EBG00000313339 - n.2478T>C
Drug resistance types
107 Sensitive
27 RR-TB
15 HR-TB
40 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
158 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4;La1 | 1 |
| lineage4.1.2.1 | 14 |
| La1.8.1 | 25 |
| lineage4.3.4.1 | 7 |
| La1.8 | 1 |
| 8 | |
| La1.7.1 | 4 |
| lineage4.9;La1.8 | 1 |
| La1 | 1 |
| lineage4.9 | 52 |
| La1.3 | 3 |
| lineage4.2.1 | 2 |
| lineage2.2.1 | 65 |
| La1.2 | 3 |
| lineage4 | 15 |
| lineage4.8 | 9 |
| lineage3.1.2 | 2 |
| lineage1.1.3.2 | 3 |
| lineage1.1.1 | 1 |
| lineage4.2.2.1 | 1 |
| lineage1.2.2.2 | 3 |
| lineage3 | 14 |
| lineage4.4.1.1 | 10 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2.1.1 | 5 |
| lineage4.3.3 | 12 |
| lineage4.3.4 | 2 |
| lineage2.2 | 4 |
| lineage4.3.4.2 | 4 |
| lineage1.1.3 | 2 |
| lineage3.1.1 | 5 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 2 |
| La1.4 | 2 |
| lineage2.2.2 | 2 |
| lineage4.1.1.3 | 6 |
| lineage4.3.2.1 | 10 |
| lineage4.9.1 | 1 |
| lineage4.1.1 | 9 |
| lineage1.2.1.2.1 | 2 |
| lineage4.5 | 2 |
| lineage4.3.4.2.1 | 5 |
| lineage4.6.1.1 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.7 | 4 |
| lineage1.2.1.1 | 1 |
| lineage4.6.2.2 | 3 |
| lineage3.1 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.8.2 | 1 |
| lineage4.3.3;lineage3 | 1 |
| lineage4.6 | 1 |
| lineage6.1.3 | 1 |
| lineage3.1.3 | 1 |
| lineage1.2.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.6.5 | 1 |
| lineage5.1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4;lineage2.2.1 | 1 |
| lineage4.4 | 1 |
| lineage4.4.1 | 1 |
| lineage4.3 | 1 |
| lineage4;lineage2 | 1 |
| lineage4.9;La1.8.1 | 1 |
| lineage6.3.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 356 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4187641 | Other | lineage4;La1 | None | ERR4178216 | Sensitive | lineage4.1.2.1 | None | ERR4187604 | RR-TB | La1.8.1 | None | ERR4178135 | Sensitive | lineage4.3.4.1 | None | ERR4187720 | Other | La1.8.1 | None | ERR4187819 | Other | La1.8 | None | ERR4187800 | Other | La1.8.1 | None | ERR4187916 | Other | La1.8.1 | None | ERR4187921 | Other | None | ERR4187995 | Other | La1.8.1 | None | ERR4187993 | Other | La1.8.1 | None | ERR4188021 | Other | La1.8.1 | None | ERR4188010 | Other | La1.8.1 | None | ERR4188035 | Other | La1.8.1 | None | ERR4450956 | Other | La1.7.1 | None | ERR4188255 | Other | lineage4.9;La1.8 | None | ERR4188372 | RR-TB | La1.8.1 | None | ERR4188396 | Sensitive | La1 | None | ERR4188187 | Other | La1.8.1 | None | ERR4188202 | Other | La1.8.1 | None | ERR4188330 | Other | La1.8.1 | None | ERR4188352 | Other | La1.8.1 | None | ERR4188375 | Sensitive | lineage4.9 | None | ERR4188381 | Other | La1.8.1 | None | ERR4188395 | Other | La1.8.1 | None | ERR4769412 | Sensitive | lineage4.9 | None | ERR473278 | Sensitive | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4627379 | Other | La1.8.1 | None | ERR4769424 | Sensitive | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769429 | Other | lineage4.9 | None | ERR4769470 | Sensitive | lineage4.9 | None | ERR4769505 | Other | lineage4.9 | None | ERR4769507 | Sensitive | lineage4.9 | None | ERR4769462 | Other | La1.3 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR4769525 | Sensitive | lineage4.9 | None | ERR4769546 | Other | La1.3 | None | ERR4769537 | Sensitive | lineage4.9 | None | ERR4769549 | Sensitive | lineage4.9 | None | ERR5864322 | MDR-TB | lineage4.2.1 | None | ERR5865118 | MDR-TB | lineage2.2.1 | None | ERR6201843 | Other | La1.2 | None | ERR6197036 | Other | lineage4 | None | ERR6201802 | Other | La1.2 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR6866186 | Sensitive | lineage4.8 | None | ERR6359064 | Sensitive | lineage4.9 | None | ERR6865773 | Sensitive | lineage4.1.2.1 | None | ERR6865839 | Sensitive | lineage4.3.4.1 | None | ERR9117714 | Other | lineage3.1.2 | None | ERR7821182 | Other | lineage1.1.3.2 | None | ERR6866821 | Sensitive | lineage4.1.2.1 | None | ERR718268 | Sensitive | lineage1.1.1 | None | ERR736805 | Sensitive | lineage2.2.1 | None | ERR7737918 | MDR-TB | lineage4.2.2.1 | None | ERR8025347 | Sensitive | lineage4.9 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117728 | Other | lineage3 | None | SRR1011488 | Other | lineage2.2.1 | None | ERR9786498 | Sensitive | lineage4.1.2.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR1019127 | Other | lineage4.9;lineage2.2 | None | SRR10869268 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR10315486 | MDR-TB | lineage2.2.1 | None | SRR10315603 | MDR-TB | lineage4.8 | None | SRR10482948 | Other | La1.8.1 | None | SRR10851730 | Other | lineage4.3.3 | None | SRR10869292 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315701 | MDR-TB | lineage4.3.3 | None | SRR10869074 | Sensitive | lineage2.2.1.1 | None | SRR1173113 | RR-TB | lineage4.3.4 | None | SRR11294512 | Other | La1.8.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR1181136 | Sensitive | lineage2.2 | None | SRR1184379 | Other | lineage4 | None | SRR1181250 | Other | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR12931719 | Other | lineage4.3.4.2 | None | SRR11871419 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972188 | MDR-TB | lineage2.2.1 | None | SRR11972323 | RR-TB | lineage1.1.3.2 | None | SRR11972420 | MDR-TB | lineage2.2.1 | None | SRR12199387 | Other | lineage1.1.3 | None | SRR12882669 | RR-TB | lineage3.1.1 | None | SRR1184383 | Other | lineage4.9 | None | SRR11972212 | MDR-TB | lineage2.2.1.1 | None | SRR12199409 | Other | lineage1.2.2.2 | None | SRR12199461 | Sensitive | lineage1.1.3.1 | None | SRR15368914 | MDR-TB | lineage2.2.1 | None | SRR13199734 | Other | La1.2 | None | SRR13199739 | Other | La1.7.1 | None | SRR13423578 | Other | lineage2.2.1 | None | SRR13423629 | MDR-TB | lineage2.2.1 | None | SRR13199746 | Other | La1.7.1 | None | SRR13423641 | MDR-TB | lineage2.2.1 | None | SRR13583519 | MDR-TB | lineage4.1.2 | None | SRR14782096 | MDR-TB | lineage2.2.1 | None | SRR16278292 | Other | La1.4 | None | SRR16278273 | Other | La1.4 | None | SRR16295788 | Other | lineage2.2.1 | None | SRR16295732 | Other | lineage2.2.1 | None | SRR16295783 | Other | lineage2.2.1 | None | SRR16295791 | Other | lineage2.2.1 | None | SRR16295814 | Other | lineage2.2.1 | None | SRR16295806 | Other | lineage2.2.1 | None | SRR16295809 | Other | lineage2.2.1 | None | SRR16295811 | Other | lineage2.2.1 | None | SRR16295826 | Other | lineage2.2.1 | None | SRR16295830 | Other | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR16295821 | Other | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR17856664 | Sensitive | lineage3 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR1791909 | Other | La1.7.1 | None | SRR18002907 | MDR-TB | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002932 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18149443 | Sensitive | lineage3 | None | SRR18149430 | Sensitive | lineage4.1.1.3 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18149455 | Sensitive | lineage4.1.2.1 | None | SRR18911138 | Other | lineage3 | None | SRR18911000 | Sensitive | lineage2.2.1 | None | SRR19576436 | Sensitive | None | SRR2101312 | MDR-TB | lineage2.2.1 | None | SRR2101628 | Other | lineage4.3.2.1 | None | SRR2101505 | MDR-TB | lineage4.9.1 | None | SRR2101617 | Other | lineage4.1.1 | None | SRR2101689 | Other | lineage4.3.4.1 | None | SRR2101681 | Sensitive | lineage4.8 | None | SRR2101685 | Sensitive | lineage4.9 | None | SRR2101684 | Other | lineage2.2.1.1 | None | SRR2101802 | Sensitive | lineage4.4.1.1 | None | SRR2101774 | Sensitive | lineage2.2.1 | None | SRR21659035 | Sensitive | lineage4.1.2.1 | None | SRR2101803 | Sensitive | lineage4.3.3 | None | SRR2101816 | Other | lineage4.8 | None | SRR21658570 | Sensitive | lineage4.9 | None | SRR21675637 | Sensitive | lineage4.3.3 | None | SRR21728710 | Other | lineage4.1.1.3 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SRR21711124 | Other | lineage1.1.3 | None | SRR21714045 | HR-TB | lineage2.2.1 | None | SRR21728339 | Other | lineage3 | None | SRR21728726 | HR-TB | lineage1.2.1.2.1 | None | SRR21675949 | Other | lineage4.3.3 | None | SRR21676929 | Other | lineage1.2.1.2.1 | None | ERR2229033 | Other | lineage4.8 | None | SRR21737226 | Sensitive | lineage4.5 | None | SRR21764250 | Other | lineage4.9 | None | ERR176780 | Sensitive | lineage4.9 | None | ERR190339 | Sensitive | lineage4.3.4.2.1 | None | ERR161014 | Sensitive | lineage4.3.4.2.1 | None | ERR1198988 | Sensitive | lineage4.6.1.1 | None | ERR181708 | RR-TB | lineage4;lineage1.1.2 | None | ERR161184 | Sensitive | lineage4.3.4.2.1 | None | SRR3675452 | Other | lineage3 | None | SRR3675491 | Other | lineage4.7 | None | ERR1665403 | MDR-TB | lineage2.2.1 | None | ERR176450 | Sensitive | lineage4.1.1 | None | SRR3675261 | Other | lineage1.2.1.1 | None | ERR2179857 | RR-TB | lineage4 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816129 | HR-TB | lineage4.6.2.2 | gb | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | ERR2179850 | Sensitive | lineage4 | None | ERR2041685 | MDR-TB | lineage2.2.1 | None | ERR2228859 | RR-TB | lineage4 | None | ERR4818766 | Other | lineage3 | gb | ERR2179695 | Sensitive | lineage4.5 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5341460 | Other | lineage3 | None | ERR4818629 | Other | lineage4.3.3;lineage3 | gb | SRR5007170 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR4819895 | Sensitive | lineage4.6 | gb | ERR4819980 | Other | lineage4.1.