Run ID: SRR6982077
Sample name:
Date: 04-04-2023 18:26:37
Number of reads: 172351
Percentage reads mapped: 16.94
Strain: lineage4.3.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None | 0.99 |
lineage4.3.2.1 | Euro-American (LAM) | LAM3 | RD761 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761139 | p.His445Asn | missense_variant | 0.4 | rifampicin |
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.22 | streptomycin |
katG | 2155650 | c.461delA | frameshift_variant | 0.67 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5520 | p.Pro94Leu | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8156 | c.855T>C | synonymous_variant | 0.22 |
gyrA | 8168 | c.867A>G | synonymous_variant | 0.22 |
gyrA | 8177 | c.876A>C | synonymous_variant | 0.22 |
gyrA | 8189 | c.888G>C | synonymous_variant | 0.22 |
gyrA | 8198 | c.897T>C | synonymous_variant | 0.17 |
gyrA | 8207 | c.906T>C | synonymous_variant | 0.17 |
gyrA | 8219 | c.918T>C | synonymous_variant | 0.17 |
gyrA | 8225 | c.924T>C | synonymous_variant | 0.18 |
gyrA | 8234 | c.933T>C | synonymous_variant | 0.15 |
gyrA | 8237 | c.936A>G | synonymous_variant | 0.15 |
gyrA | 8247 | p.Ile316Val | missense_variant | 0.17 |
gyrA | 8264 | c.963T>C | synonymous_variant | 0.15 |
gyrA | 8267 | c.966G>C | synonymous_variant | 0.15 |
gyrA | 8270 | c.969G>C | synonymous_variant | 0.15 |
gyrA | 8283 | p.Ile328Leu | missense_variant | 0.15 |
gyrA | 8288 | c.987T>C | synonymous_variant | 0.15 |
gyrA | 8294 | c.993T>C | synonymous_variant | 0.15 |
gyrA | 8318 | c.1017C>G | synonymous_variant | 0.17 |
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.17 |
gyrA | 8327 | c.1026C>T | synonymous_variant | 0.17 |
gyrA | 8330 | c.1029C>G | synonymous_variant | 0.17 |
gyrA | 8339 | c.1038A>G | synonymous_variant | 0.17 |
gyrA | 8342 | c.1041G>C | synonymous_variant | 0.17 |
gyrA | 8366 | c.1065G>C | synonymous_variant | 0.15 |
gyrA | 8947 | p.Leu549Ser | missense_variant | 0.14 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576042 | c.697delG | frameshift_variant | 0.22 |
ccsA | 619788 | c.-103G>A | upstream_gene_variant | 0.5 |
ccsA | 620145 | p.Tyr85* | stop_gained | 0.22 |
ccsA | 620362 | p.Ala158Thr | missense_variant | 0.15 |
ccsA | 620367 | c.477T>C | synonymous_variant | 0.14 |
ccsA | 620373 | c.483C>G | synonymous_variant | 0.14 |
ccsA | 620385 | c.495G>C | synonymous_variant | 0.15 |
ccsA | 620388 | c.498A>G | synonymous_variant | 0.15 |
ccsA | 620411 | p.Ile174Thr | missense_variant | 0.14 |
ccsA | 620415 | c.525T>C | synonymous_variant | 0.15 |
ccsA | 620433 | c.543C>G | synonymous_variant | 0.15 |
ccsA | 620436 | c.546T>A | synonymous_variant | 0.15 |
ccsA | 620439 | c.549T>C | synonymous_variant | 0.15 |
ccsA | 620442 | c.552G>C | synonymous_variant | 0.14 |
ccsA | 620445 | c.555A>G | synonymous_variant | 0.14 |
ccsA | 620460 | c.570T>G | synonymous_variant | 0.15 |
ccsA | 620461 | p.Val191Ile | missense_variant | 0.15 |
ccsA | 620481 | c.591T>G | synonymous_variant | 0.17 |
ccsA | 620482 | p.Val198Leu | missense_variant | 0.17 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776742 | p.Pro580His | missense_variant | 0.25 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781571 | c.12C>T | synonymous_variant | 0.2 |
rpsL | 781584 | p.Arg9Ser | missense_variant | 0.22 |
rpsL | 781595 | c.36T>C | synonymous_variant | 0.25 |
rpsL | 781605 | p.Ile16Val | missense_variant | 0.25 |
rpsL | 781608 | p.Ser17Ala | missense_variant | 0.25 |
rpsL | 781628 | c.69T>C | synonymous_variant | 0.25 |
rpsL | 781631 | c.72G>C | synonymous_variant | 0.25 |
rpsL | 781649 | c.90T>C | synonymous_variant | 0.22 |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.18 |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.22 |
rpsL | 781700 | c.141G>C | synonymous_variant | 0.22 |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.18 |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.2 |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.2 |
rpsL | 781742 | c.183C>T | synonymous_variant | 0.2 |
rpsL | 781748 | c.189C>G | synonymous_variant | 0.2 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.22 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.2 |
rpsL | 781769 | c.210G>A | synonymous_variant | 0.18 |
rpsL | 781772 | c.213C>G | synonymous_variant | 0.18 |
rplC | 800887 | p.Thr27Ser | missense_variant | 0.2 |
fbiC | 1303784 | p.Gly285Val | missense_variant | 0.17 |
fbiC | 1304642 | p.Lys571Arg | missense_variant | 0.25 |
