lineage | Count |
---|---|
lineage1.1.2 | 5 |
lineage4.4.2 | 5 |
lineage2.2.1.1 | 4 |
lineage2.2.1 | 33 |
lineage2.2.2 | 18 |
lineage2.2;lineage4 | 2 |
lineage3 | 14 |
lineage4.3.3 | 2 |
lineage4.9 | 19 |
lineage2.2;lineage4.9 | 2 |
lineage6.1.3 | 1 |
lineage2.2.2;lineage4 | 7 |
lineage2.2.1;lineage2.2.2 | 5 |
lineage5.1.1 | 1 |
lineage4.6.1.1 | 1 |
lineage4.2;lineage4.9 | 1 |
lineage2 | 1 |
lineage4.5 | 5 |
lineage2.2.1;lineage4 | 3 |
lineage4.1 | 1 |
lineage4.1.2.1 | 2 |
lineage2.2.1.1;lineage4 | 1 |
lineage4.2.1 | 2 |
lineage1.2.2.2 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.2 | 2 |
lineage4.2.2.2 | 1 |
lineage4 | 2 |
lineage2.2.2;lineage4.9 | 2 |
lineage4.4.1.2 | 1 |
lineage2;lineage4.9 | 1 |
spoligotype | Count |
---|---|
None | 146 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SAMN02599179 | MDR-TB | lineage1.1.2 | None |
SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None |
SRR1048983 | HR-TB | lineage2.2.1.1 | None |
ERR4872269 | XDR-TB | lineage2.2.1 | None |
SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1048885 | HR-TB | lineage2.2;lineage4 | None |
SRR7131160 | Sensitive | lineage3 | None |
SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None |
SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None |
SAMN02360574 | HR-TB | lineage2.2.1 | None |
SRR1013584 | HR-TB | lineage2.2.2 | None |
SRR1013614 | Sensitive | lineage2.2.1 | None |
SAMN02598990 | Sensitive | lineage1.1.2 | None |
SAMN02599072 | Sensitive | lineage2.2.1 | None |
SRR11342667 | MDR-TB | lineage4.3.3 | None |
SRR1181299 | Other | lineage4.9 | None |
ERR4769493 | Other | lineage4.9 | None |
SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None |
ERR1023236 | Other | lineage6.1.3 | None |
SRR1144759 | HR-TB | lineage2.2.2;lineage4 | None |
SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None |
SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None |
SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None |
SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1183128 | Other | lineage4.9 | None |
SRR1048966 | MDR-TB | lineage2.2.1 | None |
ERR751330 | MDR-TB | lineage5.1.1 | None |
SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None |
ERR4769442 | Sensitive | lineage4.9 | None |
ERR3078008 | MDR-TB | lineage4.6.1.1 | None |
SRR1048965 | HR-TB | lineage2.2.1 | None |
SRR1013604 | HR-TB | lineage2.2.1 | None |
SRR1048980 | HR-TB | lineage3 | None |
ERR1034791 | RR-TB | lineage4.9 | None |
SAMN02360577 | HR-TB | lineage3 | None |
SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1168955 | Sensitive | lineage4.2;lineage4.9 | None |
SRR1173014 | MDR-TB | lineage3 | None |
ERR323057 | Sensitive | lineage4.9 | None |
SRR1013602 | HR-TB | lineage2.2.1 | None |
ERR473311 | Sensitive | lineage4.9 | None |
SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1048993 | HR-TB | lineage4.9 | None |
SRR1048994 | HR-TB | lineage4.9 | None |
SRR1013596 | Sensitive | lineage3 | None |
SAMN02360580 | HR-TB | lineage2.2.1 | None |
SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None |
ERR3275548 | Sensitive | lineage3 | nl |
SRR1047996 | MDR-TB | lineage2.2.2 | None |
SRR1180115 | Other | lineage4.9 | None |
SRR1013607 | HR-TB | lineage2.2.2 | None |
SAMN02599089 | MDR-TB | lineage3 | None |
SRR1049040 | HR-TB | lineage2 | None |
SAMN02360585 | HR-TB | lineage4.5 | None |
SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None |
SRR1048986 | HR-TB | lineage2.2.1 | None |
SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1013603 | HR-TB | lineage2.2.1 | None |
SRR1175165 | Sensitive | lineage2.2.1 | None |
SRR1048852 | HR-TB | lineage2.2;lineage4.9 | None |
SRR1013595 | Sensitive | lineage3 | None |
SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None |
SRR3105762 | Sensitive | lineage4.1 | None |
SRR1048974 | HR-TB | lineage2.2.1 | None |
