Run ID: ERR2515528
Sample name:
Date: 31-03-2023 20:58:55
Number of reads: 922841
Percentage reads mapped: 99.79
Strain: lineage4.9.1
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
lineage4.9.1 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7582 | p.Asp94Ala | missense_variant | 0.17 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288776 | c.464_465dupTG | frameshift_variant | 0.17 | pyrazinamide |
pncA | 2288820 | p.Gln141Pro | missense_variant | 0.77 | pyrazinamide |
embB | 4247728 | p.Glu405Asp | missense_variant | 1.0 | ethambutol |
ethA | 4326721 | c.752dupG | frameshift_variant | 0.76 | ethionamide, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7567 | p.Asp89Gly | missense_variant | 0.83 |
gyrA | 8978 | c.1677C>T | synonymous_variant | 1.0 |
fgd1 | 491310 | c.528C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304849 | p.Asn640Thr | missense_variant | 0.67 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289138 | p.Leu35Arg | missense_variant | 1.0 |
Rv2752c | 3064543 | p.Met550Thr | missense_variant | 0.11 |
fbiD | 3339385 | p.Asp90Asn | missense_variant | 1.0 |
Rv3083 | 3449820 | c.1317G>C | synonymous_variant | 1.0 |
embA | 4243200 | c.-32delG | upstream_gene_variant | 1.0 |
ethA | 4326925 | p.Ser183Arg | missense_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |