EBG00000313339 - n.2557G>C


Drug resistance types
105 Sensitive 25 RR-TB 16 HR-TB 33 MDR-TB 9 Pre-XDR-TB 2 XDR-TB 170 Other
lineage Counts
lineage Count
9
lineage4.9 42
lineage4.8 15
lineage4.2 1
lineage4.1.1.3.1 4
lineage4.1.2.1 15
lineage4 6
lineage3 21
lineage3.1.2.2 1
lineage4;lineage3 1
lineage4.2.1.1 1
lineage4.3.1.1 4
lineage4.8.2 2
lineage3.1.1 8
lineage2.2.1 59
lineage4.7 6
lineage1.1.3.3 1
lineage3.1.2 4
lineage4.4.1.1 14
lineage1.2.2.2 2
lineage1.1.2 4
lineage4.2.2 1
lineage4.3.4.2 3
lineage4.3.2 1
lineage4.6.2.2 3
lineage4.1.2.1;lineage2.2.1 1
lineage4.4.1.1.1 5
lineage4.3.2.1 12
lineage4.1.1.3 6
lineage4.3.3 11
lineage4.3.4.2.1 9
lineage1.1.3.2 4
lineage1 1
lineage4.4 1
lineage1.2.2.1 2
lineage4.1.1 9
lineage4.5 3
lineage4.1.2 7
lineage2.2 2
lineage4.3 1
lineage4.3.4.1 4
La1.8.1 18
lineage4;lineage2 1
lineage2.2.1.1 5
lineage4.9;La1.8 1
lineage6.1.3 2
La1.3 1
lineage4.2.1 2
lineage2.2.2 3
lineage4.2.2.2 2
lineage4.6.1.2 1
lineage4.8;lineage4.4.1.1.1 1
lineage1.1.3 1
lineage1.1 1
La1.7.1 4
La1.4 1
lineage6 1
lineage4.4.2 1
lineage4.1.2;lineage3.1 1
lineage1.2.1.2.1 1
lineage3.1.3 2
lineage1.2.1.1 1
lineage4.8;lineage4.2.1.1 1
lineage3.1 1
La1.2 1
spoligotype Counts
spoligotype Count
None 360
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5818685 Sensitive None
SRR6044838 Other lineage4.9 None
SRR6044841 Other lineage4.9 None
SRR6045909 Other lineage4.8 None
SRR6045925 Other lineage4.2 None
SRR6044888 Other lineage4.1.1.3.1 None
SRR6045944 Other lineage4.1.2.1 None
SRR6044936 Other lineage4 None
SRR6044993 Other lineage3 None
SRR6045017 Other lineage3.1.2.2 None
SRR6045036 Other lineage4;lineage3 None
SRR6045052 HR-TB lineage4.2.1.1 None
SRR6045071 Other lineage4.3.1.1 None
SRR6046159 Other lineage4.8.2 None
SRR6045138 Other lineage3.1.1 None
SRR6045164 Other lineage4.1.2.1 None
SRR6045163 Other lineage2.2.1 None
SRR6045178 Other lineage3 None
SRR6045205 Sensitive lineage4.9 None
SRR6045199 Other lineage2.2.1 None
SRR6045267 RR-TB lineage4 None
SRR6045289 Other None
SRR6045295 Other lineage4.7 None
SRR6045312 Other lineage1.1.3.3 None
SRR6046275 Other lineage3.1.1 None
ERR2851359 Other lineage4.9 None
SRR6046273 Other lineage3.1.2 None
SRR6046291 Other lineage3 None
SRR6046359 Other lineage4.7 None
SRR6046343 Other lineage2.2.1 None
ERR2851354 RR-TB lineage4.9 None
SRR6046463 Other lineage4.4.1.1 None
SRR6046456 Other lineage4.1.1.3.1 None
SRR6046541 Other lineage4.9 None
SRR6046521 Other lineage4.4.1.1 None
SRR6046484 Other lineage1.2.2.2 None
SRR6046534 Other lineage1.1.2 None
SRR6046607 Other lineage3 None
SRR6046764 Other lineage4.2.2 None
SRR6046737 Other lineage4.9 None
SRR6046739 Other lineage1.1.2 None
SRR6046655 Other lineage4.1.2.1 None
SRR6046729 Other None
SRR6046824 HR-TB None
SRR6046766 Other lineage3.1.1 None
SRR6511600 MDR-TB lineage4.3.4.2 None
