Rv0668 - c.-405T>C
Drug resistance types
41 Sensitive
3 RR-TB
54 HR-TB
16 MDR-TB
23 Pre-XDR-TB
1 XDR-TB
8 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 19 |
| lineage4.4.2 | 5 |
| lineage4.1.2.1 | 2 |
| lineage2.2.2 | 18 |
| lineage2.2.1 | 33 |
| lineage4.5 | 5 |
| lineage4.4.1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3 | 14 |
| lineage2.2.1.1 | 4 |
| lineage4.3.2 | 2 |
| lineage2 | 1 |
| lineage2.2.2;lineage4 | 7 |
| lineage4.1 | 1 |
| lineage1.1.2 | 5 |
| lineage2.2.1;lineage2.2.2 | 5 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage5.1.1 | 1 |
| lineage2.2.2;lineage4.9 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4 | 2 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.2.1 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2;lineage4 | 2 |
| lineage4.3.3 | 2 |
| lineage2.2.1;lineage4 | 3 |
| lineage4.2.2.2 | 1 |
| lineage2.2;lineage4.9 | 2 |
| lineage6.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 146 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4769419 | Sensitive | lineage4.9 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | ERR2027233 | Sensitive | lineage4.1.2.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1049023 | HR-TB | lineage4.9 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048996 | Sensitive | lineage4.5 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR1181588 | Sensitive | lineage4.9 | None | ERR1034791 | RR-TB | lineage4.9 | None | SRR3742667 | Sensitive | lineage4.9 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SAMN02599068 | Sensitive | lineage1.2.2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013612 | Sensitive | lineage4.5 | None | SRR1172938 | MDR-TB | lineage3 | None | SRR6046834 | Sensitive | lineage4.9 | None | SRR1013596 | Sensitive | lineage3 | None | SRR1048983 | HR-TB | lineage2.2.1.1 | None | SRR1180115 | Other | lineage4.9 | None | ERR5987249 | MDR-TB | lineage4.3.2 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SRR1049040 | HR-TB | lineage2 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013595 | Sensitive | lineage3 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR3105762 | Sensitive | lineage4.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SAMN02599094 | Sensitive | lineage1.1.2 | None | SRR1013600 | Sensitive | lineage2.2.1.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SRR1183152 | Other | lineage4.9 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | SAMN02599067 | Sensitive | lineage2.2.1 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1049022 | HR-TB | lineage2.2.2;lineage4.9 | None | ERR3078008 | MDR-TB | lineage4.6.1.1 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1048980 | HR-TB | lineage3 | None | SAMN02599061 | MDR-TB | lineage3 | None | SRR1013609 | Sensitive | lineage4 | None | SRR1013611 | Sensitive | lineage4.5 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1168955 | Sensitive | lineage4.2;lineage4.9 | None | SRR1173014 | MDR-TB | lineage3 | None | ERR323057 | Sensitive | lineage4.9 | None | SRR1173656 | Sensitive | lineage1.1.2 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | ERR2446544 | Sensitive | lineage3 | nl | ERR473311 | Sensitive | lineage4.9 | None | SRR7755706 | MDR-TB | lineage4.2.1 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | SRR1183684 | Other | lineage4.9 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | SRR17567930 | Sensitive | lineage4.4.1.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR2517457 | Sensitive | lineage3 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275548 | Sensitive | lineage3 | nl | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR7131160 | Sensitive | lineage3 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02599089 | MDR-TB | lineage3 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | SAMN02598990 | Sensitive | lineage1.1.2 | None | SAMN02599072 | Sensitive | lineage2.2.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SAMN02599090 | MDR-TB | lineage3 | None | SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | SRR1183339 | Other | lineage4.9 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SRR1183128 | Other | lineage4.9 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | ERR4829238 | Sensitive | lineage3 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | ERR4769442 | Sensitive | lineage4.9 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | SRR1166181 | Sensitive | lineage4.2.1 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1169591 | Sensitive | lineage1.1.2 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR9120012 | MDR-TB | lineage4.3.2 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02599179 | MDR-TB | lineage1.1.2 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013583 | Sensitive | lineage2.2.2 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1013614 | Sensitive | lineage2.2.1 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SRR1175165 | Sensitive | lineage2.2.1 | None | SRR1048852 | HR-TB | lineage2.2;lineage4.9 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | SRR1181299 | Other | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | SRR1013610 | Sensitive | lineage4 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR1144759 | HR-TB | lineage2.2.2;lineage4 | None |
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