lineage | Count |
---|---|
lineage4.9 | 42 |
lineage1.1.2 | 6 |
La1.2 | 1 |
lineage4.3.1.1 | 4 |
lineage6.1.3 | 2 |
lineage3.1.1 | 8 |
lineage4.1.1.3 | 6 |
lineage1.2.2.1 | 2 |
lineage4.1.2.1 | 16 |
lineage3.1.2 | 4 |
lineage3.1.3 | 2 |
lineage3 | 24 |
lineage4.2.2.2 | 2 |
lineage4.1.1 | 10 |
9 | |
lineage4.8 | 16 |
lineage4.8.1 | 1 |
lineage4.2 | 1 |
lineage4.1.1.3.1 | 4 |
lineage3.1.2.2 | 1 |
lineage4 | 6 |
lineage4;lineage3 | 1 |
lineage4.2.1.1 | 1 |
lineage4.8.2 | 2 |
lineage2.2.1 | 59 |
lineage4.7 | 6 |
lineage1.1.3.3 | 1 |
lineage4.4.1.1 | 14 |
lineage1.2.2.2 | 3 |
lineage4.3.4.2 | 3 |
lineage4.2.2 | 1 |
lineage4.6.2.2 | 3 |
lineage4.3.2 | 1 |
lineage4.1.2.1;lineage2.2.1 | 1 |
lineage4.3.2.1 | 12 |
lineage4.4.1.1.1 | 5 |
lineage4.3.3 | 11 |
lineage4.3.4.2.1 | 9 |
lineage1.1.3.2 | 4 |
lineage4.4 | 1 |
lineage1 | 1 |
lineage4.5 | 4 |
lineage4.1.2 | 7 |
lineage4.3.4.1 | 4 |
lineage2.2 | 2 |
lineage4.3 | 1 |
La1.8.1 | 18 |
lineage5.1.4 | 1 |
lineage4;lineage2 | 1 |
lineage2.2.1.1 | 5 |
lineage4.9;La1.8 | 1 |
La1.3 | 1 |
lineage4.2.1 | 2 |
lineage2.2.2 | 3 |
lineage4.6.1.2 | 1 |
lineage4.8;lineage4.4.1.1.1 | 1 |
lineage1.1 | 1 |
lineage1.1.3 | 1 |
La1.7.1 | 4 |
La1.4 | 1 |
lineage6 | 1 |
lineage4.4.2 | 1 |
lineage4.1.2;lineage3.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage1.2.1.1 | 1 |
lineage3.1 | 1 |
lineage4.8;lineage4.2.1.1 | 1 |
spoligotype | Count |
---|---|
None | 372 |
ID | Drug resistance | Lineage | Country iso2 | ERR2693238 | HR-TB | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR5486086 | Other | La1.2 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR6045445 | Other | lineage4.3.1.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | ERR2660505 | Other | lineage1.2.2.1 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR6045683 | Other | lineage3.1.2 | None | SRR6045618 | Other | lineage3.1.2 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045726 | Other | lineage3 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045743 | Other | lineage3 | None | SRR5818610 | Other | lineage3 | None | SRR6045749 | Other | lineage4.1.1 | gb | SRR6046152 | Other | lineage4.9 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR5818685 | Sensitive | None | SRR6044841 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044857 | Other | lineage4.8.1 | gb | SRR6045925 | Other | lineage4.2 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044888 | Other | lineage4.1.1.3.1 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6044993 | Other | lineage3 | None | SRR6044936 | Other | lineage4 | None | SRR6045036 | Other | lineage4;lineage3 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR6045052 | HR-TB | lineage4.2.1.1 | None | SRR6045164 | Other | lineage4.1.2.1 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6045138 | Other | lineage3.1.1 | None | SRR6045178 | Other | lineage3 | None | SRR6045163 | Other | lineage2.2.1 | None | SRR6045199 | Other | lineage2.2.1 | None | SRR6045205 | Sensitive | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045295 | Other | lineage4.7 | None | SRR6045261 | Other | lineage1.1.2 | gb | SRR6045289 | Other | None | SRR6046273 | Other | lineage3.1.2 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046291 | Other | lineage3 | None | ERR2851354 | RR-TB | lineage4.9 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046457 | Other | lineage3 | gb | ERR2851359 | Other | lineage4.9 | None | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046534 | Other | lineage1.1.2 | None | SRR6046541 | Other | lineage4.9 | None | SRR6046655 | Other | lineage4.1.2.1 | None | SRR6046607 | Other | lineage3 | None | SRR6046634 | Other | lineage3 | gb | SRR6046729 | Other | None | SRR6511600 | MDR-TB | lineage4.3.4.2 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046739 | Other | lineage1.1.2 | None | SRR6046761 | Other | lineage3 | gb | SRR6046764 | Other | lineage4.2.2 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046824 | HR-TB | None | SRR6982078 | Sensitive | None | ERR502482 | Sensitive | lineage4.9 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR3148546 | Other | lineage4.3.2 | None | ERR502483 | Sensitive | lineage4.9 | None | ERR502484 | Sensitive | lineage4.9 | None | ERR502485 | Sensitive | lineage4.9 | None | ERR502490 | Sensitive | lineage4.9 | None | ERR502489 | Sensitive | lineage4.9 | None | ERR502486 | Sensitive | lineage4.9 | None | ERR4863405 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR502492 | Sensitive | lineage4.9 | None | ERR502498 | Sensitive | lineage4.9 | None | ERR502493 | Sensitive | lineage4.9 | None | SRR6856087 | Sensitive | lineage4 | None | ERR502497 | Sensitive | lineage4.9 | None | SRR6982484 | Sensitive | lineage3.1.1 | None | SRR6982090 | RR-TB | lineage4.4.1.1 | None | SRR6982092 | Other | lineage4.3.2.1 | None | SRR6856119 | Sensitive | lineage2.2.1 | None | SRR6982100 | Sensitive | lineage4.4.1.1.1 | None | SRR6896162 | Sensitive | lineage4.9 | None | SRR6982102 | Other | lineage2.2.1 | None | SRR6896178 | Sensitive | lineage2.2.1 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR6896255 | Sensitive | lineage4.3.3 | None | SRR6982106 | Sensitive | lineage4.8 | None | SRR6982414 | Sensitive | lineage4.9 | None | SRR6982139 | Sensitive | lineage4.9 | None | SRR6982138 | Sensitive | lineage4 | None | SRR6982148 | Sensitive | lineage2.2.1 | None | SRR6982430 | Other | lineage4.3.4.2.1 | None | SRR6982146 | Sensitive | lineage4.1.1.3 | None | SRR6982419 | Other | lineage4.8 | None | SRR6896339 | MDR-TB | lineage2.2.1 | None | SRR6982175 | Other | lineage1.1.3.2 | None | SRR6982418 | Sensitive | lineage4.1.1.3 | None | SRR6896340 | HR-TB | lineage4.4.1.1 | None | SRR6896348 | Sensitive | lineage4.1.2.1 | None | SRR6982190 | Sensitive | lineage4.3.3 | None | SRR6982195 | RR-TB | lineage4.4 | None | SRR6982196 | Sensitive | None | SRR6982227 | Other | lineage4.1.1 | None | SRR6982427 | Sensitive | lineage4.1.1 | None | SRR6982213 | Sensitive | lineage4.3.2.1 | None | SRR6982198 | HR-TB | lineage1 | None | SRR6982205 | Sensitive | lineage1.2.2.1 | None | SRR6982456 | Sensitive | lineage4.1.1.3 | None | SRR6982229 | Sensitive | lineage2.2.1 | None | SRR6982292 | Other | lineage4.4.1.1.1 | None | SRR6982297 | Sensitive | lineage4.1.1 | None | SRR6982328 | HR-TB | lineage3.1.1 | None | SRR6982313 | Sensitive | lineage4.3.4.2.1 | None | SRR6824324 | Other | lineage4.5 | None | SRR6982334 | Sensitive | lineage4.4.1.1 | None | SRR6982337 | Sensitive | lineage4.7 | None | SRR6982332 | Sensitive | lineage4.4.1.1 | None | SRR6855718 | Sensitive | lineage4.8 | None | SRR6855721 | Sensitive | lineage4.3.2.1 | None | SRR6981922 | Sensitive | lineage4.3.2.1 | None | SRR6982362 | Other | lineage4.3.2.1 | None | SRR6855774 | Other | lineage2.2.1 | None | SRR6981948 | Sensitive | lineage4.3.2.1 | None | SRR6981941 | Sensitive | lineage4.3.4.2.1 | None | SRR6982363 | Sensitive | lineage4.3.3 | None | SRR6981981 | Other | lineage4.3.3 | None | SRR6981968 | Sensitive | lineage4.1.2 | None | SRR6981975 | Sensitive | lineage4.7 | None | SRR6855828 | Other | lineage4.3.2.1 | None | SRR6981978 | Sensitive | lineage4.3.4.2.1 | None | SRR6982385 | Sensitive | lineage4.1.2 | None | SRR6981982 | Sensitive | lineage4.1.2.1 | None | SRR6981983 | Sensitive | lineage3.1.1 | None | SRR6981993 | Other | lineage4.3.2.1 | None | SRR6855851 | Sensitive | lineage4.3.4.2.1 | None | SRR6982011 | Other | lineage4.1.1 | None | SRR6982035 | Sensitive | lineage4.9 | None | SRR6855915 | Sensitive | lineage4.9 | None | SRR6982026 | Sensitive | lineage4.3.3 | None | SRR6982014 | Other | lineage4.1.1 | None | SRR6982022 | Sensitive | lineage4.4.1.1 | None | SRR6855917 | Other | lineage4.8 | None | SRR6982391 | Other | lineage4.1.2.1 | None | SRR6824624 | Sensitive | lineage2.2.1 | None | SRR6982037 | Sensitive | lineage4.1.1 | None | SRR6855939 | Sensitive | lineage2.2.1 | None | SRR6982050 | Sensitive | lineage4.3.4.1 | None | SRR6855967 | Sensitive | lineage4.1.2 | None | SRR6982043 | Sensitive | lineage4.4.1.1 | None | SRR6982398 | MDR-TB | lineage2.2 | None | SRR6982048 | HR-TB | lineage4.3.2.1 | None | SRR6855963 | RR-TB | lineage2.2.1 | None | SRR6982056 | Sensitive | lineage4.3.4.2.1 | None | SRR6982057 | Pre-XDR-TB | lineage4.3 | None | SRR6982064 | Sensitive | lineage4.1.1 | None | SRR6982058 | HR-TB | lineage2.2.1 | None | SRR6982075 | Sensitive | lineage3 | None | SRR6856032 | Sensitive | lineage2.2.1 | None | SRR6982076 | Sensitive | lineage4.9 | None | SRR6982405 | Sensitive | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | ERR5087606 | Other | La1.8.1 | None | ERR502513 | Sensitive | lineage5.1.4 | gh | ERR5087912 | Other | La1.8.1 | None | ERR5162108 | Other | La1.8.1 | None | ERR5311080 | Other | La1.8.1 | None | ERR5162118 | Other | La1.8.1 | None | ERR5162133 | Other | La1.8.1 | None | SRR6982510 | Sensitive | lineage4;lineage2 | None | SRR7131201 | Other | lineage4.8 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | SRR7131163 | Other | lineage2.2.1 | None | SRR6982509 | Sensitive | lineage4.3.2.1 | None | SRR6982514 | Sensitive | lineage4.3.3 | None | SRR6982558 | Other | lineage4.3.4.2 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR8600217 | Other | La1.8.1 | None | SRR8217919 | HR-TB | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR9971351 | RR-TB | lineage2.2.1 | None | ERR3261389 | Other | lineage4.9 | None | SRR9971017 | HR-TB | lineage2.2.1 | None | SRR9971147 | RR-TB | lineage2.2.1 | None | ERR3261359 | Other | lineage4.9 | None | SRR9971051 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971052 | MDR-TB | lineage4.4.1.1 | None | ERR10219868 | Other | lineage4.1.2.1 | None | ERR3261351 | Other | lineage4.9 | None | ERR3324375 | Other | lineage1.1.3.2 | None | ERR3324354 | Sensitive | lineage4.8 | None | ERR3283053 | Other | lineage4.9 | None | ERR4187604 | RR-TB | La1.8.1 | None | ERR3335798 | MDR-TB | lineage2.2.1 | None | ERR4188010 | Other | La1.8.1 | None | ERR4187800 | Other | La1.8.1 | None | ERR4188372 | RR-TB | La1.8.1 | None | ERR4188035 | Other | La1.8.1 | None | ERR4188202 | Other | La1.8.1 | None | ERR4188255 | Other | lineage4.9;La1.8 | None | ERR4188253 | Other | La1.8.1 | None | ERR4769424 | Sensitive | lineage4.9 | None | ERR4188369 | Other | La1.8.1 | None | ERR4627392 | Other | La1.8.1 | None | ERR4769419 | Other | lineage4.9 | None | ERR4192398 | Other | lineage6.1.3 | None | ERR4627379 | Other | La1.8.1 | None | ERR4769507 | Sensitive | lineage4.9 | None | ERR4769467 | Sensitive | lineage4.9 | None | ERR4769471 | Other | La1.3 | None | ERR5864322 | MDR-TB | lineage4.2.1 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR5864323 | MDR-TB | lineage4.2.1 | None | ERR5865119 | MDR-TB | lineage2.2.1 | None | ERR5865337 | MDR-TB | lineage2.2 | None | ERR5865118 | MDR-TB | lineage2.2.1 | None | ERR6197032 | Other | lineage4.9 | None | ERR5865339 | MDR-TB | lineage2.2.1 | None | ERR7821182 | Other | lineage1.1.3.2 | None | ERR9117676 | Other | lineage4.2.2.2 | None | ERR7911622 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025347 | Sensitive | lineage4.9 | None | ERR9117696 | Other | lineage4.1.2.1 | None | ERR9117675 | Other | lineage4.8 | None | ERR9117695 | Other | lineage4.1.2.1 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117681 | Other | lineage4.3.3 | None | ERR9117725 | Other | lineage4.1.1 | None | ERR9117714 | Other | lineage3.1.2 | None | ERR9117729 | Other | lineage3 | None | ERR9117842 | Sensitive | lineage3 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117740 | Other | lineage3.1.1 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | ERR9786543 | Sensitive | lineage4.1.2.1 | None | ERR987757 | MDR-TB | lineage4.6.1.2 | None | SRR10272569 | Sensitive | lineage4.4.1.1 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR10315728 | MDR-TB | lineage4.8;lineage4.4.1.1.1 | None | SRR10869051 | HR-TB | lineage2.2.1 | None | SRR10869160 | Sensitive | lineage2.2.1.1 | None | SRR10869074 | Sensitive | lineage2.2.1.1 | None | SRR11342656 | MDR-TB | lineage2.2.1 | None | SRR11349136 | MDR-TB | lineage4.1.2.1 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11349148 | RR-TB | lineage2.2.1 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | SRR11349193 | RR-TB | lineage4.1.2 | None | SRR11349159 | MDR-TB | lineage2.2.2 | None | SRR11349205 | MDR-TB | lineage2.2.1 | None | SRR12199472 | Sensitive | lineage1.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR12199387 | Other | lineage1.1.3 | None | SRR13423629 | MDR-TB | lineage2.2.1 | None | SRR12199486 | Other | lineage2.2.1 | None | SRR13199739 | Other | La1.7.1 | None | SRR13199746 | Other | La1.7.1 | None | SRR15217980 | HR-TB | lineage4 | None | SRR14782760 | Sensitive | lineage4.3.4.1 | None | SRR1735585 | Sensitive | lineage3 | None | SRR15316102 | Other | lineage2.2.1.1 | None | SRR15368914 | MDR-TB | lineage2.2.1 | None | SRR16278292 | Other | La1.4 | None | SRR1735591 | Other | lineage4.1.2.1 | None | SRR15316084 | Other | lineage2.2.1 | None | SRR17856664 | Sensitive | lineage3 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002907 | MDR-TB | lineage2.2.1 | None | SRR18002902 | Other | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18002932 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002954 | Other | lineage2.2.1 | None | SRR18002997 | Other | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18002915 | Sensitive | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003035 | Other | La1.8.