SRR6982078 Sensitive None
ERR3148546 Other lineage4.3.2 None
ERR502483 Sensitive lineage4.9 None
ERR502482 Sensitive lineage4.9 None
ERR502472 Other lineage4.6.2.2 None
ERR502484 Sensitive lineage4.9 None
SRR6856087 Sensitive lineage4 None
ERR502485 Sensitive lineage4.9 None
ERR502489 Sensitive lineage4.9 None
ERR502498 Sensitive lineage4.9 None
SRR6982090 RR-TB lineage4.4.1.1 None
ERR502486 Sensitive lineage4.9 None
ERR502490 Sensitive lineage4.9 None
ERR502492 Sensitive lineage4.9 None
ERR502493 Sensitive lineage4.9 None
ERR4863405 Pre-XDR-TB lineage4.1.2.1;lineage2.2.1 None
ERR502497 Sensitive lineage4.9 None
SRR6982484 Sensitive lineage3.1.1 None
SRR6896162 Sensitive lineage4.9 None
SRR6982100 Sensitive lineage4.4.1.1.1 None
SRR6856119 Sensitive lineage2.2.1 None
SRR6982092 Other lineage4.3.2.1 None
SRR6982102 Other lineage2.2.1 None
SRR6982104 Sensitive lineage2.2.1 None
SRR6982418 Sensitive lineage4.1.1.3 None
SRR6896178 Sensitive lineage2.2.1 None
SRR6982148 Sensitive lineage2.2.1 None
SRR6982146 Sensitive lineage4.1.1.3 None
SRR6982106 Sensitive lineage4.8 None
SRR6982414 Sensitive lineage4.9 None
SRR6982138 Sensitive lineage4 None
SRR6982139 Sensitive lineage4.9 None
SRR6896255 Sensitive lineage4.3.3 None
SRR6896340 HR-TB lineage4.4.1.1 None
SRR6982419 Other lineage4.8 None
SRR6896339 MDR-TB lineage2.2.1 None
SRR6982430 Other lineage4.3.4.2.1 None
SRR6896348 Sensitive lineage4.1.2.1 None
SRR6982175 Other lineage1.1.3.2 None
SRR6982190 Sensitive lineage4.3.3 None
SRR6982198 HR-TB lineage1 None
SRR6982196 Sensitive None
SRR6982195 RR-TB lineage4.4 None
SRR6982205 Sensitive lineage1.2.2.1 None
SRR6982427 Sensitive lineage4.1.1 None
SRR6982229 Sensitive lineage2.2.1 None
SRR6982213 Sensitive lineage4.3.2.1 None
SRR6982227 Other lineage4.1.1 None
SRR6982297 Sensitive lineage4.1.1 None
SRR6982292 Other lineage4.4.1.1.1 None
SRR6982456 Sensitive lineage4.1.1.3 None
SRR6982313 Sensitive lineage4.3.4.2.1 None
SRR6982337 Sensitive lineage4.7 None
SRR6982328 HR-TB lineage3.1.1 None
SRR6982332 Sensitive lineage4.4.1.1 None
SRR6982334 Sensitive lineage4.4.1.1 None
SRR6824324 Other lineage4.5 None
SRR6981941 Sensitive lineage4.3.4.2.1 None
SRR6855721 Sensitive lineage4.3.2.1 None
SRR6981922 Sensitive lineage4.3.2.1 None
SRR6982362 Other lineage4.3.2.1 None
SRR6855718 Sensitive lineage4.8 None
SRR6981948 Sensitive lineage4.3.2.1 None
SRR6982363 Sensitive lineage4.3.3 None
SRR6981975 Sensitive lineage4.7 None
SRR6855774 Other lineage2.2.1 None
SRR6981968 Sensitive lineage4.1.2 None
SRR6981981 Other lineage4.3.3 None
SRR6982022 Sensitive lineage4.4.1.1 None
SRR6981978 Sensitive lineage4.3.4.2.1 None
SRR6981983 Sensitive lineage3.1.1 None
SRR6982385 Sensitive lineage4.1.2 None
SRR6982014 Other lineage4.1.1 None
SRR6855828 Other lineage4.3.2.1 None
SRR6981993 Other lineage4.3.2.1 None
SRR6855851 Sensitive lineage4.3.4.2.1 None
SRR6981982 Sensitive lineage4.1.2.1 None
SRR6982011 Other lineage4.1.1 None
SRR6982026 Sensitive lineage4.3.3 None
SRR6855915 Sensitive lineage4.9 None
SRR6855917 Other lineage4.8 None
SRR6855939 Sensitive lineage2.2.1 None
SRR6982035 Sensitive lineage4.9 None
SRR6982391 Other lineage4.1.2.1 None
SRR6982037 Sensitive lineage4.1.1 None
SRR6855963 RR-TB lineage2.2.1 None
SRR6982043 Sensitive lineage4.4.1.1 None
SRR6982398 MDR-TB lineage2.2 None
SRR6824624 Sensitive lineage2.2.1 None
SRR6982048 HR-TB lineage4.3.2.1 None
SRR6982057 Pre-XDR-TB lineage4.3 None
SRR6855967 Sensitive lineage4.1.2 None
SRR6982050 Sensitive lineage4.3.4.1 None
SRR6982056 Sensitive lineage4.3.4.2.1 None
SRR6982077 MDR-TB lineage4.3.2.1 None
SRR6982058 HR-TB lineage2.2.1 None
SRR6982064 Sensitive lineage4.1.1 None
SRR6982075 Sensitive lineage3 None
SRR6856032 Sensitive lineage2.2.1 None
SRR6982076 Sensitive lineage4.9 None
SRR6982405 Sensitive None
ERR5162118 Other La1.8.1 None
ERR5162108 Other La1.8.1 None
ERR5087912 Other La1.8.1 None
ERR5087606 Other La1.8.1 None
ERR5162133 Other La1.8.1 None
ERR5311080 Other La1.8.1 None
SRR6982509 Sensitive lineage4.3.2.1 None
SRR6982510 Sensitive lineage4;lineage2 None
SRR9971246 MDR-TB lineage4.1.1.3 None
SRR6982514 Sensitive lineage4.3.3 None
SRR6982558 Other lineage4.3.4.2 None
SRR8217919 HR-TB lineage2.2.1 None
SRR7131004 Other lineage4.6.2.2 None
SRR7131163 Other lineage2.2.1 None
SRR7131201 Other lineage4.8 None
SRR7131287 Other lineage2.2.1.1 None
SRR9971351 RR-TB lineage2.2.1 None
SRR9971147 RR-TB lineage2.2.1 None
SRR8600217 Other La1.8.1 None
SRR9971017 HR-TB lineage2.2.1 None
SRR9971051 Pre-XDR-TB lineage4.3.3 None
SRR9971052 MDR-TB lineage4.4.1.1 None
ERR3261389 Other lineage4.9 None
ERR10219868 Other lineage4.1.2.1 None
ERR3261359 Other lineage4.9 None
ERR3261351 Other lineage4.9 None
ERR3335798 MDR-TB lineage2.2.1 None
ERR3283053 Other lineage4.9 None
ERR3324354 Sensitive lineage4.8 None
ERR3324375 Other lineage1.1.3.2 None
ERR4188369 Other La1.8.1 None
ERR4187604 RR-TB La1.8.1 None
ERR4187800 Other La1.8.1 None
ERR4188010 Other La1.8.1 None
ERR4188202 Other La1.8.1 None
ERR4188255 Other lineage4.9;La1.8 None
ERR4188035 Other La1.8.1 None
ERR4188253 Other La1.8.1 None
ERR4188372 RR-TB La1.8.1 None
ERR4769467 Sensitive lineage4.9 None
ERR4192398 Other lineage6.1.3 None
ERR4627379 Other La1.8.1 None
ERR4769424 Sensitive lineage4.9 None
ERR4627392 Other La1.8.1 None
ERR4769419 Other lineage4.9 None
ERR4769527 Sensitive lineage4.9 None
ERR4769471 Other La1.3 None
ERR4769507 Sensitive lineage4.9 None
ERR5864323 MDR-TB lineage4.2.1 None
ERR5865119 MDR-TB lineage2.2.1 None
ERR5864322 MDR-TB lineage4.2.1 None
ERR5865339 MDR-TB lineage2.2.1 None
ERR5865337 MDR-TB lineage2.2 None
ERR5865118 MDR-TB lineage2.2.1 None
ERR9117678 Other lineage4.6.2.2 None
