TB | lineage2.2.2 | None | SRR23691417 | Pre-XDR-TB | lineage4.5 | None | SRR5486901 | MDR-TB | lineage4.1.2.1 | None | SRR28393809 | MDR-TB | lineage4.3.3 | None | SRR7592386 | Pre-XDR-TB | lineage4.8 | None | SRR12142377 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516572 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR2516451 | MDR-TB | lineage4.1.2.1 | pe | ERR2516493 | MDR-TB | lineage4.3.4.1 | pe | ERR2516696 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR552083 | MDR-TB | lineage4.4.1.1 | sz | SRR6824559 | MDR-TB | lineage2.2.1 | cn | SRR1163337 | Pre-XDR-TB | lineage4.3.3 | None | SRR6824358 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1034809 | Pre-XDR-TB | lineage4.8 | pt | ERR4972486 | MDR-TB | lineage4.3.3 | None | SAMN02419645 | Pre-XDR-TB | lineage4.3.3 | by | ERR5865989 | MDR-TB | lineage4.2.1 | None | SRR28393689 | MDR-TB | lineage4 | None | SRR15316584 | MDR-TB | lineage2.2.1 | None | ERR4896324 | MDR-TB | lineage2.2.1 | None | ERR4830478 | MDR-TB | lineage4.4.1.1.1 | None | ERR13266484 | Pre-XDR-TB | lineage2.2.1 | None | ERR11083061 | MDR-TB | lineage4.1.2.1 | None | ERR4810622 | XDR-TB | lineage2.2.1 | cn | ERR4813130 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173248 | Pre-XDR-TB | lineage4.8 | None | SRR12080289 | MDR-TB | lineage2.2.1 | None | SRR18054798 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207110 | XDR-TB | lineage2.2.1 | None | ERR4423489 | Pre-XDR-TB | lineage4.1.3 | None | SRR9588009 | MDR-TB | lineage4.4.1.1 | None | ERR5865118 | MDR-TB | lineage2.2.1 | None | SRR7070080 | Pre-XDR-TB | lineage3 | None | SRR1723568 | MDR-TB | lineage2.2.1 | cn | SRR1169103 | Pre-XDR-TB | lineage4.3.3 | None | SRR1723688 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR1723685 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR1723684 | Pre-XDR-TB | lineage2.2.1.1 | cn | ERR1035007 | MDR-TB | lineage2.2.1 | za | ERR13285076 | MDR-TB | lineage4.3.3 | None | SRR29093922 | MDR-TB | lineage2.2.1 | None | SRR26937058 | MDR-TB | lineage2.2.1 | None | ERR4813662 | MDR-TB | lineage4.3.3 | None | SRR25827537 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2653097 | Pre-XDR-TB | lineage4.3.3 | None | ERR4011078 | MDR-TB | lineage2.2.1 | None | SRR12080287 | MDR-TB | lineage2.2.1 | None | SRR1196497 | Pre-XDR-TB | lineage4.8.1 | None | ERR6879041 | MDR-TB | lineage4.1.2.1 | None | SRR1172162 | Pre-XDR-TB | lineage4.3.3 | None | SRR12062551 | Pre-XDR-TB | lineage2.2.1 | None | SRR28046127 | MDR-TB | lineage3.1.2 | None | ERR11044376 | HR-TB | lineage4.3.3 | None | SRR29093865 | MDR-TB | lineage2.2.1 | None | ERR279635 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25827443 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29273670 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR28393810 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR3148215 | Pre-XDR-TB | lineage4.1.1.3 | mx | ERR4797858 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799481 | Pre-XDR-TB | lineage3.1.2 | in | SRR13232466 | MDR-TB | lineage4.3.3 | None | SRR10040355 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266753 | Pre-XDR-TB | lineage3.1.2 | None | ERR9806986 | MDR-TB | lineage2.2.1 | None | SRR1166321 | Pre-XDR-TB | lineage4.8 | ro | ERR4813734 | MDR-TB | lineage4.3.3 | None | SRR28393968 | MDR-TB | lineage4.3.3 | None | SRR28393365 | Pre-XDR-TB | lineage4.3.3 | None | SRR11241400 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287729 | MDR-TB | lineage4.3.3 | pe | SRR28394207 | MDR-TB | lineage4 | None | SRR28393256 | RR-TB | lineage4.1.1.3 | None | SRR22461649 | MDR-TB | lineage4.3.3 | None | SRR22461708 | MDR-TB | lineage4.3.3 | None | ERR4811128 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4812817 | MDR-TB | lineage4.1.1.3 | None | ERR4813038 | MDR-TB | lineage4.1.2.1 | pe | ERR7911200 | MDR-TB | lineage4.8.1 | za | ERR4813875 | MDR-TB | lineage4.4.1 | None | ERR4813180 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | pe | ERR4819736 | Pre-XDR-TB | lineage3 | gb | ERR2513160 | Pre-XDR-TB | lineage3 | gb | ERR2515528 | MDR-TB | lineage4.9.1 | za | ERR495166 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29093369 | MDR-TB | lineage2.2.1 | None | ERR4796276 | Pre-XDR-TB | lineage2.2.1 | None | ERR2041701 | MDR-TB | lineage4.7 | None | SRR28393594 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02403509 | Pre-XDR-TB | lineage4.8 | za | ERR7162983 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR11081816 | MDR-TB | lineage4.3.3 | None | SRR16370636 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043205 | MDR-TB | lineage4.3.3 | None |
|---|
