TB-Profiler result

Run: SRR6982077
Summary

Run ID: SRR6982077

Sample name:

Date: 04-04-2023 18:26:37

Number of reads: 172351

Percentage reads mapped: 16.94

Strain: lineage4.3.2.1

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.3.2 Euro-American (LAM) LAM3 None 0.99
lineage4.3.2.1 Euro-American (LAM) LAM3 RD761 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761139 p.His445Asn missense_variant 0.4 rifampicin
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.22 streptomycin
katG 2155650 c.461delA frameshift_variant 0.67 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5520 p.Pro94Leu missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8156 c.855T>C synonymous_variant 0.22
gyrA 8168 c.867A>G synonymous_variant 0.22
gyrA 8177 c.876A>C synonymous_variant 0.22
gyrA 8189 c.888G>C synonymous_variant 0.22
gyrA 8198 c.897T>C synonymous_variant 0.17
gyrA 8207 c.906T>C synonymous_variant 0.17
gyrA 8219 c.918T>C synonymous_variant 0.17
gyrA 8225 c.924T>C synonymous_variant 0.18
gyrA 8234 c.933T>C synonymous_variant 0.15
gyrA 8237 c.936A>G synonymous_variant 0.15
gyrA 8247 p.Ile316Val missense_variant 0.17
gyrA 8264 c.963T>C synonymous_variant 0.15
gyrA 8267 c.966G>C synonymous_variant 0.15
gyrA 8270 c.969G>C synonymous_variant 0.15
gyrA 8283 p.Ile328Leu missense_variant 0.15
gyrA 8288 c.987T>C synonymous_variant 0.15
gyrA 8294 c.993T>C synonymous_variant 0.15
gyrA 8318 c.1017C>G synonymous_variant 0.17
gyrA 8324 c.1023T>C synonymous_variant 0.17
gyrA 8327 c.1026C>T synonymous_variant 0.17
gyrA 8330 c.1029C>G synonymous_variant 0.17
gyrA 8339 c.1038A>G synonymous_variant 0.17
gyrA 8342 c.1041G>C synonymous_variant 0.17
gyrA 8366 c.1065G>C synonymous_variant 0.15
gyrA 8947 p.Leu549Ser missense_variant 0.14
gyrA 9304 p.Gly668Asp missense_variant 1.0
mshA 576042 c.697delG frameshift_variant 0.22
ccsA 619788 c.-103G>A upstream_gene_variant 0.5
ccsA 620145 p.Tyr85* stop_gained 0.22
ccsA 620362 p.Ala158Thr missense_variant 0.15
ccsA 620367 c.477T>C synonymous_variant 0.14
ccsA 620373 c.483C>G synonymous_variant 0.14
ccsA 620385 c.495G>C synonymous_variant 0.15
ccsA 620388 c.498A>G synonymous_variant 0.15
ccsA 620411 p.Ile174Thr missense_variant 0.14
ccsA 620415 c.525T>C synonymous_variant 0.15
ccsA 620433 c.543C>G synonymous_variant 0.15
ccsA 620436 c.546T>A synonymous_variant 0.15
ccsA 620439 c.549T>C synonymous_variant 0.15
ccsA 620442 c.552G>C synonymous_variant 0.14
ccsA 620445 c.555A>G synonymous_variant 0.14
ccsA 620460 c.570T>G synonymous_variant 0.15
ccsA 620461 p.Val191Ile missense_variant 0.15
ccsA 620481 c.591T>G synonymous_variant 0.17
ccsA 620482 p.Val198Leu missense_variant 0.17
rpoC 764995 c.1626C>G synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776742 p.Pro580His missense_variant 0.25
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781571 c.12C>T synonymous_variant 0.2
rpsL 781584 p.Arg9Ser missense_variant 0.22
rpsL 781595 c.36T>C synonymous_variant 0.25
rpsL 781605 p.Ile16Val missense_variant 0.25
rpsL 781608 p.Ser17Ala missense_variant 0.25
rpsL 781628 c.69T>C synonymous_variant 0.25
rpsL 781631 c.72G>C synonymous_variant 0.25
rpsL 781649 c.90T>C synonymous_variant 0.22
rpsL 781655 c.96T>C synonymous_variant 0.18
rpsL 781658 c.99A>G synonymous_variant 0.22
rpsL 781700 c.141G>C synonymous_variant 0.22
rpsL 781715 c.156T>C synonymous_variant 0.18
rpsL 781728 c.169T>C synonymous_variant 0.2
rpsL 781736 c.177T>C synonymous_variant 0.2
rpsL 781742 c.183C>T synonymous_variant 0.2
rpsL 781748 c.189C>G synonymous_variant 0.2
rpsL 781754 c.195G>C synonymous_variant 0.22
rpsL 781760 c.201T>C synonymous_variant 0.2
rpsL 781769 c.210G>A synonymous_variant 0.18
rpsL 781772 c.213C>G synonymous_variant 0.18
rplC 800887 p.Thr27Ser missense_variant 0.2
fbiC 1303784 p.Gly285Val missense_variant 0.17
fbiC 1304642 p.Lys571Arg missense_variant 0.25
fbiC 1305316 p.Thr796Ser missense_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471896 n.51T>C non_coding_transcript_exon_variant 0.2
rrs 1471900 n.55C>T non_coding_transcript_exon_variant 0.22
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.25
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.25
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.25
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.44
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.55
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.55
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.54
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.45
rrs 1472300 n.455C>T non_coding_transcript_exon_variant 0.22
rrs 1472337 n.492C>T non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.2
rrs 1472378 n.533G>T non_coding_transcript_exon_variant 0.27
rrs 1472501 n.656G>A non_coding_transcript_exon_variant 0.23
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.67
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.72
rrs 1472518 n.673G>C non_coding_transcript_exon_variant 0.72
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.77
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.77
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.77
rrs 1472544 n.699C>G non_coding_transcript_exon_variant 0.78
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.78
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.81
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.83