fbiC | 1305316 | p.Thr796Ser | missense_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471896 | n.51T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1471900 | n.55C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472300 | n.455C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472378 | n.533G>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472501 | n.656G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472518 | n.673G>C | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472544 | n.699C>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472669 | n.824_825insTAGA | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472678 | n.833T>G | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472679 | n.834T>C | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472682 | n.839_843delGGGAT | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472701 | n.856T>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472836 | n.991G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472837 | n.992_993insTCTG | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472860 | n.1015C>G | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472861 | n.1016G>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472873 | n.1028C>G | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472875 | n.1030T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472877 | n.1032T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472880 | n.1035_1036insA | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472953 | n.1108_1109insA | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472958 | n.1114delT | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472969 | n.1125_1126delCG | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472974 | n.1129A>C | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472975 | n.1130T>A | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472977 | n.1132G>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473080 | n.1235C>G | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473082 | n.1237G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473084 | n.1239T>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1473094 | n.1249T>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473099 | n.1254T>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473109 | n.1264T>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473115 | n.1270G>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473123 | n.1278A>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473127 | n.1282G>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473129 | n.1284C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473131 | n.1286G>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473147 | n.1302G>C | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473164 | n.1319C>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473172 | n.1327T>C | non_coding_transcript_exon_variant | 0.72 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473260 | n.1415G>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473274 | n.1429C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473280 | n.1435G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473281 | n.1436C>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473282 | n.1437C>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473288 | n.1443C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473296 | n.1451G>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473297 | n.1452G>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473303 | n.1458T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473315 | n.1470T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473316 | n.1471C>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473318 | n.1473G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473327 | n.1482A>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473328 | n.1483C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473352 | n.1507C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474747 | n.1090C>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.56 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474797 | n.1140_1141insTATA | non_coding_transcript_exon_variant | 0.73 |
rrl | 1474800 | n.1144_1147delGTGC | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.69 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.59 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474920 | n.1263G>C | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474964 | n.1307T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475028 | n.1371G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475672 | n.2015C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475673 | n.2016T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475687 | n.2030C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475688 | n.2031G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475696 | n.2039T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475707 | n.2050T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475713 | n.2056C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476044 | n.2387T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476126 | n.2469C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476128 | n.2471T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476135 | n.2478T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476596 | n.2939C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476601 | n.2944G>A | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476607 | n.2950C>T | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476614 | n.2957A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476621 | n.2964C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476624 | n.2967T>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476637 | n.2980C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476638 | n.2981C>T | non_coding_transcript_exon_variant | 0.33 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.14 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.13 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.17 |
rpsA | 1834495 | c.954G>A | synonymous_variant | 0.15 |
rpsA | 1834499 | c.958C>T | synonymous_variant | 0.15 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.13 |
rpsA | 1834540 | c.999G>C | synonymous_variant | 0.13 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918480 | p.Val181Leu | missense_variant | 0.22 |
ndh | 2102071 | c.972C>T | synonymous_variant | 0.33 |
ndh | 2103152 | c.-110G>T | upstream_gene_variant | 0.17 |
katG | 2156521 | c.-410C>T | upstream_gene_variant | 0.17 |
katG | 2156531 | c.-420C>T | upstream_gene_variant | 0.18 |
PPE35 | 2170378 | c.233_234delCG | frameshift_variant | 0.15 |
PPE35 | 2170772 | c.-160C>T | upstream_gene_variant | 0.5 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519230 | c.1116C>T | synonymous_variant | 0.33 |
kasA | 2519236 | c.1122G>A | synonymous_variant | 0.33 |
kasA | 2519239 | c.1125A>C | synonymous_variant | 0.33 |
kasA | 2519260 | c.1146T>G | synonymous_variant | 0.4 |
kasA | 2519263 | c.1149C>T | synonymous_variant | 0.4 |
kasA | 2519266 | c.1152C>T | synonymous_variant | 0.4 |
kasA | 2519269 | c.1155C>T | synonymous_variant | 0.4 |
kasA | 2519272 | c.1158C>G | synonymous_variant | 0.4 |
kasA | 2519281 | c.1167G>T | synonymous_variant | 0.33 |
kasA | 2519287 | c.1173T>C | synonymous_variant | 0.33 |
kasA | 2519295 | p.Tyr394Phe | missense_variant | 0.4 |
kasA | 2519299 | c.1185C>T | synonymous_variant | 0.33 |
kasA | 2519305 | c.1191A>G | synonymous_variant | 0.33 |
kasA | 2519306 | p.Val398Ile | missense_variant | 0.33 |
kasA | 2519323 | c.1209G>T | synonymous_variant | 0.33 |
kasA | 2519329 | c.1215C>T | synonymous_variant | 0.33 |
kasA | 2519338 | c.1224T>C | synonymous_variant | 0.29 |
kasA | 2519344 | c.1230G>A | synonymous_variant | 0.29 |
kasA | 2519347 | c.1233T>C | synonymous_variant | 0.25 |
eis | 2714146 | p.Val396Asp | missense_variant | 0.14 |
ahpC | 2726345 | p.Phe51Leu | missense_variant | 0.14 |
Rv2752c | 3065768 | p.Glu142* | stop_gained | 0.29 |
Rv2752c | 3066173 | p.Pro7Thr | missense_variant | 0.2 |
thyX | 3067276 | p.Pro224Thr | missense_variant | 0.2 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339730 | p.Pro205Ser | missense_variant | 0.22 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3640773 | c.-762C>A | upstream_gene_variant | 0.22 |
rpoA | 3877476 | c.1032C>A | synonymous_variant | 0.4 |
clpC1 | 4038245 | c.2460C>T | synonymous_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.33 |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.33 |
clpC1 | 4038923 | c.1780_1782delCTAinsTTG | synonymous_variant | 0.25 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.3 |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.3 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.3 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.3 |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.3 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.33 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.33 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.33 |
clpC1 | 4039064 | c.1641C>T | synonymous_variant | 0.3 |
clpC1 | 4039781 | c.924G>C | synonymous_variant | 0.17 |
clpC1 | 4039790 | c.915C>G | synonymous_variant | 0.17 |
clpC1 | 4039805 | c.900C>A | synonymous_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4248971 | p.Lys820* | stop_gained | 0.22 |
embB | 4249353 | p.Arg947Leu | missense_variant | 0.29 |
aftB | 4268772 | p.Trp22Ser | missense_variant | 0.2 |
aftB | 4269057 | c.-221C>A | upstream_gene_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |