TB-Profiler result

Run: ERR4769419
Summary

Run ID: ERR4769419

Sample name:

Date: 01-04-2023 06:39:46

Number of reads: 24367

Percentage reads mapped: 0.88

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrB 6695 p.Ile486Leu missense_variant 1.0 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
gyrB 6738 p.Thr500Asn missense_variant 1.0 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6673 c.-629A>C upstream_gene_variant 1.0
gyrA 6676 c.-626T>G upstream_gene_variant 1.0
gyrA 6685 c.-617C>A upstream_gene_variant 1.0
gyrA 6700 c.-602T>C upstream_gene_variant 1.0
gyrA 6709 c.-593A>G upstream_gene_variant 1.0
gyrB 6710 p.Ala491Ser missense_variant 1.0
gyrB 6716 p.Ile493Leu missense_variant 1.0
gyrA 6724 c.-578G>C upstream_gene_variant 1.0
gyrB 6725 p.Val496Thr missense_variant 1.0
gyrA 6730 c.-572A>G upstream_gene_variant 1.0
gyrA 6742 c.-560A>G upstream_gene_variant 1.0
gyrA 6745 c.-557T>C upstream_gene_variant 1.0
gyrA 6775 c.-527G>C upstream_gene_variant 1.0
gyrA 6793 c.-509T>C upstream_gene_variant 1.0
gyrB 6798 p.Gly520Ala missense_variant 1.0
gyrA 6808 c.-494C>G upstream_gene_variant 1.0
rpoB 761150 c.1344A>C synonymous_variant 1.0
rpoB 761165 c.1359G>C synonymous_variant 1.0
rpoB 761174 c.1368T>C synonymous_variant 0.88
rpoB 761180 c.1374A>G synonymous_variant 1.0
rpoB 761183 c.1377T>C synonymous_variant 0.88
rpoB 761189 c.1383T>C synonymous_variant 1.0
rpoB 761195 c.1389G>C synonymous_variant 1.0
rpoB 761198 c.1392G>C synonymous_variant 1.0
rpoB 761213 c.1407G>C synonymous_variant 1.0
rpoB 761234 c.1428G>C synonymous_variant 1.0
rpoB 761249 c.1443A>G synonymous_variant 1.0
rpoB 761252 c.1446C>G synonymous_variant 0.88
rpoB 761255 c.1449T>G synonymous_variant 1.0
rpoB 761258 c.1452G>A synonymous_variant 0.88
rpoB 761261 c.1455G>C synonymous_variant 1.0
rpoB 761264 c.1458C>G synonymous_variant 1.0
rpoB 761273 c.1467T>C synonymous_variant 1.0
rpoB 761294 c.1488G>C synonymous_variant 1.0
rpoB 761300 c.1494G>C synonymous_variant 1.0
rpoB 761303 c.1497G>C synonymous_variant 1.0
rpoB 761306 c.1500C>G synonymous_variant 1.0
rpoB 761948 c.2142G>C synonymous_variant 1.0
rpoB 761951 c.2145G>C synonymous_variant 1.0
rpoB 761955 p.Ile717Phe missense_variant 1.0
rpoB 761998 c.2193_2195delGTC disruptive_inframe_deletion 1.0
rpoB 762005 c.2200_2201insAGC disruptive_inframe_insertion 1.0
rpoB 762009 p.Leu735Met missense_variant 1.0
rpoB 762014 c.2208C>G synonymous_variant 1.0
rpoB 762017 c.2211A>G synonymous_variant 1.0
rpoB 762020 p.Glu738Asp missense_variant 1.0
rpoB 762024 p.Val740Ile missense_variant 1.0
rpoB 762053 c.2247T>C synonymous_variant 1.0
rpoB 762065 c.2259T>G synonymous_variant 1.0
rpoB 762850 p.Tyr1015Phe missense_variant 1.0
rpoC 762857 c.-513C>G upstream_gene_variant 1.0
rpoB 762858 p.Thr1018Ser missense_variant 1.0
rpoC 762863 c.-507T>G upstream_gene_variant 1.0
rpoB 762878 p.Ile1024Met missense_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoB 762905 p.Asp1033Glu missense_variant 1.0
rpoC 762920 c.-450C>T upstream_gene_variant 1.0
rpoC 762926 c.-444C>G upstream_gene_variant 1.0
rpoC 762929 c.-441G>C upstream_gene_variant 1.0
rpoC 762947 c.-423C>G upstream_gene_variant 1.0
rpoC 762965 c.-405T>C upstream_gene_variant 1.0
rpoC 762971 c.-399G>C upstream_gene_variant 1.0
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>C upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Val missense_variant 1.0
rpoC 763022 c.-348C>G upstream_gene_variant 1.0
rpoC 763025 c.-345C>T upstream_gene_variant 1.0
rpoC 763028 c.-342T>C upstream_gene_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoB 763074 p.Thr1090Val missense_variant 1.0
rpoC 763088 c.-282C>G upstream_gene_variant 1.0
rpoC 763094 c.-276G>C upstream_gene_variant 1.0
rpoC 763109 c.-261C>G upstream_gene_variant 1.0
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
rpoB 763118 p.Glu1104Asp missense_variant 1.0
rpoB 763130 p.Glu1108Asp missense_variant 1.0
rpoC 763133 c.-237G>C upstream_gene_variant 1.0
rpoC 763136 c.-234C>T upstream_gene_variant 1.0
rpoC 763142 c.-228C>G upstream_gene_variant 1.0
rpoC 763160 c.-210G>C upstream_gene_variant 1.0
rpoC 763166 c.-204A>G upstream_gene_variant 1.0
rpoC 763169 c.-201A>G upstream_gene_variant 1.0
rpoC 763172 c.-198G>C upstream_gene_variant 1.0
rpoC 763507 c.138G>C synonymous_variant 1.0
rpoC 763517 p.Lys50Arg missense_variant 1.0
