Run ID: SRR3742667
Sample name:
Date: 04-04-2023 05:39:55
Number of reads: 24260
Percentage reads mapped: 0.27
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 762878 | p.Ile1024Met | missense_variant | 1.0 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 1.0 |
rpoB | 762909 | p.Ile1035Leu | missense_variant | 1.0 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 1.0 |
rpoC | 762920 | c.-450C>G | upstream_gene_variant | 1.0 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 1.0 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 1.0 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 1.0 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 1.0 |
rpoC | 762953 | c.-417G>A | upstream_gene_variant | 1.0 |
rpoC | 762965 | c.-405T>C | upstream_gene_variant | 1.0 |
rpoC | 762989 | c.-381G>T | upstream_gene_variant | 1.0 |
rpoB | 762990 | p.Phe1062Leu | missense_variant | 1.0 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 1.0 |
rpoB | 763005 | p.Cys1067Val | missense_variant | 1.0 |
rpoC | 763013 | c.-357C>T | upstream_gene_variant | 1.0 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 1.0 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 1.0 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoB | 763050 | p.Leu1082Met | missense_variant | 1.0 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 1.0 |
rpoC | 764377 | c.1008C>G | synonymous_variant | 1.0 |
rpoC | 764383 | c.1014C>G | synonymous_variant | 1.0 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 1.0 |
rpoC | 764398 | c.1029G>C | synonymous_variant | 1.0 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 1.0 |
rpoC | 764419 | c.1050C>G | synonymous_variant | 1.0 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 1.0 |
rpoC | 764450 | p.Gly361Arg | missense_variant | 1.0 |
rpoC | 764461 | p.Glu364Asp | missense_variant | 1.0 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 1.0 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 1.0 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 1.0 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 1.0 |
rpoC | 764582 | p.Leu405Met | missense_variant | 1.0 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 1.0 |
rpoC | 764640 | p.Tyr424Phe | missense_variant | 1.0 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 1.0 |
rpoC | 764663 | p.Val432Thr | missense_variant | 1.0 |
rpoC | 764668 | c.1299C>G | synonymous_variant | 1.0 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 1.0 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 1.0 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 1.0 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 1.0 |
rpoC | 764705 | p.Leu446Lys | missense_variant | 1.0 |
rrs | 1471876 | n.31G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1471878 | n.33C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1471892 | n.47G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472101 | n.256G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472108 | n.263C>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472129 | n.284G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472135 | n.290C>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472153 | n.308G>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472213 | n.368G>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472236 | n.391C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472252 | n.407G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472253 | n.408G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472266 | n.421C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472278 | n.433C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472338 | n.493A>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472349 | n.504A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472374 | n.529T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472382 | n.537G>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472391 | n.546C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472412 | n.567A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472415 | n.570T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472544 | n.699C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472545 | n.700A>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472574 | n.729T>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472583 | n.738T>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472706 | n.861C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472707 | n.862A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472708 | n.863T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472715 | n.870C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472716 | n.871C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472827 | n.982G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472836 | n.991G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472923 | n.1078G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472934 | n.1089C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473130 | n.1285G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473193 | n.1348G>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473195 | n.1350T>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474584 | n.927C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475499 | n.1842C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475522 | n.1865A>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1475526 | n.1869C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475528 | n.1871T>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1475538 | n.1881T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475539 | n.1882A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475540 | n.1883C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475550 | n.1893A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475553 | n.1896G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475555 | n.1898T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475564 | n.1907C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475574 | n.1917C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475575 | n.1918C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475576 | n.1919C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475777 | n.2120A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475876 | n.2220_2221delCT | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476164 | n.2507A>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476238 | n.2581T>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476246 | n.2589G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476266 | n.2609G>A | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476279 | n.2622G>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476281 | n.2624T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 1.0 |