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.83
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.83
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.83
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.87
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.82
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.79
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.8
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.8
rrs 1472669 n.824_825insTAGA non_coding_transcript_exon_variant 0.81
rrs 1472678 n.833T>G non_coding_transcript_exon_variant 0.81
rrs 1472679 n.834T>C non_coding_transcript_exon_variant 0.81
rrs 1472682 n.839_843delGGGAT non_coding_transcript_exon_variant 0.8
rrs 1472689 n.844C>T non_coding_transcript_exon_variant 0.8
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.8
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.79
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.78
rrs 1472701 n.856T>A non_coding_transcript_exon_variant 0.79
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.82
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.83
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.81
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.82
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.82
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.8
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.68
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.68
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.56
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.5
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.5
rrs 1472836 n.991G>C non_coding_transcript_exon_variant 0.43
rrs 1472837 n.992_993insTCTG non_coding_transcript_exon_variant 0.43
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.41
rrs 1472861 n.1016G>C non_coding_transcript_exon_variant 0.41
rrs 1472873 n.1028C>G non_coding_transcript_exon_variant 0.41
rrs 1472875 n.1030T>A non_coding_transcript_exon_variant 0.43
rrs 1472877 n.1032T>A non_coding_transcript_exon_variant 0.43
rrs 1472880 n.1035_1036insA non_coding_transcript_exon_variant 0.52
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.7
rrs 1472953 n.1108_1109insA non_coding_transcript_exon_variant 0.69
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.69
rrs 1472958 n.1114delT non_coding_transcript_exon_variant 0.67
rrs 1472969 n.1125_1126delCG non_coding_transcript_exon_variant 0.67
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.67
rrs 1472974 n.1129A>C non_coding_transcript_exon_variant 0.66
rrs 1472975 n.1130T>A non_coding_transcript_exon_variant 0.66
rrs 1472977 n.1132G>T non_coding_transcript_exon_variant 0.65
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.7
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.7
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.71
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.76
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.76
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.77
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.78
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.77
rrs 1473080 n.1235C>G non_coding_transcript_exon_variant 0.74
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.73
rrs 1473084 n.1239T>A non_coding_transcript_exon_variant 0.72
rrs 1473094 n.1249T>A non_coding_transcript_exon_variant 0.77
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.77
rrs 1473109 n.1264T>C non_coding_transcript_exon_variant 0.76
rrs 1473115 n.1270G>C non_coding_transcript_exon_variant 0.76
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.76
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.75
rrs 1473123 n.1278A>C non_coding_transcript_exon_variant 0.75
rrs 1473127 n.1282G>T non_coding_transcript_exon_variant 0.76
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.78
rrs 1473131 n.1286G>T non_coding_transcript_exon_variant 0.78
rrs 1473147 n.1302G>C non_coding_transcript_exon_variant 0.74
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.75
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.75
rrs 1473164 n.1319C>G non_coding_transcript_exon_variant 0.75
rrs 1473172 n.1327T>C non_coding_transcript_exon_variant 0.72
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.72
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.72
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.7
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.67
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.36
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.36
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.37
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.37
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.37
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.37
rrs 1473274 n.1429C>T non_coding_transcript_exon_variant 0.36
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.36
rrs 1473280 n.1435G>A non_coding_transcript_exon_variant 0.36
rrs 1473281 n.1436C>G non_coding_transcript_exon_variant 0.36
rrs 1473282 n.1437C>G non_coding_transcript_exon_variant 0.36
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 0.38
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.38
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.38