ERR7821182 Other lineage1.1.3.2 None
ERR8025347 Sensitive lineage4.9 None
ERR6197032 Other lineage4.9 None
ERR7911622 Pre-XDR-TB lineage2.2.2 None
ERR9117676 Other lineage4.2.2.2 None
ERR9117695 Other lineage4.1.2.1 None
ERR9117675 Other lineage4.8 None
ERR9117681 Other lineage4.3.3 None
ERR9117696 Other lineage4.1.2.1 None
ERR9117725 Other lineage4.1.1 None
ERR9117714 Other lineage3.1.2 None
ERR9117729 Other lineage3 None
ERR9117812 Other lineage4.3.1.1 None
ERR9117740 Other lineage3.1.1 None
SRR10869074 Sensitive lineage2.2.1.1 None
ERR9117842 Sensitive lineage3 None
SRR10272569 Sensitive lineage4.4.1.1 None
SRR10315707 MDR-TB lineage4.4.1.1.1 None
SRR10869051 HR-TB lineage2.2.1 None
ERR9786543 Sensitive lineage4.1.2.1 None
ERR987757 MDR-TB lineage4.6.1.2 None
SRR10315464 MDR-TB lineage4.4.1.1 None
SRR10315728 MDR-TB lineage4.8;lineage4.4.1.1.1 None
SRR11342656 MDR-TB lineage2.2.1 None
SRR10869160 Sensitive lineage2.2.1.1 None
SRR11342683 Other lineage4.1.2 None
SRR11349136 MDR-TB lineage4.1.2.1 None
SRR11349193 RR-TB lineage4.1.2 None
SRR11349148 RR-TB lineage2.2.1 None
SRR11349159 MDR-TB lineage2.2.2 None
SRR11349135 XDR-TB lineage4.3.3 None
SRR12199387 Other lineage1.1.3 None
SRR11349205 MDR-TB lineage2.2.1 None
SRR11349207 RR-TB lineage2.2.1 None
SRR12199472 Sensitive lineage1.1 None
SRR15217980 HR-TB lineage4 None
SRR13199746 Other La1.7.1 None
SRR13423629 MDR-TB lineage2.2.1 None
SRR14782760 Sensitive lineage4.3.4.1 None
SRR12199486 Other lineage2.2.1 None
SRR13199739 Other La1.7.1 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR15316084 Other lineage2.2.1 None
SRR15368914 MDR-TB lineage2.2.1 None
SRR16278292 Other La1.4 None
SRR1735591 Other lineage4.1.2.1 None
SRR17856664 Sensitive lineage3 None
SRR15316102 Other lineage2.2.1.1 None
SRR1735585 Sensitive lineage3 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18002902 Other lineage2.2.1 None
SRR18002907 MDR-TB lineage2.2.1 None
SRR18002901 MDR-TB lineage2.2.1 None
SRR18002908 Other lineage2.2.1 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18002954 Other lineage2.2.1 None
SRR18002915 Sensitive lineage2.2.1 None
SRR18002932 Pre-XDR-TB lineage2.2.1 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR18002997 Other lineage2.2.1 None
SRR18003023 Other lineage2.2.1 None
SRR18003035 Other La1.8.1 None
SRR18213721 Other lineage4.8 None
SRR18003042 Other lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18003052 Other lineage2.2.1.1 None
SRR18391683 Other La1.7.1 None
SRR18213736 MDR-TB lineage3 None
SRR18213726 Other lineage3 None
SRR19304094 Other lineage6 None
SRR18391772 Other La1.7.1 None
SRR2101312 MDR-TB lineage2.2.1 None
SRR19304095 Other lineage4.1.2.1 None
SRR20969923 Other lineage2.2.1 None
SRR20969951 Other lineage4.4.2 None
SRR21001883 XDR-TB lineage2.2.1 None
