Rv0668 - c.-405T>C


Drug resistance types
39 Sensitive 2 RR-TB 53 HR-TB 21 MDR-TB 22 Pre-XDR-TB 1 XDR-TB 8 Other
lineage Counts
lineage Count
lineage2.2.2 23
lineage2.2.1 31
lineage1.1.2 4
lineage4.9 19
lineage4.5 5
lineage4.1 1
lineage2.2;lineage4.9 2
lineage2.2.1.1 4
lineage4.4.2 5
lineage2.2.1;lineage2.2.2 5
lineage4.2.1 2
lineage5.1.1 1
lineage2.2.2;lineage4.9 2
lineage2.2.1;lineage4 3
lineage4.3.3 2
lineage2.2.2;lineage4 6
lineage1.2.2.2 1
lineage4.3.2 2
lineage2;lineage4.9 1
lineage3 13
lineage2.2;lineage4 2
lineage4.6.1.1 1
lineage4.2.2.2 1
lineage4.2;lineage4.9 1
lineage4.1.2.1 2
lineage2.2.1.1;lineage4 1
lineage4.4.1.2 1
lineage4 2
lineage2 1
lineage6.1.3 1
lineage4.4.1.1 1
spoligotype Counts
spoligotype Count
None 146
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1047996 MDR-TB lineage2.2.2 None
SRR1013602 HR-TB lineage2.2.1 None
SAMN02599094 Sensitive lineage1.1.2 None
ERR4769419 Sensitive lineage4.9 None
SRR1013601 HR-TB lineage2.2.1 None
SRR1013612 Sensitive lineage4.5 None
SRR6046834 Sensitive lineage4.9 None
SRR3105762 Sensitive lineage4.1 None
SRR1047993 HR-TB lineage2.2.1 None
SRR1144809 HR-TB lineage2.2.1 None
SRR1169591 Sensitive lineage1.1.2 None
SAMN02599067 Sensitive lineage2.2.1 None
SRR1049004 HR-TB lineage2.2.2 None
SRR1048996 Sensitive lineage4.5 None
ERR1034791 MDR-TB lineage4.9 None
SRR1048995 HR-TB lineage4.5 None
SRR1013583 Sensitive lineage2.2.2 None
SRR1049026 HR-TB lineage2.2;lineage4.9 None
SRR1048983 HR-TB lineage2.2.1.1 None
SRR1048866 Pre-XDR-TB lineage4.4.2 None
ERR4872269 XDR-TB lineage2.2.1 None
SAMN02360590 MDR-TB lineage2.2.2 None
SRR1048869 HR-TB lineage2.2.1;lineage2.2.2 None
ERR9029360 MDR-TB lineage2.2.1 None
SRR7755706 MDR-TB lineage4.2.1 None
ERR751330 MDR-TB lineage5.1.1 None
SRR1180115 Other lineage4.9 None
SAMN02360591 Pre-XDR-TB lineage2.2.2 None
SRR1049022 HR-TB lineage2.2.2;lineage4.9 None
SRR1013617 Sensitive lineage2.2.1;lineage4 None
SAMN02599179 MDR-TB lineage1.1.2 None
SRR1049027 HR-TB lineage2.2.2;lineage4.9 None
SRR11342667 MDR-TB lineage4.3.3 None
SRR1013629 Pre-XDR-TB lineage2.2.2 None
SRR1013578 HR-TB lineage2.2.2;lineage4 None
SRR1048975 HR-TB lineage2.2.1 None
SRR1048886 HR-TB lineage2.2.2;lineage4 None
SRR1048997 HR-TB lineage2.2.1 None
SAMN02360563 Pre-XDR-TB lineage2.2.2 None
SRR1183339 Other lineage4.9 None
SRR1048969 HR-TB lineage2.2.1;lineage2.2.2 None
SRR1048968 HR-TB lineage2.2.1;lineage2.2.2 None
SRR1013597 Sensitive lineage2.2.2;lineage4 None
SAMN02599068 Sensitive lineage1.2.2.2 None
SRR1013568 Pre-XDR-TB lineage2.2.2 None
ERR9120012 MDR-TB lineage4.3.2 None
SRR1013630 Pre-XDR-TB lineage2.2.2;lineage4 None
SRR1013607 HR-TB lineage2.2.2 None
SRR1013604 HR-TB lineage2.2.1 None
ERR4769493 Other lineage4.9 None
SRR1048991 HR-TB lineage2;lineage4.9 None
SRR1048965 HR-TB lineage2.2.1 None
ERR2446544 Sensitive lineage3 nl
SRR1048980 HR-TB lineage3 None
SRR1013598 Sensitive lineage2.2.2;lineage4 None
SRR1013596 Sensitive lineage3 None
ERR323057 Sensitive lineage4.9 None
SRR1048994 HR-TB lineage4.9 None
SAMN02360581 HR-TB lineage2.2.1 None
SRR1013621 Pre-XDR-TB lineage2.2.2 None
SAMN02360556 Pre-XDR-TB lineage2.2.2 None
SRR1183684 Other lineage4.9 None
SRR1048852 HR-TB lineage2.2;lineage4.9 None
ERR3275548 Sensitive lineage3 nl
SRR1048985 HR-TB lineage2.2.1 None
ERR4769439 HR-TB lineage4.9 None
SRR3742667 Sensitive lineage4.9 None
SRR1013633 MDR-TB lineage2.2.2 None
SRR1048885 HR-TB lineage2.2;lineage4 None
ERR5987249 MDR-TB lineage4.3.2 None
SRR1048993 HR-TB lineage4.9 None
SAMN02360562 Pre-XDR-TB lineage4.4.2 None
SRR1048868 Pre-XDR-TB lineage2.2.2 None
SRR1013584 HR-TB lineage2.2.2 None
ERR3078008 MDR-TB lineage4.6.1.1 None
SRR5818586 RR-TB lineage4.2.2.2 None
SRR1013608 Sensitive lineage2.2.2 None
SAMN02360580 HR-TB lineage2.2.1 None
SRR1049041 HR-TB lineage2.2.1;lineage4 None
SRR1181588 Sensitive lineage4.9 None
SRR1168955 Sensitive lineage4.2;lineage4.9 None
SRR1013569 Pre-XDR-TB lineage2.2.1 None
SRR1013567 Pre-XDR-TB lineage2.2.2 None
ERR4829238 Sensitive lineage3 None
SAMN02360564 Pre-XDR-TB lineage2.2.1 None
SRR1013566 Pre-XDR-TB lineage4.4.2 None
ERR4819430 Sensitive lineage4.1.2.1 None
SRR1013565 Pre-XDR-TB lineage4.4.2 None
SRR1013599 HR-TB lineage2.2.1.1;lineage4 None
SRR1049006 HR-TB lineage2.2.2;lineage4 None
SRR1013618 RR-TB lineage2.2.1;lineage4 None
ERR2027233 Sensitive lineage4.1.2.1 None
SRR1048966 MDR-TB lineage2.2.1 None
SRR1173656 Sensitive lineage1.1.2 None
SAMN02599090 MDR-TB lineage3 None
SRR1013589 HR-TB lineage2.2.1 None
SRR1013611 Sensitive lineage4.5 None
SRR1013634 MDR-TB lineage2.2.2 None
ERR473311 Sensitive lineage4.9 None
SAMN02360583 HR-TB lineage2.2.2 None
SRR1013577 HR-TB lineage2.2.2 None
SRR1048865 Pre-XDR-TB lineage4.4.2 None
SRR17567887 Sensitive lineage4.4.1.2 None
SRR1013614 Sensitive lineage2.2.1 None
SRR7131160 Sensitive lineage3 None
SRR1013609 Sensitive lineage4 None
SRR1013603 HR-TB lineage2.2.1 None
SRR1048987 HR-TB lineage2.2.1 None
SAMN02360586 HR-TB lineage2.2.1 None
SAMN02360571 HR-TB lineage2.2.1;lineage2.2.2 None
SRR1172938 MDR-TB lineage3 None
SAMN02599089 MDR-TB lineage3 None
SRR1049040 HR-TB lineage2 None
SRR1048982 HR-TB lineage2.2.1.1 None
SAMN02360570 Pre-XDR-TB lineage2.2.1 None
SAMN02360595 Pre-XDR-TB lineage2.2.2 None
SRR1048998 HR-TB lineage2.2.1 None
SRR1048867 Pre-XDR-TB lineage2.2.2 None
SAMN02360574 HR-TB lineage2.2.1 None
SAMN02599072 Sensitive lineage2.2.1 None
SRR1166181 Sensitive lineage4.2.1 None
SRR1048870 HR-TB lineage2.2.1;lineage2.2.2 None
SRR1048986 HR-TB lineage2.2.1 None
SRR1175165 Sensitive lineage2.2.1 None
SRR1181299 Other lineage4.9 None
ERR2517457 Sensitive lineage3 None
SAMN02360577 HR-TB lineage3 None
SRR1013581 Pre-XDR-TB lineage2.2.1 None
SRR1013610 Sensitive lineage4 None
SRR1013590 HR-TB lineage2.2.1 None
SRR1173014 MDR-TB lineage3 None
SRR1013600 Sensitive lineage2.2.1.1 None
SRR1049005 MDR-TB lineage2.2.2 None
SRR1048992 HR-TB lineage2.2;lineage4 None
SRR1013570 Pre-XDR-TB lineage2.2.1 None
SRR11349133 MDR-TB lineage4.3.3 None
SAMN02599061 MDR-TB lineage3 None
ERR1023236 Other lineage6.1.3 None
SRR1183128 Other lineage4.9 None
SRR1183152 Other lineage4.9 None
SRR17567930 Sensitive lineage4.4.1.1 None
SAMN02360585 HR-TB lineage4.5 None
SRR1013622 Pre-XDR-TB lineage2.2.2 None
SRR1049023 HR-TB lineage4.9 None
ERR4769442 Sensitive lineage4.9 None
SAMN02360579 HR-TB lineage2.2.1.1 None