rpoC 763528 c.159G>C synonymous_variant 1.0
rpoC 763531 c.162G>C synonymous_variant 1.0
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763550 p.Tyr61Ala missense_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 763573 c.204G>C synonymous_variant 1.0
rpoC 763576 c.207C>A synonymous_variant 1.0
rpoC 763619 p.Arg84Lys missense_variant 1.0
rpoC 763622 p.Ala85Ser missense_variant 1.0
rpoC 763633 c.264T>C synonymous_variant 1.0
rpoC 763636 c.267T>C synonymous_variant 1.0
rpoC 763642 c.273G>C synonymous_variant 1.0
rpoC 764227 c.858G>C synonymous_variant 1.0
rpoC 764239 c.870T>G synonymous_variant 1.0
rpoC 764254 c.885G>C synonymous_variant 1.0
rpoC 764263 c.894G>C synonymous_variant 1.0
rpoC 764266 c.897T>C synonymous_variant 1.0
rpoC 764269 c.900G>C synonymous_variant 1.0
rpoC 764277 p.Gln303Leu missense_variant 1.0
rpoC 764291 p.Ser308Asp missense_variant 1.0
rpoC 764297 p.Met310Ala missense_variant 1.0
rpoC 764301 p.Gly311Ala missense_variant 1.0
rpoC 764308 c.939G>C synonymous_variant 1.0
rpoC 764315 p.Ala316Cys missense_variant 1.0
rpoC 764365 c.996C>T synonymous_variant 1.0
rpoC 764371 c.1002G>T synonymous_variant 1.0
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764410 c.1041G>C synonymous_variant 1.0
rpoC 764428 c.1059G>C synonymous_variant 1.0
rpoC 764431 c.1062G>C synonymous_variant 1.0
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066A>C synonymous_variant 1.0
rpoC 764446 c.1077T>C synonymous_variant 1.0
rpoC 764449 c.1080G>C synonymous_variant 1.0
rpoC 764458 c.1089G>C synonymous_variant 1.0
rpoC 764461 c.1092A>G synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764503 c.1134G>C synonymous_variant 1.0
rpoC 764539 c.1170C>G synonymous_variant 1.0
rpoC 764548 c.1179G>A synonymous_variant 1.0
rpoC 764560 c.1191T>C synonymous_variant 1.0
rpoC 764566 c.1197C>G synonymous_variant 1.0
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764581 c.1212T>C synonymous_variant 1.0
rpoC 764605 c.1236G>T synonymous_variant 1.0
rpoC 764611 c.1242G>C synonymous_variant 1.0
rpoC 764623 c.1254C>G synonymous_variant 1.0
rpoC 764632 c.1263T>A synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764660 p.Val431Ile missense_variant 1.0
rpoC 764695 c.1326T>C synonymous_variant 1.0
rpoC 764923 c.1554A>G synonymous_variant 1.0
rpoC 764935 c.1566T>C synonymous_variant 1.0
rpoC 764948 c.1579T>C synonymous_variant 1.0
rpoC 764952 p.Val528Ala missense_variant 1.0
rpoC 764968 c.1599T>C synonymous_variant 1.0
rpoC 764983 c.1614T>C synonymous_variant 1.0
rpoC 765004 c.1635G>C synonymous_variant 1.0
rpoC 765007 c.1638T>G synonymous_variant 1.0
rpoC 765008 c.1639T>C synonymous_variant 1.0
rpoC 765011 c.1642_1643delAGinsTC synonymous_variant 1.0
rpoC 765016 c.1647C>G synonymous_variant 1.0
rpoC 765019 c.1650A>G synonymous_variant 1.0
rpoC 765034 c.1665T>C synonymous_variant 1.0
rpoC 765040 c.1671T>C synonymous_variant 1.0
rpoC 765041 c.1672T>C synonymous_variant 1.0
rpoC 765047 c.1678T>C synonymous_variant 1.0
rpoC 765055 c.1686C>G synonymous_variant 1.0
rpoC 765076 c.1707A>G synonymous_variant 1.0
rpoC 765079 c.1710T>C synonymous_variant 1.0
rpoC 765082 c.1713G>C synonymous_variant 1.0
rpoC 765083 p.Arg572Lys missense_variant 1.0
rpoC 765089 c.1720T>C synonymous_variant 1.0
rpoC 765103 c.1734G>A synonymous_variant 1.0
rpoC 766309 c.2940G>C synonymous_variant 1.0
rpoC 766331 p.Leu988Met missense_variant 1.0
rpoC 766345 c.2976T>C synonymous_variant 1.0
rpoC 766348 c.2979A>G synonymous_variant 1.0
rpoC 766354 c.2985C>G synonymous_variant 1.0
rpoC 766363 c.2994G>C synonymous_variant 1.0
rpoC 766369 c.3000C>G synonymous_variant 1.0
rpoC 766384 c.3015A>G synonymous_variant 1.0
rpoC 766393 c.3024C>G synonymous_variant 1.0
rpoC 766408 c.3039C>T synonymous_variant 1.0
rpoC 766423 c.3054T>C synonymous_variant 1.0
rpoC 766427 p.Val1020Ile missense_variant 0.5
rpoC 766432 c.3063T>C synonymous_variant 1.0
rpoC 766434 p.Glu1022Gly missense_variant 1.0
rpoC 766447 c.3078T>C synonymous_variant 1.0
rpoC 766459 c.3090G>A synonymous_variant 1.0
rpoC 766462 c.3093G>C synonymous_variant 1.0
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 1.0
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 1.0
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 1.0
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 1.0
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 1.0