rrs 1473296 n.1451G>C non_coding_transcript_exon_variant 0.38
rrs 1473297 n.1452G>C non_coding_transcript_exon_variant 0.38
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.41
rrs 1473303 n.1458T>C non_coding_transcript_exon_variant 0.41
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.41
rrs 1473316 n.1471C>A non_coding_transcript_exon_variant 0.41
rrs 1473318 n.1473G>A non_coding_transcript_exon_variant 0.39
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.39
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.42
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.42
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.48
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.22
rrl 1474747 n.1090C>A non_coding_transcript_exon_variant 0.36
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.56
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.77
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.75
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.75
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.8
rrl 1474797 n.1140_1141insTATA non_coding_transcript_exon_variant 0.73
rrl 1474800 n.1144_1147delGTGC non_coding_transcript_exon_variant 0.8
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.69
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.59
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.59
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.59
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.67
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.74
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.71
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.71
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.71
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.67
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.67
rrl 1474913 n.1256T>A non_coding_transcript_exon_variant 0.67
rrl 1474920 n.1263G>C non_coding_transcript_exon_variant 0.57
rrl 1474964 n.1307T>C non_coding_transcript_exon_variant 0.33
rrl 1475028 n.1371G>A non_coding_transcript_exon_variant 0.4
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.29
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.17
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.18
rrl 1475672 n.2015C>G non_coding_transcript_exon_variant 0.14
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.14
rrl 1475687 n.2030C>T non_coding_transcript_exon_variant 0.17
rrl 1475688 n.2031G>C non_coding_transcript_exon_variant 0.17
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.17
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.17
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.17
rrl 1475707 n.2050T>A non_coding_transcript_exon_variant 0.17
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.17
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.17
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.2
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.33
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.5
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.5
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 0.3
rrl 1475866 n.2209T>A non_coding_transcript_exon_variant 0.27
rrl 1476044 n.2387T>C non_coding_transcript_exon_variant 0.25
rrl 1476126 n.2469C>T non_coding_transcript_exon_variant 0.25
rrl 1476128 n.2471T>A non_coding_transcript_exon_variant 0.25
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.44
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.5
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.71
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.8
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.86
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.86
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.86
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.86
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.86
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.86
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.86
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.8
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.8
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.8
rrl 1476214 n.2557G>C non_coding_transcript_exon_variant 0.8
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.8
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.9
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.93
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.95
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.94
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.93
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.93
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.93
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.93
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.92
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.93
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.91
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.92
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.92
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.92
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.93
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.95
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.94
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.96
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.96