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR18003052 | Other | lineage2.2.1.1 | None | SRR18391683 | Other | La1.7.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18213726 | Other | lineage3 | None | SRR19304095 | Other | lineage4.1.2.1 | None | SRR18391772 | Other | La1.7.1 | None | SRR19304094 | Other | lineage6 | None | SRR20969923 | Other | lineage2.2.1 | None | SRR20969951 | Other | lineage4.4.2 | None | SRR21001883 | XDR-TB | lineage2.2.1 | None | SRR2101625 | Other | lineage4.1.2;lineage3.1 | None | SRR2101540 | Sensitive | lineage4.3.2.1 | None | SRR2101595 | RR-TB | lineage4.3.4.2.1 | None | SRR2101312 | MDR-TB | lineage2.2.1 | None | SRR2101617 | Other | lineage4.1.1 | None | SRR2101637 | RR-TB | lineage4.4.1.1 | None | SRR2101681 | Sensitive | lineage4.8 | None | SRR2101659 | Other | lineage4.4.1.1.1 | None | SRR2101666 | Sensitive | lineage4.8 | None | SRR2101663 | Other | lineage1.1.3.2 | None | SRR2101678 | Sensitive | lineage4.4.1.1.1 | None | SRR2101711 | Sensitive | lineage2.2.1 | None | SRR2101689 | Other | lineage4.3.4.1 | None | SRR2101693 | Sensitive | lineage4.1.2 | None | SRR2101685 | Sensitive | lineage4.9 | None | SRR2101709 | Sensitive | lineage4.1.1.3 | None | SRR2101773 | Sensitive | lineage4.3.4.2.1 | None | SRR2101827 | Sensitive | lineage4.3.4.2.1 | None | SRR2101786 | Sensitive | lineage4.4.1.1 | None | SRR2101802 | Sensitive | lineage4.4.1.1 | None | SRR21675637 | Sensitive | lineage4.3.3 | None | SRR2101803 | Sensitive | lineage4.3.3 | None | SRR2101816 | Other | lineage4.8 | None | SRR21798279 | MDR-TB | lineage2.2.1 | None | SRR21686114 | Other | lineage3.1.3 | None | SRR21714045 | HR-TB | lineage2.2.1 | None | SRR21728726 | HR-TB | lineage1.2.1.2.1 | None | SRR22048392 | Other | lineage4.8 | None | SRR22424910 | HR-TB | lineage4.5 | None | ERR4815261 | Other | lineage4.8 | gb | ERR4815171 | HR-TB | lineage1.1.2 | None | SRR3675485 | Other | lineage2.2.1 | None | ERR1665403 | MDR-TB | lineage2.2.1 | None | SRR3675491 | Other | lineage4.7 | None | SRR3105736 | Other | lineage1.2.2.2 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR3675256 | Other | lineage4.7 | None | SRR3675276 | Other | lineage4.1.2.1 | gb | SRR3675282 | Other | None | SRR3675288 | Other | lineage3 | None | ERR2179834 | Other | lineage3 | None | SRR3675287 | Other | lineage3 | None | ERR2179857 | RR-TB | lineage4 | None | SRR3675451 | Sensitive | lineage4.1.2.1 | None | SRR3675361 | Other | lineage1.1.2 | gb | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675452 | Other | lineage3 | None | SRR3675538 | Other | lineage4.8 | None | SRR3675512 | Other | lineage2.2.1 | None | ERR2027252 | Other | lineage4.8;lineage4.2.1.1 | None | ERR2027256 | Other | lineage4.1.2 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR3675556 | Other | lineage3 | None | SRR3675565 | Other | lineage3 | None | ERR2512460 | Other | lineage1.2.2.2 | gb | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR2027293 | Other | lineage4.3.4.2 | None | ERR4816677 | Other | lineage4.5 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007174 | Other | lineage4.3.4.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007180 | Other | None | ERR2513924 | RR-TB | lineage4.8 | None | ERR2514173 | Other | lineage4.5 | gb |
---|