rrs 1471972 n.127T>C non_coding_transcript_exon_variant 1.0
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 1.0
rrs 1472028 n.183A>G non_coding_transcript_exon_variant 1.0
rrs 1472054 n.210_212delCGC non_coding_transcript_exon_variant 1.0
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 1.0
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472085 n.240C>G non_coding_transcript_exon_variant 0.38
rrs 1472086 n.241T>C non_coding_transcript_exon_variant 0.38
rrs 1472089 n.244C>T non_coding_transcript_exon_variant 0.38
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.5
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.31
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 0.44
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.56
rrs 1472128 n.283G>C non_coding_transcript_exon_variant 0.33
rrs 1472129 n.284G>A non_coding_transcript_exon_variant 0.43
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.4
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.77
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.79
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472181 n.336G>A non_coding_transcript_exon_variant 0.35
rrs 1472223 n.378C>G non_coding_transcript_exon_variant 0.33
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 1.0
rrs 1472228 n.383G>C non_coding_transcript_exon_variant 0.29
rrs 1472278 n.433C>T non_coding_transcript_exon_variant 1.0
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 1.0
rrs 1472299 n.455_462delCCGGGTTC non_coding_transcript_exon_variant 1.0
rrs 1472309 n.464C>T non_coding_transcript_exon_variant 1.0
rrs 1472311 n.467_470delGGAT non_coding_transcript_exon_variant 1.0
rrs 1472325 n.480G>A non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.75
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 1.0
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.75
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 0.75
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.75
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.75
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 0.75
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 0.75
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.75
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.83
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.86
rrs 1472501 n.656G>A non_coding_transcript_exon_variant 0.3
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.67
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.64
rrs 1472518 n.673G>C non_coding_transcript_exon_variant 0.78
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.93
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.87
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.7
rrs 1472544 n.699C>G non_coding_transcript_exon_variant 0.79
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.53
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.89
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.57
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.91
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.39
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.84
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.89
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.87
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.35
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.93
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.92
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.79
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.55
rrs 1472669 n.824_825insTAGA non_coding_transcript_exon_variant 0.97
rrs 1472678 n.833T>G non_coding_transcript_exon_variant 0.9
rrs 1472679 n.834T>C non_coding_transcript_exon_variant 0.9
rrs 1472682 n.839_843delGGGAT non_coding_transcript_exon_variant 0.98
rrs 1472689 n.844C>T non_coding_transcript_exon_variant 0.68
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.98
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.68
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.9
rrs 1472701 n.856T>A non_coding_transcript_exon_variant 0.69
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.94
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.91
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.71
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.77
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.92
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.67
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.67
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.4
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 1.0
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 1.0
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 1.0
rrs 1472845 n.1000G>C non_coding_transcript_exon_variant 1.0
rrs 1472846 n.1001C>G non_coding_transcript_exon_variant 1.0
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 1.0
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 1.0
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 1.0
rrs 1472859 n.1014G>T non_coding_transcript_exon_variant 1.0
rrs 1472861 n.1016G>C non_coding_transcript_exon_variant 1.0
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 1.0
rrs 1472875 n.1030T>C non_coding_transcript_exon_variant 1.0
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 1.0
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472993 n.1148G>A non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.58
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.59
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.6
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.6
rrs 1473080 n.1235C>G non_coding_transcript_exon_variant 0.93
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.61
rrs 1473084 n.1239T>A non_coding_transcript_exon_variant 0.62
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.33
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.31
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.31
rrs 1473094 n.1249T>A non_coding_transcript_exon_variant 0.64
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.62
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.36
rrs 1473109 n.1264T>C non_coding_transcript_exon_variant 0.64
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.31
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.31
rrs 1473115 n.1270G>C non_coding_transcript_exon_variant 0.96
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.68
rrs 1473123 n.1278A>C non_coding_transcript_exon_variant 1.0
rrs 1473127 n.1282G>T non_coding_transcript_exon_variant 0.68
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.68
rrs 1473131 n.1286G>T non_coding_transcript_exon_variant 0.65
rrs 1473147 n.1302G>C non_coding_transcript_exon_variant 0.7
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.68
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.61
rrs 1473164 n.1319C>G non_coding_transcript_exon_variant 0.61
rrs 1473172 n.1327T>C non_coding_transcript_exon_variant 0.71
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.71
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.69
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.31
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.89
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.88
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 1.0
rrl 1474178 n.522dupC non_coding_transcript_exon_variant 1.0
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.94
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474289 n.632C>T non_coding_transcript_exon_variant 1.0
rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 1.0
rrl 1474487 n.830G>T non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>T non_coding_transcript_exon_variant 1.0
rrl 1474507 n.850G>C non_coding_transcript_exon_variant 1.0
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474740 n.1083G>T non_coding_transcript_exon_variant 0.5
rrl 1474747 n.1090C>A non_coding_transcript_exon_variant 0.77
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.83
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.83
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.81
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 1.0
rrl 1474797 n.1140_1141insTATA non_coding_transcript_exon_variant 1.0
rrl 1474800 n.1144_1147delGTGC non_coding_transcript_exon_variant 1.0
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 1.0
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.79
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.76
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.82
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.82
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.81
