lineage | Count |
---|---|
lineage3 | 13 |
lineage5.1.1 | 3 |
lineage4.4.2 | 2 |
lineage4.6.1.1 | 5 |
lineage4.3.2 | 2 |
lineage2.2.2 | 15 |
lineage4.5 | 3 |
lineage2.2.1 | 20 |
lineage4.9 | 17 |
lineage2.2;lineage4.9 | 2 |
lineage2.2.2;lineage4.9 | 2 |
lineage3.1.1 | 1 |
lineage2.2;lineage4 | 2 |
lineage4.3.3 | 2 |
lineage2.2.2;lineage4 | 2 |
lineage1.1.2 | 3 |
La1.7;lineage4.9 | 1 |
lineage4.2.1 | 1 |
lineage2.2.1;lineage4 | 1 |
lineage4.1 | 1 |
lineage2.2.1;lineage2.2.2 | 1 |
lineage4.1.2.1 | 1 |
lineage4.4.1.2 | 1 |
lineage4 | 1 |
lineage4.2;lineage4.9 | 1 |
lineage4.1.1.3 | 1 |
lineage4.4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 105 |
ID | Drug resistance | Lineage | Country iso2 | ERR2517457 | Sensitive | lineage3 | None | ERR751338 | Other | lineage5.1.1 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR7535081 | Sensitive | lineage4.6.1.1 | None | ERR5987249 | MDR-TB | lineage4.3.2 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013614 | Sensitive | lineage2.2.1 | None | SRR1141261 | Sensitive | lineage4.9 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1048852 | HR-TB | lineage2.2;lineage4.9 | None | ERR751336 | Sensitive | lineage5.1.1 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1062864 | Sensitive | lineage4.9 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR1062865 | Sensitive | lineage2.2.2 | None | SRR1106670 | Sensitive | lineage4.9 | None | ERR405216 | Sensitive | lineage3.1.1 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | ERR9119101 | Sensitive | lineage4.3.3 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1140586 | Sensitive | lineage4.9 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1181588 | Sensitive | lineage4.9 | None | ERR1034791 | RR-TB | lineage4.9 | None | SRR7535053 | Sensitive | lineage3 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173014 | MDR-TB | lineage3 | None | ERR1023494 | Sensitive | lineage3 | None | SRR3742667 | Sensitive | lineage4.9 | None | ERR2446544 | Sensitive | lineage3 | nl | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1049736 | Sensitive | lineage4.9 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR7535074 | Sensitive | lineage3 | None | SRR1013596 | Sensitive | lineage3 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR9120012 | MDR-TB | lineage4.3.2 | None | SAMN02599179 | MDR-TB | lineage1.1.2 | None | SRR1013583 | Sensitive | lineage2.2.2 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | SRR1180115 | Other | lineage4.9 | None | SRR7131160 | Sensitive | lineage3 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062937 | Sensitive | lineage4.6.1.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02599090 | MDR-TB | lineage3 | None | ERR5908229 | Sensitive | lineage4.3.3 | None | SRR1013531 | Sensitive | lineage4.9 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013633 | MDR-TB | lineage2.2.2 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR3078008 | MDR-TB | lineage4.6.1.1 | None | SRR1166181 | Sensitive | lineage4.2.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1049744 | Sensitive | lineage4.6.1.1 | None | ERR405190 | Sensitive | lineage4.9 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | ERR405191 | Sensitive | lineage4.9 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR6046834 | Sensitive | lineage4.9 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | ERR405215 | Sensitive | lineage2.2.1 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | SRR3105762 | Sensitive | lineage4.1 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | ERR4829238 | Sensitive | lineage3 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1049022 | HR-TB | lineage2.2.2;lineage4.9 | None | SAMN02598978 | Other | lineage1.1.2 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | SRR1049735 | Sensitive | lineage4.9 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048996 | Sensitive | lineage4.5 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1049004 | HR-TB | lineage2.2.2 | None | SAMN02599061 | MDR-TB | lineage3 | None | SRR1013609 | Sensitive | lineage4 | None | SRR1013611 | Sensitive | lineage4.5 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR1168955 | Sensitive | lineage4.2;lineage4.9 | None | ERR323057 | Sensitive | lineage4.9 | None | SRR6131528 | Sensitive | lineage4.1.1.3 | None | SRR1013527 | Other | lineage2.2.1 | None | SRR17567930 | Sensitive | lineage4.4.1.1 | None | SRR1173566 | Other | lineage1.1.2 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None |
---|