SRR2101625 Other lineage4.1.2;lineage3.1 None
SRR2101617 Other lineage4.1.1 None
SRR2101540 Sensitive lineage4.3.2.1 None
SRR2101595 RR-TB lineage4.3.4.2.1 None
SRR2101666 Sensitive lineage4.8 None
SRR2101637 RR-TB lineage4.4.1.1 None
SRR2101773 Sensitive lineage4.3.4.2.1 None
SRR2101663 Other lineage1.1.3.2 None
SRR2101681 Sensitive lineage4.8 None
SRR2101685 Sensitive lineage4.9 None
SRR2101678 Sensitive lineage4.4.1.1.1 None
SRR2101689 Other lineage4.3.4.1 None
SRR2101693 Sensitive lineage4.1.2 None
SRR2101711 Sensitive lineage2.2.1 None
SRR2101827 Sensitive lineage4.3.4.2.1 None
SRR2101786 Sensitive lineage4.4.1.1 None
SRR2101802 Sensitive lineage4.4.1.1 None
SRR21728726 HR-TB lineage1.2.1.2.1 None
SRR2101816 Other lineage4.8 None
SRR21675637 Sensitive lineage4.3.3 None
SRR21686114 Other lineage3.1.3 None
SRR21714045 HR-TB lineage2.2.1 None
SRR2101803 Sensitive lineage4.3.3 None
SRR3675485 Other lineage2.2.1 None
SRR22048392 Other lineage4.8 None
SRR22424910 HR-TB lineage4.5 None
ERR4815171 HR-TB lineage1.1.2 None
SRR21798279 MDR-TB lineage2.2.1 None
SRR3675256 Other lineage4.7 None
ERR1665403 MDR-TB lineage2.2.1 None
SRR3675491 Other lineage4.7 None
SRR3105736 Other lineage1.2.2.2 None
SRR3675538 Other lineage4.8 None
ERR2179834 Other lineage3 None
SRR3675288 Other lineage3 None
ERR2179857 RR-TB lineage4 None
SRR3675451 Sensitive lineage4.1.2.1 None
SRR3675452 Other lineage3 None
SRR3675512 Other lineage2.2.1 None
SRR3675261 Other lineage1.2.1.1 None
SRR3675282 Other None
SRR3675287 Other lineage3 None
ERR2027256 Other lineage4.1.2 None
ERR2027252 Other lineage4.8;lineage4.2.1.1 None
ERR2027290 RR-TB lineage3.1 None
ERR2027293 Other lineage4.3.4.2 None
SRR3675565 Other lineage3 None
SRR3675556 Other lineage3 None
SRR5007161 RR-TB lineage4.1.1.3.1 None
ERR4816677 Other lineage4.5 None
SRR5007170 RR-TB lineage4.9 None
SRR5007167 RR-TB lineage4.1.1.3.1 None
SRR5007165 MDR-TB lineage3 None
SRR5007168 RR-TB lineage4.9 None
SRR5007169 RR-TB lineage4.8.2 None
ERR2513924 RR-TB lineage4.8 None
SRR5007174 Other lineage4.3.4.1 None
SRR5007180 Other None
SRR2101709 Sensitive lineage4.1.1.3 None
SRR2101659 Other lineage4.4.1.1.1 None
SRR6045496 Other lineage6.1.3 None
ERR2693238 HR-TB lineage4.9 None
SRR6045424 Other lineage1.1.2 None
SRR6045445 Other lineage4.3.1.1 None
SRR6045422 Other lineage4.3.1.1 None
SRR5486086 Other La1.2 None
SRR6045516 Other lineage3.1.1 None
SRR6045591 Other lineage4.1.2.1 None
ERR2660505 Other lineage1.2.2.1 None
SRR6045553 RR-TB lineage4.9 None
SRR6045613 Other lineage3.1.3 None
SRR6045603 RR-TB lineage4.1.1.3 None
SRR6045683 Other lineage3.1.2 None
SRR6045618 Other lineage3.1.2 None
SRR5818389 Other lineage4.9 None
SRR6045743 Other lineage3 None
SRR6045726 Other lineage3 None
SRR6046152 Other lineage4.9 None
SRR5818610 Other lineage3 None
SRR5818586 RR-TB lineage4.2.2.2 None