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 1.0
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.73
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.3
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>A non_coding_transcript_exon_variant 1.0
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 1.0
rrl 1474934 n.1277C>T non_coding_transcript_exon_variant 1.0
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 1.0
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 1.0
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 1.0
rrl 1475759 n.2102C>G non_coding_transcript_exon_variant 1.0
rrl 1475761 n.2106_2110delCAAGG non_coding_transcript_exon_variant 1.0
rrl 1475769 n.2112_2113insTTTGCCGGCC non_coding_transcript_exon_variant 1.0
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.88
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 1.0
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.89
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.95
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.95
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 1.0
rrl 1476100 n.2443A>C non_coding_transcript_exon_variant 0.93
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 1.0
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 1.0
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.93
rrl 1476116 n.2459A>G non_coding_transcript_exon_variant 0.93
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.41
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.48
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.6
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.37
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.33
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.87
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.63
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.64
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.63
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.62
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.63
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.63
rrl 1476214 n.2557G>C non_coding_transcript_exon_variant 0.96
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.97
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.81
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.85
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.84
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.81
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.82
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.83
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.83
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 1.0
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.84
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.82
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.82
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.82
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.87
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.85
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.91
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.92
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.91
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.8
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.81
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.89
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.99
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.66
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.82
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.92
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.9
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.87
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.86
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.85
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.86
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.86
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.86
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.88
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.87
rrl 1476573 n.2916A>C non_coding_transcript_exon_variant 1.0
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.72
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.98
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.89