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.96
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.95
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.95
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.95
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.95
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.94
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.94
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.92
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.88
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.86
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.86
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.86
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.86
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.86
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.86
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.86
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.86
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.86
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.87
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.87
rrl 1476573 n.2916A>C non_coding_transcript_exon_variant 0.85
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.84
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.78
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.73
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.74
rrl 1476601 n.2944G>A non_coding_transcript_exon_variant 0.72
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.68
rrl 1476614 n.2957A>G non_coding_transcript_exon_variant 0.56
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.48
rrl 1476621 n.2964C>T non_coding_transcript_exon_variant 0.32
rrl 1476624 n.2967T>G non_coding_transcript_exon_variant 0.32
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.32
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.32
rrl 1476637 n.2980C>G non_coding_transcript_exon_variant 0.33
rrl 1476638 n.2981C>T non_coding_transcript_exon_variant 0.33
rpsA 1834465 c.924T>C synonymous_variant 0.14
rpsA 1834468 c.927A>G synonymous_variant 0.13
rpsA 1834489 c.948T>C synonymous_variant 0.17
rpsA 1834495 c.954G>A synonymous_variant 0.15
rpsA 1834499 c.958C>T synonymous_variant 0.15
rpsA 1834528 c.987T>C synonymous_variant 0.13
rpsA 1834540 c.999G>C synonymous_variant 0.13
rpsA 1834546 c.1005T>C synonymous_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918480 p.Val181Leu missense_variant 0.22
ndh 2102071 c.972C>T synonymous_variant 0.33
ndh 2103152 c.-110G>T upstream_gene_variant 0.17
katG 2156521 c.-410C>T upstream_gene_variant 0.17
katG 2156531 c.-420C>T upstream_gene_variant 0.18
PPE35 2170378 c.233_234delCG frameshift_variant 0.15
PPE35 2170772 c.-160C>T upstream_gene_variant 0.5
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2519230 c.1116C>T synonymous_variant 0.33
kasA 2519236 c.1122G>A synonymous_variant 0.33
kasA 2519239 c.1125A>C synonymous_variant 0.33
kasA 2519260 c.1146T>G synonymous_variant 0.4
kasA 2519263 c.1149C>T synonymous_variant 0.4
kasA 2519266 c.1152C>T synonymous_variant 0.4
kasA 2519269 c.1155C>T synonymous_variant 0.4
kasA 2519272 c.1158C>G synonymous_variant 0.4
kasA 2519281 c.1167G>T synonymous_variant 0.33
kasA 2519287 c.1173T>C synonymous_variant 0.33
kasA 2519295 p.Tyr394Phe missense_variant 0.4
kasA 2519299 c.1185C>T synonymous_variant 0.33
kasA 2519305 c.1191A>G synonymous_variant 0.33
kasA 2519306 p.Val398Ile missense_variant 0.33
kasA 2519323 c.1209G>T synonymous_variant 0.33
kasA 2519329 c.1215C>T synonymous_variant 0.33
kasA 2519338 c.1224T>C synonymous_variant 0.29
kasA 2519344 c.1230G>A synonymous_variant 0.29
kasA 2519347 c.1233T>C synonymous_variant 0.25
eis 2714146 p.Val396Asp missense_variant 0.14
ahpC 2726345 p.Phe51Leu missense_variant 0.14
Rv2752c 3065768 p.Glu142* stop_gained 0.29
Rv2752c 3066173 p.Pro7Thr missense_variant 0.2
thyX 3067276 p.Pro224Thr missense_variant 0.2
thyA 3073868 p.Thr202Ala missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339730 p.Pro205Ser missense_variant 0.22
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiB 3640773 c.-762C>A upstream_gene_variant 0.22
rpoA 3877476 c.1032C>A synonymous_variant 0.4
clpC1 4038245 c.2460C>T synonymous_variant 1.0
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4038908 c.1797C>G synonymous_variant 0.33
clpC1 4038914 c.1791G>C synonymous_variant 0.33
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.25
clpC1 4038953 c.1752A>G synonymous_variant 0.3
clpC1 4038956 c.1749T>C synonymous_variant 0.3
clpC1 4038965 c.1740T>C synonymous_variant 0.3
clpC1 4038971 c.1734T>C synonymous_variant 0.3
clpC1 4038974 c.1731T>C synonymous_variant 0.3
clpC1 4038989 c.1716T>C synonymous_variant 0.33
clpC1 4038997 c.1708T>C synonymous_variant 0.33
clpC1 4039022 c.1683A>G synonymous_variant 0.33
clpC1 4039064 c.1641C>T synonymous_variant 0.3
clpC1 4039781 c.924G>C synonymous_variant 0.17
clpC1 4039790 c.915C>G synonymous_variant 0.17
clpC1 4039805 c.900C>A synonymous_variant 0.18
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4248971 p.Lys820* stop_gained 0.22
embB 4249353 p.Arg947Leu missense_variant 0.29
aftB 4268772 p.Trp22Ser missense_variant 0.2
aftB 4269057 c.-221C>A upstream_gene_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0