SAMN02599094 | Sensitive | lineage1.1.2 | None |
SRR1013600 | Sensitive | lineage2.2.1.1 | None |
SRR1183339 | Other | lineage4.9 | None |
SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4769419 | Sensitive | lineage4.9 | None |
ERR4819430 | Sensitive | lineage4.1.2.1 | None |
SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None |
SRR1183152 | Other | lineage4.9 | None |
SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None |
SAMN02360583 | HR-TB | lineage2.2.2 | None |
SRR1049023 | HR-TB | lineage4.9 | None |
SAMN02360579 | HR-TB | lineage2.2.1.1 | None |
SAMN02599067 | Sensitive | lineage2.2.1 | None |
SRR1048985 | HR-TB | lineage2.2.1 | None |
SRR1048992 | HR-TB | lineage2.2;lineage4 | None |
SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None |
SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1048996 | Sensitive | lineage4.5 | None |
SRR11349133 | MDR-TB | lineage4.3.3 | None |
SRR1181588 | Sensitive | lineage4.9 | None |
ERR4769439 | HR-TB | lineage4.9 | None |
SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None |
SRR7755706 | MDR-TB | lineage4.2.1 | None |
SRR1013590 | HR-TB | lineage2.2.1 | None |
SRR1183684 | Other | lineage4.9 | None |
SAMN02599068 | Sensitive | lineage1.2.2.2 | None |
SRR17567930 | Sensitive | lineage4.4.1.1 | None |
SAMN02360581 | HR-TB | lineage2.2.1 | None |
SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None |
SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1048995 | HR-TB | lineage4.5 | None |
SRR1013583 | Sensitive | lineage2.2.2 | None |
SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None |
SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None |
ERR5987249 | MDR-TB | lineage4.3.2 | None |
SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None |
SRR1048982 | HR-TB | lineage2.2.1.1 | None |
SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1048998 | HR-TB | lineage2.2.1 | None |
SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None |
SRR5818586 | RR-TB | lineage4.2.2.2 | None |
SRR1013608 | Sensitive | lineage2.2.2 | None |
SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None |
SAMN02599090 | MDR-TB | lineage3 | None |
SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None |
SRR1048975 | HR-TB | lineage2.2.1 | None |
SRR1013610 | Sensitive | lineage4 | None |
SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None |
SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None |
SRR1047993 | HR-TB | lineage2.2.1 | None |
ERR2027233 | Sensitive | lineage4.1.2.1 | None |
ERR4829238 | Sensitive | lineage3 | None |
SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None |
SRR1048987 | HR-TB | lineage2.2.1 | None |
SRR1049022 | HR-TB | lineage2.2.2;lineage4.9 | None |
SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None |
SRR1166181 | Sensitive | lineage4.2.1 | None |
SRR1144809 | HR-TB | lineage2.2.1 | None |
SRR17567887 | Sensitive | lineage4.4.1.2 | None |
SAMN02599061 | MDR-TB | lineage3 | None |
SRR1013609 | Sensitive | lineage4 | None |
SRR1013611 | Sensitive | lineage4.5 | None |
SRR1048997 | HR-TB | lineage2.2.1 | None |
SRR1173656 | Sensitive | lineage1.1.2 | None |
SRR3742667 | Sensitive | lineage4.9 | None |
SRR1013589 | HR-TB | lineage2.2.1 | None |
ERR2446544 | Sensitive | lineage3 | nl |
SRR1048991 | HR-TB | lineage2;lineage4.9 | None |
SRR1013577 | HR-TB | lineage2.2.2 | None |
SRR1013601 | HR-TB | lineage2.2.1 | None |
SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None |
SRR1013612 | Sensitive | lineage4.5 | None |
SRR1172938 | MDR-TB | lineage3 | None |
SRR6046834 | Sensitive | lineage4.9 | None |
SRR1169591 | Sensitive | lineage1.1.2 | None |
ERR9029360 | MDR-TB | lineage2.2.1 | None |
ERR9120012 | MDR-TB | lineage4.3.2 | None |
SAMN02360586 | HR-TB | lineage2.2.1 | None |
ERR2517457 | Sensitive | lineage3 | None |