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.78
rrl 1476601 n.2944G>A non_coding_transcript_exon_variant 0.79
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.88
rrl 1476614 n.2957A>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476624 n.2967T>A non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 1.0
rpsA 1834000 c.459G>C synonymous_variant 1.0
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834015 c.474G>C synonymous_variant 1.0
rpsA 1834030 c.489C>G synonymous_variant 1.0
rpsA 1834040 p.Lys167Gln missense_variant 1.0
rpsA 1834046 p.Ile169Leu missense_variant 1.0
rpsA 1834054 c.513C>G synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834456 c.915T>G synonymous_variant 1.0
rpsA 1834465 c.924T>C synonymous_variant 1.0
rpsA 1834468 c.927A>G synonymous_variant 1.0
rpsA 1834489 c.948T>C synonymous_variant 1.0
rpsA 1834504 c.963G>C synonymous_variant 1.0
rpsA 1834519 c.978G>T synonymous_variant 1.0
rpsA 1834603 p.Glu354Asp missense_variant 1.0
rpsA 1834609 c.1068T>C synonymous_variant 1.0
rpsA 1834612 c.1071G>C synonymous_variant 1.0
rpsA 1834618 c.1077G>C synonymous_variant 1.0
rpsA 1834619 c.1078T>C synonymous_variant 1.0
rpsA 1834627 c.1086C>G synonymous_variant 1.0
rpsA 1834633 c.1092A>G synonymous_variant 1.0
rpsA 1834637 p.Asn366Asp missense_variant 1.0
rpsA 1834647 p.Tyr369Phe missense_variant 1.0
rpsA 1834667 p.Ala376Thr missense_variant 1.0
rpsA 1834683 p.Ala381Gly missense_variant 1.0
rpsA 1834687 c.1146C>T synonymous_variant 1.0
rpsA 1834688 c.1147_1149delAGTinsTCC synonymous_variant 1.0
rpsA 1834720 c.1179C>G synonymous_variant 1.0
rpsA 1834732 c.1191T>C synonymous_variant 1.0
rpsA 1834735 c.1194C>G synonymous_variant 1.0
rpsA 1834738 c.1197A>G synonymous_variant 1.0
thyA 3073863 c.609T>C synonymous_variant 1.0
thyA 3073888 p.Ser195Glu missense_variant 1.0
thyA 3073892 c.580T>C synonymous_variant 1.0
thyA 3073896 c.576C>G synonymous_variant 1.0
thyA 3073902 p.Ala190Gln missense_variant 1.0
thyA 3073905 c.567C>G synonymous_variant 1.0
thyA 3073908 p.Met188Phe missense_variant 1.0
thyA 3073917 c.555C>G synonymous_variant 1.0
thyA 3073920 c.552C>G synonymous_variant 1.0
thyA 3073925 c.547T>C synonymous_variant 1.0
thyA 3073929 c.543T>C synonymous_variant 1.0
thyA 3073953 c.519T>A synonymous_variant 1.0
thyA 3073959 c.513T>C synonymous_variant 1.0
thyA 3073964 p.Leu170Met missense_variant 1.0
clpC1 4038725 c.1980C>G synonymous_variant 1.0
clpC1 4038743 p.Thr654Val missense_variant 1.0
clpC1 4038756 p.Gly650Ala missense_variant 1.0
clpC1 4038758 c.1947C>T synonymous_variant 1.0
clpC1 4038767 c.1938G>C synonymous_variant 1.0
clpC1 4038770 c.1935C>T synonymous_variant 1.0
clpC1 4038782 c.1923G>T synonymous_variant 1.0
clpC1 4038791 c.1914G>C synonymous_variant 1.0
clpC1 4038794 p.Ser637Thr missense_variant 1.0
clpC1 4038811 p.Gln632Lys missense_variant 1.0
clpC1 4038812 c.1893T>C synonymous_variant 1.0
clpC1 4038815 c.1890G>C synonymous_variant 1.0
clpC1 4038842 c.1863G>C synonymous_variant 1.0
clpC1 4038845 c.1860G>C synonymous_variant 1.0
clpC1 4038860 c.1845G>C synonymous_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4038905 c.1800A>C synonymous_variant 1.0
clpC1 4038908 c.1797C>G synonymous_variant 1.0
clpC1 4038914 c.1791G>C synonymous_variant 1.0
clpC1 4038917 c.1788C>T synonymous_variant 1.0
clpC1 4038923 c.1782A>G synonymous_variant 1.0
clpC1 4038926 c.1779G>C synonymous_variant 1.0
clpC1 4038932 c.1773G>C synonymous_variant 1.0
clpC1 4038941 c.1764G>C synonymous_variant 1.0
clpC1 4038953 c.1752A>G synonymous_variant 1.0
clpC1 4038956 c.1749T>C synonymous_variant 1.0
clpC1 4039724 c.981A>G synonymous_variant 1.0
clpC1 4039739 c.966C>G synonymous_variant 1.0
clpC1 4039748 c.957G>C synonymous_variant 1.0
clpC1 4039751 c.954A>G synonymous_variant 1.0
clpC1 4039757 c.948A>G synonymous_variant 1.0
clpC1 4039760 c.945T>C synonymous_variant 1.0
clpC1 4039766 c.939T>C synonymous_variant 1.0
clpC1 4039769 c.936C>G synonymous_variant 1.0
clpC1 4039778 c.927A>G synonymous_variant 1.0
clpC1 4039790 c.915C>G synonymous_variant 1.0
clpC1 4039793 c.912C>G synonymous_variant 1.0
clpC1 4039817 c.888A>C synonymous_variant 1.0
clpC1 4039820 c.885T>C synonymous_variant 1.0
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 1.0
clpC1 4039838 p.Leu289Ile missense_variant 1.0
clpC1 4039850 c.855T>C synonymous_variant 1.0