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR6045496 | Other | lineage6.1.3 | None | SAMN02350446 | Sensitive | lineage2.2.1 | None | ERR4819574 | Sensitive | lineage4.9 | None | SRR5341430 | Other | lineage3 | None | ERR4821137 | Sensitive | lineage4.3.4.1 | None | ERR2660495 | Sensitive | lineage1.2.2.2 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | ERR2660505 | Other | lineage1.2.2.1 | None | ERR4821198 | Other | lineage3 | gb | ERR4821373 | HR-TB | lineage4.1.2.1 | None | ERR4822240 | Other | lineage4.1.2.1 | gb | SRR6045618 | Other | lineage3.1.2 | None | SRR6045726 | Other | lineage3 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045909 | Other | lineage4.8 | None | SRR6046210 | Other | lineage4 | None | SRR6044841 | Other | lineage4.9 | None | SRR6044925 | Sensitive | lineage4.9 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6045124 | Other | lineage4.9 | None | SRR6045205 | Sensitive | lineage4.9 | None | ERR2851354 | RR-TB | lineage4.9 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046246 | Other | lineage3 | None | ERR2851359 | Other | lineage4.9 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046541 | Other | lineage4.9 | None | SRR6046646 | Other | lineage4.7 | gb | ERR2851371 | Other | lineage4.9 | None | SRR6046743 | Other | lineage3 | None | SRR6046739 | Other | lineage1.1.2 | None | SRR6511600 | MDR-TB | lineage4.3.4.2 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR502480 | Other | lineage5.1.1 | None | SRR6397727 | Other | lineage4.2.1.1 | None | ERR3148546 | Other | lineage4.3.2 | None | SRR6856087 | Sensitive | lineage4 | None | SRR6856119 | Sensitive | lineage2.2.1 | None | SRR6982088 | Other | lineage4.1.1.2 | None | SRR6856094 | Other | lineage2.2.1 | None | SRR6982102 | Other | lineage2.2.1 | None | SRR6896178 | Sensitive | lineage2.2.1 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR6982106 | Sensitive | lineage4.8 | None | SRR6982138 | Sensitive | lineage4 | None | SRR6982115 | Sensitive | lineage4 | None | SRR6982414 | Sensitive | lineage4.9 | None | SRR6982140 | Other | lineage2.2 | None | SRR6785301 | Sensitive | lineage2.2.1 | None | SRR6982139 | Sensitive | lineage4.9 | None | SRR6982418 | Sensitive | lineage4.1.1.3 | None | SRR6896339 | MDR-TB | lineage2.2.1 | None | SRR6896340 | HR-TB | lineage4.4.1.1 | None | SRR6982448 | Sensitive | lineage4;lineage2.2.1 | None | SRR6982427 | Sensitive | lineage4.1.1 | None | SRR6982229 | Sensitive | lineage2.2.1 | None | SRR6982178 | Sensitive | lineage2.2 | None | SRR6982195 | RR-TB | lineage4.4 | None | SRR6982272 | Sensitive | lineage4.9 | None | SRR6982275 | Other | lineage2.2.1 | None | SRR6982297 | Sensitive | lineage4.1.1 | None | SRR6807688 | Pre-XDR-TB | lineage4.2.1 | None | SRR6982313 | Sensitive | lineage4.3.4.2.1 | None | SRR6982465 | Sensitive | lineage4.3.4.2 | None | SRR6981912 | Sensitive | None | SRR6982472 | Sensitive | lineage4.4.1.1 | None | SRR6982349 | Sensitive | lineage2.2.1 | None | SRR6981962 | Sensitive | None | SRR6855721 | Sensitive | lineage4.3.2.1 | None | SRR6981922 | Sensitive | lineage4.3.2.1 | None | SRR6982362 | Other | lineage4.3.2.1 | None | SRR6981918 | Sensitive | lineage4.4.1 | None | SRR6982363 | Sensitive | lineage4.3.3 | None | SRR6982471 | Sensitive | lineage2.2.1 | None | SRR6982371 | Sensitive | lineage4.1.1 | None | SRR6981975 | Sensitive | lineage4.7 | None | SRR6981983 | Sensitive | lineage3.1.1 | None | SRR6981981 | Other | lineage4.3.3 | None | SRR6982383 | Other | lineage4.3.2.1 | None | SRR6981993 | Other | lineage4.3.2.1 | None | SRR6982011 | Other | lineage4.1.1 | None | SRR6982014 | Other | lineage4.1.1 | None | SRR6982385 | Sensitive | lineage4.1.2 | None | SRR6982022 | Sensitive | lineage4.4.1.1 | None | SRR6982026 | Sensitive | lineage4.3.3 | None | SRR6855915 | Sensitive | lineage4.9 | None | SRR6855963 | RR-TB | lineage2.2.1 | None | SRR6982035 | Sensitive | lineage4.9 | None | SRR6982398 | MDR-TB | lineage2.2 | None | SRR6982037 | Sensitive | lineage4.1.1 | None | SRR6982048 | HR-TB | lineage4.3.2.1 | None | SRR6982058 | HR-TB | lineage2.2.1 | None | SRR6982057 | Pre-XDR-TB | lineage4.3 | None | SRR6982050 | Sensitive | lineage4.3.4.1 | None | SRR6982066 | Other | lineage4.3.2.1 | None | SRR6982070 | RR-TB | None | SRR6982076 | Sensitive | lineage4.9 | None | SRR6982405 | Sensitive | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | SRR6856032 | Sensitive | lineage2.2.1 | None | ERR5162118 | Other | La1.8.1 | None | ERR5311076 | Other | La1.8.1 | None | ERR5162133 | Other | La1.8.1 | None | ERR5311080 | Other | La1.8.1 | None | SRR6982514 | Sensitive | lineage4.3.3 | None | ERR5311088 | Other | La1.8.1 | None | SRR6982510 | Sensitive | lineage4;lineage2 | None | ERR5311086 | Sensitive | lineage4.9;La1.8.1 | None | SRR6982509 | Sensitive | lineage4.3.2.1 | None | SRR6982558 | Other | lineage4.3.4.2 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131122 | Other | lineage2.2.1 | None | SRR9971243 | Pre-XDR-TB | lineage4.3.3 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131169 | Other | lineage4.1.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7131257 | Other | lineage6.3.1 | None | SRR9970983 | MDR-TB | lineage4.3.3 | None | SRR7516395 | MDR-TB | lineage2.2.1 | None | ERR036215 | Other | lineage4.8 | None | SRR8600217 | Other | La1.8.1 | None | SRR9971147 | RR-TB | lineage2.2.1 | None | SRR9971195 | MDR-TB | lineage4.3.3 | None | ERR323061 | Sensitive | lineage4.9 | None | ERR072033 | Sensitive | lineage3.1.2.2 | None | ERR037501 | Sensitive | lineage4.3.4.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR1023527 | RR-TB | lineage4 | None | ERR10219868 | Other | lineage4.1.2.1 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796592 | Other | lineage4 | None | ERR10796597 | Other | lineage4 | None | ERR10796634 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796625 | RR-TB | lineage4.4.1.1 | None | ERR10796630 | HR-TB | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR3261351 | Other | lineage4.9 | None | ERR1274704 | HR-TB | lineage4.1.1 | None | ERR3283028 | Other | None | ERR3261359 | Other | lineage4.9 | None | ERR3261389 | Other | lineage4.9 | None | ERR3324328 | MDR-TB | lineage2.2.1 | None | ERR3324329 | HR-TB | lineage4.1.1.3 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3324325 | MDR-TB | lineage4.6.2.2 | None | ERR3324347 | Sensitive | lineage4.1.2.1 | None | ERR3324351 | MDR-TB | lineage4.1.4 | None | ERR3324362 | HR-TB | lineage4.1.2.1 | None | ERR3324373 | MDR-TB | lineage2.2.1 | None | ERR3324375 | Other | lineage1.1.3.2 | None | ERR3335798 | MDR-TB | lineage2.2.1 | None |
|---|
